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  1. Article: The contrasting roles of aquatic fungi and oomycetes in the degradation and transformation of polymeric organic matter

    Masigol, Hossein / khodaparast, seyed Akbar / Rojas-Jimenez, Keilor / Fonvielle, Jeremy / Mostowfizadeh-Ghalamfarsa, Reza / Goldhammer, Tobias / Grossart, Hans-Peter

    Limnology and oceanography, 64:2662-78

    2019  

    Abstract: ... our study highlights the importance of both oomycetes and fungi in aquatic organic matter transformation and ... Studies on the ecological role of fungi and, to a lesser extent, oomycetes, are receiving ... in aquatic ecosystems. To unravel their importance in humification processes, we isolated several strains of fungi and ...

    Institution Leibniz-Institut für Gewässerökologie und Binnenfischerei
    Abstract Studies on the ecological role of fungi and, to a lesser extent, oomycetes, are receiving increasing attention, mainly due to their participation in the cycling of organic matter in aquatic ecosystems. To unravel their importance in humification processes, we isolated several strains of fungi and oomycetes from Anzali lagoon, Iran. We then performed taxonomic characterization by morphological and molecular methods, analyzed the ability to degrade several polymeric substrates, performed metabolic fingerprinting with Ecoplates, and determined the degradation of humic substances (HS) using liquid chromatography‐organic carbon detection. Our analyses highlighted the capacity of aquatic fungi to better degrade a plethora of organic molecules, including complex polymers. Specifically, we were able to demonstrate not only the utilization of these complex polymers, but also the role of fungi in the production of HS. In contrast, oomycetes, despite some morphological and physiological similarities with aquatic fungi, exhibited a propensity toward opportunism, quickly benefitting from the availability of small organic molecules, while exhibiting sensitivity toward more complex polymers. Despite their contrasting roles, our study highlights the importance of both oomycetes and fungi in aquatic organic matter transformation and cycling with potential implications for the global carbon cycle.
    Language English
    Document type Article
    Database Repository for Life Sciences

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  2. Article ; Online: Transformation of plant substrates by fungi Fomitopsis pinicola

    Mamaeva Olga O. / Isaeva Elena V. / Loskutov Sergey R. / Petrunina Elena A. / Fedorov Vladimir S. / Marchenko Roman A.

    E3S Web of Conferences, Vol 390, p

    2023  Volume 04003

    Abstract: ... of balsam poplar (Populus balsamifera L.) buds before and after bioconversion by Fp5-15 Fomitopsis pinicola fungi ... shown that under the action of the enzyme complex of fungi, easily and difficultly hydrolysable ...

    Abstract The results of chemical and thermal analysis of substrates based on the post-extraction residue of balsam poplar (Populus balsamifera L.) buds before and after bioconversion by Fp5-15 Fomitopsis pinicola fungi were compared. The thermal characteristics obtained using thermogravimetry (TG/DTG) methods are presented. The stages of thermal decomposition, their temperature intervals and the temperatures of the maxima on the DTG curves, as well as the weight loss of the samples, have been established. Studies have shown that under the action of the enzyme complex of fungi, easily and difficultly hydrolysable polysaccharides are utilized, and lignin substances also undergo changes.
    Keywords Environmental sciences ; GE1-350
    Language English
    Publishing date 2023-01-01T00:00:00Z
    Publisher EDP Sciences
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article ; Online: Biotransformation of chenodeoxycholic acid by human intestinal fungi and the agonistic effects on FXR.

    Wei, Xuemei / Yao, Changliang / He, Xin / Li, Jiayuan / Wang, Yulu / Wang, Chao / Chen, Qinhua / Ma, Xiaochi / Guo, De-An

    Phytochemistry

    2024  Volume 224, Page(s) 114162

    Abstract: ... This study shone a light on the diverse transformations of CDCA by intestinal fungi, unveiling potential ... we investigated the microbial transformations of CDCA by seven human intestinal fungal species. Our findings ...

