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  1. Article ; Online: Cryptic transmission of SARS-CoV-2 in Washington state.

    Bedford, Trevor / Greninger, Alexander L / Roychoudhury, Pavitra / Starita, Lea M / Famulare, Michael / Huang, Meei-Li / Nalla, Arun / Pepper, Gregory / Reinhardt, Adam / Xie, Hong / Shrestha, Lasata / Nguyen, Truong N / Adler, Amanda / Brandstetter, Elisabeth / Cho, Shari / Giroux, Danielle / Han, Peter D / Fay, Kairsten / Frazar, Chris D /
    Ilcisin, Misja / Lacombe, Kirsten / Lee, Jover / Kiavand, Anahita / Richardson, Matthew / Sibley, Thomas R / Truong, Melissa / Wolf, Caitlin R / Nickerson, Deborah A / Rieder, Mark J / Englund, Janet A / Hadfield, James / Hodcroft, Emma B / Huddleston, John / Moncla, Louise H / Müller, Nicola F / Neher, Richard A / Deng, Xianding / Gu, Wei / Federman, Scot / Chiu, Charles / Duchin, Jeffrey S / Gautom, Romesh / Melly, Geoff / Hiatt, Brian / Dykema, Philip / Lindquist, Scott / Queen, Krista / Tao, Ying / Uehara, Anna / Tong, Suxiang / MacCannell, Duncan / Armstrong, Gregory L / Baird, Geoffrey S / Chu, Helen Y / Shendure, Jay / Jerome, Keith R

    Science (New York, N.Y.)

    2020  Volume 370, Issue 6516, Page(s) 571–575

    Abstract: ... the reconstruction of its transmission history, although this is contingent on sampling. We analyzed 453 SARS-CoV-2 ... in the United States. We find that most SARS-CoV-2 infections sampled during this time derive from a single ... genomes collected between 20 February and 15 March 2020 from infected patients in Washington state ...

    Abstract After its emergence in Wuhan, China, in late November or early December 2019, the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus rapidly spread globally. Genome sequencing of SARS-CoV-2 allows the reconstruction of its transmission history, although this is contingent on sampling. We analyzed 453 SARS-CoV-2 genomes collected between 20 February and 15 March 2020 from infected patients in Washington state in the United States. We find that most SARS-CoV-2 infections sampled during this time derive from a single introduction in late January or early February 2020, which subsequently spread locally before active community surveillance was implemented.
    MeSH term(s) Bayes Theorem ; Betacoronavirus/genetics ; COVID-19 ; Coronavirus Infections/epidemiology ; Coronavirus Infections/transmission ; Genome, Viral ; Humans ; Likelihood Functions ; Pandemics ; Phylogeny ; Pneumonia, Viral/epidemiology ; Pneumonia, Viral/transmission ; SARS-CoV-2 ; Washington/epidemiology
    Keywords covid19
    Language English
    Publishing date 2020-09-10
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 128410-1
    ISSN 1095-9203 ; 0036-8075
    ISSN (online) 1095-9203
    ISSN 0036-8075
    DOI 10.1126/science.abc0523
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Cryptic transmission of SARS-CoV-2 in Washington State.

    Bedford, Trevor / Greninger, Alexander L / Roychoudhury, Pavitra / Starita, Lea M / Famulare, Michael / Huang, Meei-Li / Nalla, Arun / Pepper, Gregory / Reinhardt, Adam / Xie, Hong / Shrestha, Lasata / Nguyen, Truong N / Adler, Amanda / Brandstetter, Elisabeth / Cho, Shari / Giroux, Danielle / Han, Peter D / Fay, Kairsten / Frazar, Chris D /
    Ilcisin, Misja / Lacombe, Kirsten / Lee, Jover / Kiavand, Anahita / Richardson, Matthew / Sibley, Thomas R / Truong, Melissa / Wolf, Caitlin R / Nickerson, Deborah A / Rieder, Mark J / Englund, Janet A / Hadfield, James / Hodcroft, Emma B / Huddleston, John / Moncla, Louise H / Müller, Nicola F / Neher, Richard A / Deng, Xianding / Gu, Wei / Federman, Scot / Chiu, Charles / Duchin, Jeff / Gautom, Romesh / Melly, Geoff / Hiatt, Brian / Dykema, Philip / Lindquist, Scott / Queen, Krista / Tao, Ying / Uehara, Anna / Tong, Suxiang / MacCannell, Duncan / Armstrong, Gregory L / Baird, Geoffrey S / Chu, Helen Y / Shendure, Jay / Jerome, Keith R

