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  1. Article ; Online: Oxygen sensing strategies in mammals and bacteria.

    Taabazuing, Cornelius Y / Hangasky, John A / Knapp, Michael J

    Journal of inorganic biochemistry

    2014  Volume 133, Page(s) 63–72

    Abstract: ... utilized by mammals and bacteria to sense hypoxia. While responses to acute hypoxia in mammalian tissues ... in both bacteria and humans. As specific molecular machinery becomes identified, these hypoxia sensing pathways ... In contrast to mammals, bacterial O2-sensing relies on protein cofactors that either bind O2 or oxidatively ...

    Abstract The ability to sense and adapt to changes in pO2 is crucial for basic metabolism in most organisms, leading to elaborate pathways for sensing hypoxia (low pO2). This review focuses on the mechanisms utilized by mammals and bacteria to sense hypoxia. While responses to acute hypoxia in mammalian tissues lead to altered vascular tension, the molecular mechanism of signal transduction is not well understood. In contrast, chronic hypoxia evokes cellular responses that lead to transcriptional changes mediated by the hypoxia inducible factor (HIF), which is directly controlled by post-translational hydroxylation of HIF by the non-heme Fe(II)/αKG-dependent enzymes FIH and PHD2. Research on PHD2 and FIH is focused on developing inhibitors and understanding the links between HIF binding and the O2 reaction in these enzymes. Sulfur speciation is a putative mechanism for acute O2-sensing, with special focus on the role of H2S. This sulfur-centered model is discussed, as are some of the directions for further refinement of this model. In contrast to mammals, bacterial O2-sensing relies on protein cofactors that either bind O2 or oxidatively decompose. The sensing modality for bacterial O2-sensors is either via altered DNA binding affinity of the sensory protein, or else due to the actions of a two-component signaling cascade. Emerging data suggests that proteins containing a hemerythrin-domain, such as FBXL5, may serve to connect iron sensing to O2-sensing in both bacteria and humans. As specific molecular machinery becomes identified, these hypoxia sensing pathways present therapeutic targets for diseases including ischemia, cancer, or bacterial infection.
    MeSH term(s) Animals ; Bacteria/metabolism ; Heme/metabolism ; Humans ; Hypoxia/genetics ; Hypoxia/metabolism ; Hypoxia-Inducible Factor 1/genetics ; Hypoxia-Inducible Factor 1/metabolism ; Hypoxia-Inducible Factor-Proline Dioxygenases/metabolism ; Mammals/metabolism ; Oxygen/metabolism ; Signal Transduction/genetics
    Chemical Substances Hypoxia-Inducible Factor 1 ; Heme (42VZT0U6YR) ; EGLN1 protein, human (EC 1.14.11.2) ; Hypoxia-Inducible Factor-Proline Dioxygenases (EC 1.14.11.29) ; Oxygen (S88TT14065)
    Language English
    Publishing date 2014-01-03
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Review
    ZDB-ID 162843-4
    ISSN 1873-3344 ; 0162-0134
    ISSN (online) 1873-3344
    ISSN 0162-0134
    DOI 10.1016/j.jinorgbio.2013.12.010
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Heme oxygenase reveals its strategy for catalyzing three successive oxygenation reactions.

    Matsui, Toshitaka / Unno, Masaki / Ikeda-Saito, Masao

    Accounts of chemical research

    2010  Volume 43, Issue 2, Page(s) 240–247

    Abstract: ... IXalpha, CO, and free iron. In mammals, HO has a variety of physiological functions, including heme ... catabolism, iron homeostasis, antioxidant defense, cellular signaling, and O(2) sensing. The enzyme is also ... found in plants (producing light-harvesting pigments) and in some pathogenic bacteria, where it acquires ...

    Abstract Heme oxygenase (HO) is an enzyme that catalyzes the regiospecific conversion of heme to biliverdin IXalpha, CO, and free iron. In mammals, HO has a variety of physiological functions, including heme catabolism, iron homeostasis, antioxidant defense, cellular signaling, and O(2) sensing. The enzyme is also found in plants (producing light-harvesting pigments) and in some pathogenic bacteria, where it acquires iron from the host heme. The HO-catalyzed heme conversion proceeds through three successive oxygenations, a process that has attracted considerable attention because of its reaction mechanism and physiological importance. The HO reaction is unique in that all three O(2) activations are affected by the substrate itself. The first step is the regiospecific self-hydroxylation of the porphyrin alpha-meso carbon atom. The resulting alpha-meso-hydroxyheme reacts in the second step with another O(2) to yield verdoheme and CO. The third O(2) activation, by verdoheme, cleaves its porphyrin macrocycle to release biliverdin and free ferrous iron. In this Account, we provide an overview of our current understanding of the structural and biochemical properties of the complex self-oxidation reactions in HO catalysis. The first meso-hydroxylation is of particular interest because of its distinct contrast with O(2) activation by cytochrome P450. Although most heme enzymes oxidize exogenous substrates by high-valent oxo intermediates, HO was proposed to utilize the Fe-OOH intermediate for the self-hydroxylation. We have succeeded in preparing and characterizing the Fe-OOH species of HO at low temperature, and an analysis of its reaction, together with mutational and crystallographic studies, reveals that protonation of Fe-OOH by a distal water molecule is critical in promoting the unique self-hydroxylation. The second oxygenation is a rapid, spontaneous auto-oxidation of the reactive alpha-meso-hydroxyheme; its mechanism remains elusive, but the HO enzyme has been shown not to play a critical role in it. Until recently, the means of the third O(2) activation had remained unclear as well, but we have recently untangled its mechanistic outline. Reaction analysis of the verdoheme-HO complex strongly suggests the Fe-OOH species as a key intermediate of the ring-opening reaction. This mechanism is very similar to that of the first meso-hydroxylation, including the critical roles of the distal water molecule. A comprehensive study of the three oxygenations of HO highlights the rational design of the enzyme architecture and its catalytic mechanism. Elucidation of the last oxygenation step has enabled a kinetic analysis of the rate-determining step, making it possible to discuss the HO reaction mechanism in relation to its physiological functions.
    MeSH term(s) Animals ; Biocatalysis ; Heme/chemistry ; Heme/metabolism ; Heme Oxygenase (Decyclizing)/chemistry ; Heme Oxygenase (Decyclizing)/metabolism ; Humans ; Oxidation-Reduction ; Oxygen/chemistry ; Oxygen/metabolism ; Substrate Specificity
    Chemical Substances Heme (42VZT0U6YR) ; Heme Oxygenase (Decyclizing) (EC 1.14.14.18) ; Oxygen (S88TT14065)
    Language English
    Publishing date 2010-02-16
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 1483291-4
    ISSN 1520-4898 ; 0001-4842
    ISSN (online) 1520-4898
    ISSN 0001-4842
    DOI 10.1021/ar9001685
    Database MEDical Literature Analysis and Retrieval System OnLINE

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