    Abstract Bile acids play a vital role in modulating host metabolism, with chenodeoxycholic acid (CDCA) standing out as a primary bile acid that naturally activates farnesoid X receptor (FXR). In this study, we investigated the microbial transformations of CDCA by seven human intestinal fungal species. Our findings revealed that hydroxylation and dehydrogenation were the most prevalent metabolic pathways. Incubation of CDCA with Rhizopus microspores (PT2906) afforded eight undescribed compounds (6-13) alongside five known analogs (1-5) which were elucidated by HRESI-MS and NMR data. Notably, compounds 8, 12 and 13 exhibited an inhibitory effect on FXR in contrast to the FXR activation observed with CDCA in vitro assays. This study shone a light on the diverse transformations of CDCA by intestinal fungi, unveiling potential modulators of FXR activity with implications for host metabolism.
    Language English
    Publishing date 2024-05-24
    Publishing country England
    Document type Journal Article
    ZDB-ID 208884-8
    ISSN 1873-3700 ; 0031-9422
    ISSN (online) 1873-3700
    ISSN 0031-9422
    DOI 10.1016/j.phytochem.2024.114162
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Bioimmobilization and transformation of chromium and cadmium in the fungi-microalgae symbiotic system.

    Wang, Junjun / Tian, Qinghua / Cui, Linlin / Cheng, Jinju / Zhou, Hao / Zhang, Yejuan / Peng, Anan / Shen, Li

    Journal of hazardous materials

    2022  Volume 445, Page(s) 130507

    Abstract: Microalgae and fungi in the fungi-microalgae symbiotic system(FMSS) can solve the problems of deep ... However, at present, the immobilization and transformation mechanism of heavy metals in the FMSS is not clear ...

    Abstract Microalgae and fungi in the fungi-microalgae symbiotic system(FMSS) can solve the problems of deep purification of heavy metals in wastewater and harvesting of microalgae cell by synergistic interaction. Therefore, it is of great significance to use the FMSS for remediation of heavy metal pollution. However, at present, the immobilization and transformation mechanism of heavy metals in the FMSS is not clear, which limits the development and industrial application of the FMSS with high adsorption performance, high selectivity, and high tolerance. In this study, the FMSS constructed using Aspergillus funigatus and Synechocystis sp. PCC6803, was used as the research object to explore heavy metal adsorption performance. Under optimal conditions, the adsorption efficiencies of Cd(II) and Cr(VI) were as high as 90.02% and 80.03%, respectively. The adsorption process was controlled by both internal and external diffusion. Extracellular absorption was dominant, and intracellular absorption was secondary. XRD, XPS, SEM-EDX and TEM-EDX results revealed that ionic crystals and precipitates (Cd(OH)
    MeSH term(s) Cadmium/analysis ; Microalgae ; Symbiosis ; Chromium/chemistry ; Metals, Heavy/chemistry ; Adsorption ; Fungi ; Water Pollutants, Chemical/chemistry
    Chemical Substances chromium hexavalent ion (18540-29-9) ; Cadmium (00BH33GNGH) ; Chromium (0R0008Q3JB) ; Metals, Heavy ; Water Pollutants, Chemical
    Language English
    Publishing date 2022-12-01
    Publishing country Netherlands
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 1491302-1
    ISSN 1873-3336 ; 0304-3894
    ISSN (online) 1873-3336
    ISSN 0304-3894
    DOI 10.1016/j.jhazmat.2022.130507
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Polychlorinated Biphenyl Transformation, Peroxidase and Oxidase Activities of Fungi and Bacteria Isolated from a Historically Contaminated Site.

    Maucourt, Flavien / Doumèche, Bastien / Chapulliot, David / Vallon, Laurent / Nazaret, Sylvie / Fraissinet-Tachet, Laurence

    Microorganisms

    2023  Volume 11, Issue 8

    Abstract: ... Among 29 isolated fungi and 17 bacteria, this work reports for the first time the PCB-transforming ... capabilities from fungi affiliated to ... persistent organic pollutants still recovered all over the world. Microbial PCB biotransformation is a promising technique ...

    Abstract Causing major health and ecological disturbances, polychlorinated biphenyls (PCBs) are persistent organic pollutants still recovered all over the world. Microbial PCB biotransformation is a promising technique for depollution, but the involved molecular mechanisms remain misunderstood. Ligninolytic enzymes are suspected to be involved in many PCB transformations, but their assessments remain scarce. To further inventory the capabilities of microbes to transform PCBs through their ligninolytic enzymes, we investigated the role of oxidase and peroxidase among a set of microorganisms isolated from a historically PCB-contaminated site. Among 29 isolated fungi and 17 bacteria, this work reports for the first time the PCB-transforming capabilities from fungi affiliated to
    Language English
    Publishing date 2023-07-26
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2720891-6
    ISSN 2076-2607
    ISSN 2076-2607
    DOI 10.3390/microorganisms11081887
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Microbial transformation of osthole by human intestinal fungi and anti-osteoporosis activities of its metabolites.