    medRxiv : the preprint server for health sciences

    2020  

    Abstract: ... for the reconstruction of transmission history connecting these infections. Here, we analyze 346 SARS-CoV-2 genomes ... from samples collected between 20 February and 15 March 2020 from infected patients in Washington State, USA ... Following its emergence in Wuhan, China, in late November or early December 2019, the SARS-CoV-2 ...

    Abstract Following its emergence in Wuhan, China, in late November or early December 2019, the SARS-CoV-2 virus has rapidly spread throughout the world. On March 11, 2020, the World Health Organization declared Coronavirus Disease 2019 (COVID-19) a pandemic. Genome sequencing of SARS-CoV-2 strains allows for the reconstruction of transmission history connecting these infections. Here, we analyze 346 SARS-CoV-2 genomes from samples collected between 20 February and 15 March 2020 from infected patients in Washington State, USA. We found that the large majority of SARS-CoV-2 infections sampled during this time frame appeared to have derived from a single introduction event into the state in late January or early February 2020 and subsequent local spread, strongly suggesting cryptic spread of COVID-19 during the months of January and February 2020, before active community surveillance was implemented. We estimate a common ancestor of this outbreak clade as occurring between 18 January and 9 February 2020. From genomic data, we estimate an exponential doubling between 2.4 and 5.1 days. These results highlight the need for large-scale community surveillance for SARS-CoV-2 introductions and spread and the power of pathogen genomics to inform epidemiological understanding.
    Keywords covid19
    Language English
    Publishing date 2020-04-06
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2020.04.02.20051417
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Cryptic transmission of SARS-CoV-2 in Washington state

    Bedford, Trevor / Greninger, Alexander L / Roychoudhury, Pavitra / Starita, Lea M / Famulare, Michael / Huang, Meei-Li / Nalla, Arun / Pepper, Gregory / Reinhardt, Adam / Xie, Hong / Shrestha, Lasata / Nguyen, Truong N / Adler, Amanda / Brandstetter, Elisabeth / Cho, Shari / Giroux, Danielle / Han, Peter D / Fay, Kairsten / Frazar, Chris D /
    Ilcisin, Misja / Lacombe, Kirsten / Lee, Jover / Kiavand, Anahita / Richardson, Matthew / Sibley, Thomas R / Truong, Melissa / Wolf, Caitlin R / Nickerson, Deborah A / Rieder, Mark J / Englund, Janet A / Hadfield, James / Hodcroft, Emma B / Huddleston, John / Moncla, Louise H / Müller, Nicola F / Neher, Richard A / Deng, Xianding / Gu, Wei / Federman, Scot / Chiu, Charles / Duchin, Jeffrey S / Gautom, Romesh / Melly, Geoff / Hiatt, Brian / Dykema, Philip / Lindquist, Scott / Queen, Krista / Tao, Ying / Uehara, Anna / Tong, Suxiang

    Science

    Abstract: ... the reconstruction of its transmission history, although this is contingent on sampling. We analyzed 453 SARS-CoV-2 ... in the United States. We find that most SARS-CoV-2 infections sampled during this time derive from a single ... genomes collected between 20 February and 15 March 2020 from infected patients in Washington state ...

