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Article: Genomic epidemiology of a densely sampled COVID-19 outbreak in China.

Geidelberg, Lily / Boyd, Olivia / Jorgensen, David / Siveroni, Igor / Nascimento, Fabrícia F / Johnson, Robert / Ragonnet-Cronin, Manon / Fu, Han / Wang, Haowei / Xi, Xiaoyue / Chen, Wei / Liu, Dehui / Chen, Yingying / Tian, Mengmeng / Tan, Wei / Zai, Junjie / Sun, Wanying / Li, Jiandong / Li, Junhua /
Volz, Erik M / Li, Xingguang / Nie, Qing

Virus evolution

2021  Volume 7, Issue 1, Page(s) veaa102

Abstract: ... constrained outbreak in Weifang, People's Republic of China. Using Bayesian model-based phylodynamic methods ... origins, worldwide dispersal, and epidemiological history. With few exceptions, genomic epidemiological ...

Abstract Analysis of genetic sequence data from the SARS-CoV-2 pandemic can provide insights into epidemic origins, worldwide dispersal, and epidemiological history. With few exceptions, genomic epidemiological analysis has focused on geographically distributed data sets with few isolates in any given location. Here, we report an analysis of 20 whole SARS- CoV-2 genomes from a single relatively small and geographically constrained outbreak in Weifang, People's Republic of China. Using Bayesian model-based phylodynamic methods, we estimate a mean basic reproduction number (
Language English
Publishing date 2021-03-14
Publishing country England
Document type Journal Article
ZDB-ID 2818949-8
ISSN 2057-1577
ISSN 2057-1577
DOI 10.1093/ve/veaa102
Database MEDical Literature Analysis and Retrieval System OnLINE

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