    He, Xin / Nie, Min / Wang, Mengyuan / Wu, Shifei / Wei, Xuemei / Li, Jiayuan / Yao, Changliang / Wang, Chao / Ma, Xiaochi / Guo, De-An

    Fitoterapia

    2023  Volume 167, Page(s) 105510

    Abstract: ... intestinal fungi Mucor circinelloides. Six metabolites including three new metabolites (S2, S3, S4) were ... osteoporosis activity. In this work, the biotransformation of osthole was performed based on the human ... biotransformation reactions involved hydroxylation and glycosylation. In addition, all metabolites were evaluated ...

    Abstract Osthole is one of the major constituents in Cnidium monnieri (L.) Cuss. and possesses anti-osteoporosis activity. In this work, the biotransformation of osthole was performed based on the human intestinal fungi Mucor circinelloides. Six metabolites including three new metabolites (S2, S3, S4) were obtained, and their chemical structures were elucidated by spectroscopic data analysis. The major biotransformation reactions involved hydroxylation and glycosylation. In addition, all metabolites were evaluated for their anti-osteoporosis activity using MC3T3-E1 cells. The results demonstrated that S4, S5 and S6 could significantly promote MC3T3-E1 cell growth compared to osthole.
    MeSH term(s) Humans ; Molecular Structure ; Coumarins/pharmacology ; Cell Proliferation ; Fungi
    Chemical Substances osthol (XH1TI1759C) ; Coumarins
    Language English
    Publishing date 2023-04-17
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 412385-2
    ISSN 1873-6971 ; 0367-326X
    ISSN (online) 1873-6971
    ISSN 0367-326X
    DOI 10.1016/j.fitote.2023.105510
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Genetic transformation of fungi.

    He, Liya / Feng, Jiao / Lu, Sha / Chen, Zhiwen / Chen, Chunmei / He, Ya / Yi, Xiuwen / Xi, Liyan

    The International journal of developmental biology

    2017  Volume 61, Issue 6-7, Page(s) 375–381

    Abstract: ... development of transformation methods used for the genetic transformation of fungi, including ... of fungi, but their efficiencies are extremely low. To better study the functional genes of fungi, and ... to improve the characteristics of fungi in an easy, safe and reliable way, many investigations have been ...

    Abstract Transferring DNA into cells is an essential research method for molecular cloning and gene function studies. As molecular biology and materials physics develop, more and more new transformation methods have been applied to mammalian cells. Some techniques have been successfully developed for several types of fungi, but their efficiencies are extremely low. To better study the functional genes of fungi, and to improve the characteristics of fungi in an easy, safe and reliable way, many investigations have been conducted to effectively develop such technologies for a wide variety of species and to increase the efficiency and reproducibility of genetic transformation. The objective of this paper is to review the latest development of transformation methods used for the genetic transformation of fungi, including several promising transformation approaches, together with their advantages and drawbacks, which may open up novel methods for fungi research.
    Language English
    Publishing date 2017
    Publishing country Spain
    Document type Journal Article
    ZDB-ID 1036070-0
    ISSN 1696-3547 ; 0214-6282
    ISSN (online) 1696-3547
    ISSN 0214-6282
    DOI 10.1387/ijdb.160026lh
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Degradation Products of Polychlorinated Biphenyls and Their In Vitro Transformation by Ligninolytic Fungi.

    Šrédlová, Kamila / Šírová, Kateřina / Stella, Tatiana / Cajthaml, Tomáš

    Toxics

    2021  Volume 9, Issue 4

    Abstract: Metabolites of polychlorinated biphenyls (PCBs)-hydroxylated PCBs (OH-PCBs), chlorobenzyl alcohols (CB-OHs), and chlorobenzaldehydes (CB-CHOs)-were incubated in vitro with the extracellular liquid ... ...

    Abstract Metabolites of polychlorinated biphenyls (PCBs)-hydroxylated PCBs (OH-PCBs), chlorobenzyl alcohols (CB-OHs), and chlorobenzaldehydes (CB-CHOs)-were incubated in vitro with the extracellular liquid of
    Language English
    Publishing date 2021-04-08
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2733883-6
    ISSN 2305-6304 ; 2305-6304
    ISSN (online) 2305-6304
    ISSN 2305-6304
    DOI 10.3390/toxics9040081
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Multienzymatic biotransformation of flavokawain B by entomopathogenic filamentous fungi: structural modifications and pharmacological predictions.