    Abstract After its emergence in Wuhan, China, in late November or early December 2019, the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus rapidly spread globally. Genome sequencing of SARS-CoV-2 allows the reconstruction of its transmission history, although this is contingent on sampling. We analyzed 453 SARS-CoV-2 genomes collected between 20 February and 15 March 2020 from infected patients in Washington state in the United States. We find that most SARS-CoV-2 infections sampled during this time derive from a single introduction in late January or early February 2020, which subsequently spread locally before active community surveillance was implemented.
    Keywords covid19
    Publisher WHO
    Document type Article
    Note WHO #Covidence: #760213
    Database COVID19

    Kategorien

  4. Article ; Online: Cryptic transmission of SARS-CoV-2 in Washington state

    Bedford, Trevor / Greninger, Alexander L. / Roychoudhury, Pavitra / Starita, Lea M. / Famulare, Michael / Huang, Meei-Li / Nalla, Arun / Pepper, Gregory / Reinhardt, Adam / Xie, Hong / Shrestha, Lasata / Nguyen, Truong N. / Adler, Amanda / Brandstetter, Elisabeth / Cho, Shari / Giroux, Danielle / Han, Peter D. / Fay, Kairsten / Frazar, Chris D. /
    Ilcisin, Misja / Lacombe, Kirsten / Lee, Jover / Kiavand, Anahita / Richardson, Matthew / Sibley, Thomas R. / Truong, Melissa / Wolf, Caitlin R. / Nickerson, Deborah A. / Rieder, Mark J. / Englund, Janet A. / Hadfield, James / Hodcroft, Emma B. / Huddleston, John / Moncla, Louise H. / Müller, Nicola F. / Neher, Richard A. / Deng, Xianding / Gu, Wei / Federman, Scot / Chiu, Charles / Duchin, Jeffrey S. / Gautom, Romesh / Melly, Geoff / Hiatt, Brian / Dykema, Philip / Lindquist, Scott / Queen, Krista / Tao, Ying / Uehara, Anna / Tong, Suxiang / MacCannell, Duncan / Armstrong, Gregory L. / Baird, Geoffrey S. / Chu, Helen Y. / Shendure, Jay / Jerome, Keith R.

    Science

    2020  Volume 370, Issue 6516, Page(s) 571–575

    Abstract: ... the reconstruction of its transmission history, although this is contingent on sampling. We analyzed 453 SARS-CoV-2 ... in the United States. We find that most SARS-CoV-2 infections sampled during this time derive from a single ... genomes collected between 20 February and 15 March 2020 from infected patients in Washington state ...

    Abstract After its emergence in Wuhan, China, in late November or early December 2019, the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) virus rapidly spread globally. Genome sequencing of SARS-CoV-2 allows the reconstruction of its transmission history, although this is contingent on sampling. We analyzed 453 SARS-CoV-2 genomes collected between 20 February and 15 March 2020 from infected patients in Washington state in the United States. We find that most SARS-CoV-2 infections sampled during this time derive from a single introduction in late January or early February 2020, which subsequently spread locally before active community surveillance was implemented.
    Keywords Multidisciplinary ; covid19
    Language English
    Publisher American Association for the Advancement of Science (AAAS)
    Publishing country us
    Document type Article ; Online
    ZDB-ID 128410-1
    ISSN 1095-9203 ; 0036-8075
    ISSN (online) 1095-9203
    ISSN 0036-8075
    DOI 10.1126/science.abc0523
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

    More links

    Kategorien

  5. Article ; Online: Cryptic transmission of SARS-CoV-2 in Washington State

    Bedford, Trevor / Greninger, Alexander L. / Roychoudhury, Pavitra / Starita, Lea M / Famulare, Michael / Huang, Meei-Li / Nalla, Arun / Pepper, Gregory / Reinhardt, Adam / Xie, Hong / Shrestha, Lasata / Nguyen, Truong N / Adler, Amanda / Brandstetter, Elisabeth / Cho, Shari / Giroux, Danielle / Han, Peter D / Fay, Kairsten / Frazar, Chris D /
    Ilcisin, Misja / Lacombe, Kirsten / Lee, Jover / Kiavand, Anahita / Richardson, Matthew / Sibley, Thomas R / Truong, Melissa / Wolf, Caitlin R / Nickerson, Deborah A / Rieder, Mark J / Englund, Janet A / the Seattle Flu Study Investigators / Hadfield, James / Hodcroft, Emma B / Huddleston, John / Moncla, Louise H / Müller, Nicola F / Neher, Richard A / Deng, Xianding / Gu, Wei / Federman, Scot / Chiu, Charles / Duchin, Jeff / Gautom, Romesh / Melly, Geoff / Hiatt, Brian / Dykema, Philip / Lindquist, Scott / Queen, Krista / Tao, Ying / Uehara, Anna / Tong, Suxiang / MacCannell, Duncan / Armstrong, Gregory L / Baird, Geoffrey S / Chu, Helen Y / Jerome, Keith R

    medRxiv

    Abstract: ... for the reconstruction of transmission history connecting these infections. Here, we analyze 346 SARS-CoV-2 genomes ... from samples collected between 20 February and 15 March 2020 from infected patients in Washington State, USA ... Following its emergence in Wuhan, China, in late November or early December 2019, the SARS-CoV-2 ...

