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  1. Article ; Online: Transmission dynamics and control of COVID-19 in Chile, March-October, 2020.

    Tariq, Amna / Undurraga, Eduardo A / Laborde, Carla Castillo / Vogt-Geisse, Katia / Luo, Ruiyan / Rothenberg, Richard / Chowell, Gerardo

    PLoS neglected tropical diseases

    2021  Volume 15, Issue 1, Page(s) e0009070

    Abstract: Since the detection of the first case of COVID-19 in Chile on March 3rd, 2020, a total of 513,188 ... dynamics of COVID-19. Chile's incidence curve displays early sub-exponential growth dynamics ... the reproduction number throughout the epidemic in Chile and study the effectiveness of control interventions ...

    Abstract Since the detection of the first case of COVID-19 in Chile on March 3rd, 2020, a total of 513,188 cases, including ~14,302 deaths have been reported in Chile as of November 2nd, 2020. Here, we estimate the reproduction number throughout the epidemic in Chile and study the effectiveness of control interventions especially the effectiveness of lockdowns by conducting short-term forecasts based on the early transmission dynamics of COVID-19. Chile's incidence curve displays early sub-exponential growth dynamics with the deceleration of growth parameter, p, estimated at 0.8 (95% CI: 0.7, 0.8) and the reproduction number, R, estimated at 1.8 (95% CI: 1.6, 1.9). Our findings indicate that the control measures at the start of the epidemic significantly slowed down the spread of the virus. However, the relaxation of restrictions and spread of the virus in low-income neighborhoods in May led to a new surge of infections, followed by the reimposition of lockdowns in Greater Santiago and other municipalities. These measures have decelerated the virus spread with R estimated at ~0.96 (95% CI: 0.95, 0.98) as of November 2nd, 2020. The early sub-exponential growth trend (p ~0.8) of the COVID-19 epidemic transformed into a linear growth trend (p ~0.5) as of July 7th, 2020, after the reimposition of lockdowns. While the broad scale social distancing interventions have slowed the virus spread, the number of new COVID-19 cases continue to accrue, underscoring the need for persistent social distancing and active case detection and isolation efforts to maintain the epidemic under control.
    MeSH term(s) Basic Reproduction Number ; COVID-19/diagnosis ; COVID-19/epidemiology ; COVID-19/prevention & control ; COVID-19/transmission ; Chile/epidemiology ; Epidemics/prevention & control ; Humans ; Incidence ; Models, Biological ; Physical Distancing
    Language English
    Publishing date 2021-01-22
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 2429704-5
    ISSN 1935-2735 ; 1935-2735
    ISSN (online) 1935-2735
    ISSN 1935-2735
    DOI 10.1371/journal.pntd.0009070
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Transmission dynamics and control of COVID-19 in Chile, March-October, 2020.

    Tariq, Amna / Undurraga, Eduardo A / Laborde, Carla Castillo / Vogt-Geisse, Katia / Luo, Ruiyan / Rothenberg, Richard / Chowell, Gerardo

    medRxiv : the preprint server for health sciences

    2020  

    Abstract: Since the detection of the first case of COVID-19 in Chile on March 3rd, 2020, a total of 513188 ... dynamics of COVID-19. Chile's incidence curve displays early sub-exponential growth dynamics ... the reproduction number throughout the epidemic in Chile and study the effectiveness of control interventions ...

    Abstract Since the detection of the first case of COVID-19 in Chile on March 3rd, 2020, a total of 513188 cases, including ~14302 deaths have been reported in Chile as of November 2nd, 2020. Here, we estimate the reproduction number throughout the epidemic in Chile and study the effectiveness of control interventions especially the effectiveness of lockdowns by conducting short-term forecasts based on the early transmission dynamics of COVID-19. Chile's incidence curve displays early sub-exponential growth dynamics with the deceleration of growth parameter, p, estimated at 0.8 (95% CI: 0.7, 0.8) and the reproduction number, R, estimated at 1.8 (95% CI: 1.6, 1.9). Our findings indicate that the control measures at the start of the epidemic significantly slowed down the spread of the virus. However, the relaxation of restrictions and spread of the virus in low-income neighborhoods in May led to a new surge of infections, followed by the reimposition of lockdowns in Greater Santiago and other municipalities. These measures have decelerated the virus spread with R estimated at ~0.96( 95% CI: 0.95, 0.98) as of November 2nd, 2020. The early sub-exponential growth trend (p ~0.8) of the COVID-19 epidemic transformed into a linear growth trend (p ~0.5) as of July 7th, 2020, after the reimposition of lockdowns. While the broad scale social distancing interventions have slowed the virus spread, the number of new COVID-19 cases continue to accrue, underscoring the need for persistent social distancing and active case detection and isolation efforts to maintain the epidemic under control.
    Language English
    Publishing date 2020-12-15
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2020.05.15.20103069
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Transmission dynamics and control of COVID-19 in Chile, March-October, 2020.