    Chlipała, Paweł / Tronina, Tomasz / Dymarska, Monika / Urbaniak, Monika / Kozłowska, Ewa / Stępień, Łukasz / Kostrzewa-Susłow, Edyta / Janeczko, Tomasz

    Microbial cell factories

    2024  Volume 23, Issue 1, Page(s) 65

    Abstract: ... that entomopathogenic filamentous fungi from the genera Isaria and Beauveria can perform O-methylglycosylation ... filamentous fungi, elucidating the structural modifications and predicting potential pharmacological activities ... In the present study, we examined the ability of entomopathogenic filamentous fungal strains ...

    Abstract Background: Flavokawain B is one of the naturally occurring chalcones in the kava plant (Piper methysticum). It exhibits anticancer, anti-inflammatory and antimalarial properties. Due to its therapeutic potential, flavokawain B holds promise for the treatment of many diseases. However, due to its poor bioavailability and low aqueous solubility, its application remains limited. The attachment of a sugar unit impacts the stability and solubility of flavonoids and often determines their bioavailability and bioactivity. Biotransformation is an environmentally friendly way to improve the properties of compounds, for example, to increase their hydrophilicity and thus affect their bioavailability. Recent studies proved that entomopathogenic filamentous fungi from the genera Isaria and Beauveria can perform O-methylglycosylation of hydroxyflavonoids or O-demethylation and hydroxylation of selected chalcones and flavones.
    Results: In the present study, we examined the ability of entomopathogenic filamentous fungal strains of Beauveria bassiana, Beauveria caledonica, Isaria farinosa, Isaria fumosorosea, and Isaria tenuipes to transform flavokawain B into its glycosylated derivatives. The main process occurring during the reaction is O-demethylation and/or hydroxylation followed by 4-O-methylglycosylation. The substrate used was characterized by low susceptibility to transformations compared to our previously described transformations of flavones and chalcones in the cultures of the tested strains. However, in the culture of the B. bassiana KCh J1.5 and BBT, Metarhizium robertsii MU4, and I. tenuipes MU35, the expected methylglycosides were obtained with high yields. Cheminformatic analyses indicated altered physicochemical and pharmacokinetic properties in the derivatives compared to flavokawain B. Pharmacological predictions suggested potential anticarcinogenic activity, caspase 3 stimulation, and antileishmanial effects.
    Conclusions: In summary, the study provided valuable insights into the enzymatic transformations of flavokawain B by entomopathogenic filamentous fungi, elucidating the structural modifications and predicting potential pharmacological activities of the obtained derivatives. The findings contribute to the understanding of the biocatalytic capabilities of these microbial cultures and the potential therapeutic applications of the modified flavokawain B derivatives.
    MeSH term(s) Chalcones ; Flavonoids/metabolism ; Flavones/metabolism ; Biotransformation
    Chemical Substances flavokawain B ; Chalcones ; Flavonoids ; Flavones
    Language English
    Publishing date 2024-02-24
    Publishing country England
    Document type Journal Article
    ZDB-ID 2091377-1
    ISSN 1475-2859 ; 1475-2859
    ISSN (online) 1475-2859
    ISSN 1475-2859
    DOI 10.1186/s12934-024-02338-9
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Methods for genetic transformation of filamentous fungi.

    Li, Dandan / Tang, Yu / Lin, Jun / Cai, Weiwen

    Microbial cell factories

    2017  Volume 16, Issue 1, Page(s) 168

    Abstract: ... for fungal genome modification. Up to date, there are some general methods of genetic transformation for fungi ... Filamentous fungi have been of great interest because of their excellent ability as cell factories ... to manufacture useful products for human beings. The development of genetic transformation techniques is ...

    Abstract Filamentous fungi have been of great interest because of their excellent ability as cell factories to manufacture useful products for human beings. The development of genetic transformation techniques is a precondition that enables scientists to target and modify genes efficiently and may reveal the function of target genes. The method to deliver foreign nucleic acid into cells is the sticking point for fungal genome modification. Up to date, there are some general methods of genetic transformation for fungi, including protoplast-mediated transformation, Agrobacterium-mediated transformation, electroporation, biolistic method and shock-wave-mediated transformation. This article reviews basic protocols and principles of these transformation methods, as well as their advantages and disadvantages.
    MeSH term(s) Agrobacterium/genetics ; Biolistics/methods ; Electroporation ; Fungi/genetics ; Gene Transfer Techniques ; Genetic Techniques ; Genome, Fungal ; Protoplasts ; Transformation, Genetic
    Language English
    Publishing date 2017-10-03
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 2091377-1
    ISSN 1475-2859 ; 1475-2859
    ISSN (online) 1475-2859
    ISSN 1475-2859
    DOI 10.1186/s12934-017-0785-7
    Database MEDical Literature Analysis and Retrieval System OnLINE

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