    Abstract Following its emergence in Wuhan, China, in late November or early December 2019, the SARS-CoV-2 virus has rapidly spread throughout the world. On March 11, 2020, the World Health Organization declared Coronavirus Disease 2019 (COVID-19) a pandemic. Genome sequencing of SARS-CoV-2 strains allows for the reconstruction of transmission history connecting these infections. Here, we analyze 346 SARS-CoV-2 genomes from samples collected between 20 February and 15 March 2020 from infected patients in Washington State, USA. We found that the large majority of SARS-CoV-2 infections sampled during this time frame appeared to have derived from a single introduction event into the state in late January or early February 2020 and subsequent local spread, strongly suggesting cryptic spread of COVID-19 during the months of January and February 2020, before active community surveillance was implemented. We estimate a common ancestor of this outbreak clade as occurring between 18 January and 9 February 2020. From genomic data, we estimate an exponential doubling between 2.4 and 5.1 days. These results highlight the need for large-scale community surveillance for SARS-CoV-2 introductions and spread and the power of pathogen genomics to inform epidemiological understanding.
    Keywords covid19
    Language English
    Publishing date 2020-04-06
    Publisher Cold Spring Harbor Laboratory Press
    Document type Article ; Online
    DOI 10.1101/2020.04.02.20051417
    Database COVID19

    Kategorien

  6. Article ; Online: Cryptic transmission of SARS-CoV-2 in Washington State

    Bedford, Trevor / Greninger, Alexander L. / Roychoudhury, Pavitra / Starita, Lea M / Famulare, Michael / Huang, Meei-Li / Nalla, Arun / Pepper, Gregory / Reinhardt, Adam / Xie, Hong / Shrestha, Lasata / Nguyen, Truong N / Adler, Amanda / Brandstetter, Elisabeth / Cho, Shari / Giroux, Danielle / Han, Peter D / Fay, Kairsten / Frazar, Chris D /
    Ilcisin, Misja / Lacombe, Kirsten / Lee, Jover / Kiavand, Anahita / Richardson, Matthew / Sibley, Thomas R / Truong, Melissa / Wolf, Caitlin R / Nickerson, Deborah A / Rieder, Mark J / Englund, Janet A / the Seattle Flu Study Investigators / Hadfield, James / Hodcroft, Emma B / Huddleston, John / Moncla, Louise H / Müller, Nicola F / Neher, Richard A / Deng, Xianding / Gu, Wei / Federman, Scot / Chiu, Charles / Duchin, Jeff / Gautom, Romesh / Melly, Geoff / Hiatt, Brian / Dykema, Philip / Lindquist, Scott / Queen, Krista / Tao, Ying / Uehara, Anna / Tong, Suxiang / MacCannell, Duncan / Armstrong, Gregory L / Baird, Geoffrey S / Chu, Helen Y / Shendure, Jay / Jerome, Keith R

    medRxiv

    Abstract: ... for the reconstruction of transmission history connecting these infections. Here, we analyze 346 SARS-CoV-2 genomes ... from samples collected between 20 February and 15 March 2020 from infected patients in Washington State, USA ... Following its emergence in Wuhan, China, in late November or early December 2019, the SARS-CoV-2 ...