    Amna Tariq / Eduardo A Undurraga / Carla Castillo Laborde / Katia Vogt-Geisse / Ruiyan Luo / Richard Rothenberg / Gerardo Chowell

    PLoS Neglected Tropical Diseases, Vol 15, Iss 1, p e

    2021  Volume 0009070

    Abstract: Since the detection of the first case of COVID-19 in Chile on March 3rd, 2020, a total of 513,188 ... dynamics of COVID-19. Chile's incidence curve displays early sub-exponential growth dynamics ... the reproduction number throughout the epidemic in Chile and study the effectiveness of control interventions ...

    Abstract Since the detection of the first case of COVID-19 in Chile on March 3rd, 2020, a total of 513,188 cases, including ~14,302 deaths have been reported in Chile as of November 2nd, 2020. Here, we estimate the reproduction number throughout the epidemic in Chile and study the effectiveness of control interventions especially the effectiveness of lockdowns by conducting short-term forecasts based on the early transmission dynamics of COVID-19. Chile's incidence curve displays early sub-exponential growth dynamics with the deceleration of growth parameter, p, estimated at 0.8 (95% CI: 0.7, 0.8) and the reproduction number, R, estimated at 1.8 (95% CI: 1.6, 1.9). Our findings indicate that the control measures at the start of the epidemic significantly slowed down the spread of the virus. However, the relaxation of restrictions and spread of the virus in low-income neighborhoods in May led to a new surge of infections, followed by the reimposition of lockdowns in Greater Santiago and other municipalities. These measures have decelerated the virus spread with R estimated at ~0.96 (95% CI: 0.95, 0.98) as of November 2nd, 2020. The early sub-exponential growth trend (p ~0.8) of the COVID-19 epidemic transformed into a linear growth trend (p ~0.5) as of July 7th, 2020, after the reimposition of lockdowns. While the broad scale social distancing interventions have slowed the virus spread, the number of new COVID-19 cases continue to accrue, underscoring the need for persistent social distancing and active case detection and isolation efforts to maintain the epidemic under control.
    Keywords Arctic medicine. Tropical medicine ; RC955-962 ; Public aspects of medicine ; RA1-1270
    Subject code 612
    Language English
    Publishing date 2021-01-01T00:00:00Z
    Publisher Public Library of Science (PLoS)
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  4. Article ; Online: Adaptive behaviors and vaccination on curbing COVID-19 transmission: Modeling simulations in eight countries.

    Li, Zhaowan / Zhao, Jianguo / Zhou, Yuhao / Tian, Lina / Liu, Qihuai / Zhu, Huaiping / Zhu, Guanghu

    Journal of theoretical biology

    2022  Volume 559, Page(s) 111379

    Abstract: ... the model with surveillance data during March 2020 and October 2021 in America, India, South Africa ... of a theme issue on "Modelling COVID-19 and Preparedness for Future Pandemics". ... Current persistent outbreak of COVID-19 is triggering a series of collective responses to avoid ...

    Abstract Current persistent outbreak of COVID-19 is triggering a series of collective responses to avoid infection. To further clarify the impact mechanism of adaptive protection behavior and vaccination, we developed a new transmission model via a delay differential system, which parameterized the roles of adaptive behaviors and vaccination, and allowed to simulate the dynamic infection process among people. By validating the model with surveillance data during March 2020 and October 2021 in America, India, South Africa, Philippines, Brazil, UK, Spain and Germany, we quantified the protection effect of adaptive behaviors by different forms of activity function. The modeling results indicated that (1) the adaptive activity function can be used as a good indicator for fitting the intervention outcome, which exhibited short-term awareness in these countries, and it could reduce the total human infections by 3.68, 26.16, 15.23, 4.23, 7.26, 1.65, 5.51 and 7.07 times, compared with the reporting; (2) for complete prevention, the average proportions of people with immunity should be larger than 90%, 92%, 86%, 71%, 92%, 84%, 82% and 76% with adaptive protection behaviors, or 91%, 97%, 94%, 77%, 92%, 88%, 85% and 90% without protection behaviors; and (3) the required proportion of humans being vaccinated is a sub-linear decreasing function of vaccine efficiency, with small heterogeneity in different countries. This manuscript was submitted as part of a theme issue on "Modelling COVID-19 and Preparedness for Future Pandemics".
    MeSH term(s) Humans ; COVID-19/epidemiology ; COVID-19/prevention & control ; Vaccination ; Brazil/epidemiology ; Philippines ; Adaptation, Psychological
    Language English
    Publishing date 2022-12-07
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2972-5
    ISSN 1095-8541 ; 0022-5193
    ISSN (online) 1095-8541
    ISSN 0022-5193
    DOI 10.1016/j.jtbi.2022.111379
    Database MEDical Literature Analysis and Retrieval System OnLINE

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