    Abstract Following its emergence in Wuhan, China, in late November or early December 2019, the SARS-CoV-2 virus has rapidly spread throughout the world. On March 11, 2020, the World Health Organization declared Coronavirus Disease 2019 (COVID-19) a pandemic. Genome sequencing of SARS-CoV-2 strains allows for the reconstruction of transmission history connecting these infections. Here, we analyze 346 SARS-CoV-2 genomes from samples collected between 20 February and 15 March 2020 from infected patients in Washington State, USA. We found that the large majority of SARS-CoV-2 infections sampled during this time frame appeared to have derived from a single introduction event into the state in late January or early February 2020 and subsequent local spread, strongly suggesting cryptic spread of COVID-19 during the months of January and February 2020, before active community surveillance was implemented. We estimate a common ancestor of this outbreak clade as occurring between 18 January and 9 February 2020. From genomic data, we estimate an exponential doubling between 2.4 and 5.1 days. These results highlight the need for large-scale community surveillance for SARS-CoV-2 introductions and spread and the power of pathogen genomics to inform epidemiological understanding.
    Keywords covid19
    Language English
    Publishing date 2020-04-16
    Publisher Cold Spring Harbor Laboratory Press
    Document type Article ; Online
    DOI 10.1101/2020.04.02.20051417
    Database COVID19

    Kategorien

  7. Article ; Online: Cryptic transmission of SARS-CoV-2 in Washington State

    Trevor Bedford / Alexander L. Greninger / Pavitra Roychoudhury / Lea M Starita / Michael Famulare / Meei-Li Huang / Arun Nalla / Gregory Pepper / Adam Reinhardt / Hong Xie / Lasata Shrestha / Truong N Nguyen / Amanda Adler / Elisabeth Brandstetter / Shari Cho / Danielle Giroux / Peter D Han / Kairsten Fay / Chris D Frazar /
    Misja Ilcisin / Kirsten Lacombe / Jover Lee / Anahita Kiavand / Matthew Richardson / Thomas R Sibley / Melissa Truong / Caitlin R Wolf / Deborah A Nickerson / Mark J Rieder / Janet A Englund / James Hadfield / Emma B Hodcroft / John Huddleston / Louise H Moncla / Nicola F Müller / Richard A Neher / Xianding Deng / Wei Gu / Scot Federman / Charles Chiu / Jeff Duchin / Romesh Gautom / Geoff Melly / Brian Hiatt / Philip Dykema / Scott Lindquist / Krista Queen / Ying Tao / Anna Uehara / Suxiang Tong / Duncan MacCannell / Gregory L Armstrong / Geoffrey S Baird / Helen Y Chu / Keith R Jerome

    Abstract: ... for the reconstruction of transmission history connecting these infections. Here, we analyze 346 SARS-CoV-2 genomes ... from samples collected between 20 February and 15 March 2020 from infected patients in Washington State, USA ... Following its emergence in Wuhan, China, in late November or early December 2019, the SARS-CoV-2 ...

    Abstract Following its emergence in Wuhan, China, in late November or early December 2019, the SARS-CoV-2 virus has rapidly spread throughout the world. On March 11, 2020, the World Health Organization declared Coronavirus Disease 2019 (COVID-19) a pandemic. Genome sequencing of SARS-CoV-2 strains allows for the reconstruction of transmission history connecting these infections. Here, we analyze 346 SARS-CoV-2 genomes from samples collected between 20 February and 15 March 2020 from infected patients in Washington State, USA. We found that the large majority of SARS-CoV-2 infections sampled during this time frame appeared to have derived from a single introduction event into the state in late January or early February 2020 and subsequent local spread, strongly suggesting cryptic spread of COVID-19 during the months of January and February 2020, before active community surveillance was implemented. We estimate a common ancestor of this outbreak clade as occurring between 18 January and 9 February 2020. From genomic data, we estimate an exponential doubling between 2.4 and 5.1 days. These results highlight the need for large-scale community surveillance for SARS-CoV-2 introductions and spread and the power of pathogen genomics to inform epidemiological understanding.
    Keywords covid19
    Publisher medrxiv
    Document type Article ; Online
    DOI 10.1101/2020.04.02.20051417
    Database COVID19

    Kategorien

  8. Book ; Online: blab/ncov-cryptic-transmission

    Trevor Bedford

    Release 2020-05-31

    2020  

    Abstract: Cryptic transmission of SARS-CoV-2 in Washington State ...

    Abstract Cryptic transmission of SARS-CoV-2 in Washington State
    Keywords covid19
    Publishing date 2020-06-01
    Publishing country eu
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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