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  1. Article ; Online: Clustering of trauma patients based on longitudinal data and the application of machine learning to predict recovery.

    Stoitsas, Kostas / Bahulikar, Saurabh / de Munter, Leonie / de Jongh, Mariska A C / Jansen, Maria A C / Jung, Merel M / van Wingerden, Marijn / Van Deun, Katrijn

    Scientific reports

    2022  Volume 12, Issue 1, Page(s) 16990

    Abstract: Predicting recovery after trauma is important to provide patients a perspective on their estimated future health, to engage in shared decision making and target interventions to relevant patient groups. In the present study, several unsupervised ... ...

    Abstract Predicting recovery after trauma is important to provide patients a perspective on their estimated future health, to engage in shared decision making and target interventions to relevant patient groups. In the present study, several unsupervised techniques are employed to cluster patients based on longitudinal recovery profiles. Subsequently, these data-driven clusters were assessed on clinical validity by experts and used as targets in supervised machine learning models. We present a formalised analysis of the obtained clusters that incorporates evaluation of (i) statistical and machine learning metrics, (ii) clusters clinical validity with descriptive statistics and medical expertise. Clusters quality assessment revealed that clusters obtained through a Bayesian method (High Dimensional Supervised Classification and Clustering) and a Deep Gaussian Mixture model, in combination with oversampling and a Random Forest for supervised learning of the cluster assignments provided among the most clinically sensible partitioning of patients. Other methods that obtained higher classification accuracy suffered from cluster solutions with large majority classes or clinically less sensible classes. Models that used just physical or a mix of physical and psychological outcomes proved to be among the most sensible, suggesting that clustering on psychological outcomes alone yields recovery profiles that do not conform to known risk factors.
    MeSH term(s) Bayes Theorem ; Cluster Analysis ; Humans ; Machine Learning ; Risk Factors ; Supervised Machine Learning
    Language English
    Publishing date 2022-10-10
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-022-21390-2
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: "William Tell" injury: MDCT of an arrow through the head.

    de Jongh, Katrijn / Dohmen, Dinska / Salgado, Rodrigo / Ozsarlak, Ozkan / Van Goethem, Johan W M / Beaucourt, Luc / Jorens, Philippe G / Van Havenbergh, Tony W / De Schepper, Arthur M / Parizel, Paul M

    AJR. American journal of roentgenology

    2004  Volume 182, Issue 6, Page(s) 1551–1553

    MeSH term(s) Brain Injuries/diagnostic imaging ; Head Injuries, Penetrating/diagnostic imaging ; Humans ; Tomography, X-Ray Computed ; Wounds, Stab/diagnostic imaging
    Language English
    Publishing date 2004-06
    Publishing country United States
    Document type Case Reports ; Journal Article ; Review
    ZDB-ID 82076-3
    ISSN 1546-3141 ; 0361-803X ; 0092-5381
    ISSN (online) 1546-3141
    ISSN 0361-803X ; 0092-5381
    DOI 10.2214/ajr.182.6.1821551
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Exploration of Pyrido[3,4-

    Van Hoof, Max / Claes, Sandra / Boon, Katrijn / Van Loy, Tom / Schols, Dominique / Dehaen, Wim / De Jonghe, Steven

    Molecules (Basel, Switzerland)

    2023  Volume 28, Issue 5

    Abstract: Upregulated CXCR2 signalling is found in numerous inflammatory, autoimmune and neurodegenerative diseases, as well as in cancer. Consequently, CXCR2 antagonism is a promising therapeutic strategy for treatment of these disorders. We previously identified, ...

    Abstract Upregulated CXCR2 signalling is found in numerous inflammatory, autoimmune and neurodegenerative diseases, as well as in cancer. Consequently, CXCR2 antagonism is a promising therapeutic strategy for treatment of these disorders. We previously identified, via scaffold hopping, a pyrido[3,4-
    MeSH term(s) Humans ; Neoplasms ; Pyrimidines/chemistry ; Receptors, Chemokine/antagonists & inhibitors ; Structure-Activity Relationship ; Receptors, Interleukin-8B/antagonists & inhibitors
    Chemical Substances Pyrimidines ; Receptors, Chemokine ; CXCR2 protein, human ; Receptors, Interleukin-8B
    Language English
    Publishing date 2023-02-23
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 1413402-0
    ISSN 1420-3049 ; 1431-5165 ; 1420-3049
    ISSN (online) 1420-3049
    ISSN 1431-5165 ; 1420-3049
    DOI 10.3390/molecules28052099
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Exploration of Pyrido[3,4- d ]pyrimidines as Antagonists of the Human Chemokine Receptor CXCR2

    Max Van Hoof / Sandra Claes / Katrijn Boon / Tom Van Loy / Dominique Schols / Wim Dehaen / Steven De Jonghe

    Molecules, Vol 28, Iss 2099, p

    2023  Volume 2099

    Abstract: Upregulated CXCR2 signalling is found in numerous inflammatory, autoimmune and neurodegenerative diseases, as well as in cancer. Consequently, CXCR2 antagonism is a promising therapeutic strategy for treatment of these disorders. We previously identified, ...

    Abstract Upregulated CXCR2 signalling is found in numerous inflammatory, autoimmune and neurodegenerative diseases, as well as in cancer. Consequently, CXCR2 antagonism is a promising therapeutic strategy for treatment of these disorders. We previously identified, via scaffold hopping, a pyrido[3,4- d ]pyrimidine analogue as a promising CXCR2 antagonist with an IC 50 value of 0.11 µM in a kinetic fluorescence-based calcium mobilization assay. This study aims at exploring the structure–activity relationship (SAR) and improving the CXCR2 antagonistic potency of this pyrido[3,4- d ]pyrimidine via systematic structural modifications of the substitution pattern. Almost all new analogues completely lacked the CXCR2 antagonism, the exception being a 6-furanyl-pyrido[3,4- d ]pyrimidine analogue (compound 17b ) that is endowed with similar antagonistic potency as the original hit.
    Keywords CXCR2 antagonists ; pyrido[3,4- d ]pyrimidines ; SAR study ; Organic chemistry ; QD241-441
    Language English
    Publishing date 2023-02-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  5. Article ; Online: Identification of novel chemotypes as CXCR2 antagonists via a scaffold hopping approach from a thiazolo[4,5-d]pyrimidine.

    Van Hoof, Max / Boon, Katrijn / Van Loy, Tom / Schols, Dominique / Dehaen, Wim / De Jonghe, Steven

    European journal of medicinal chemistry

    2022  Volume 235, Page(s) 114268

    Abstract: The chemokine receptor CXCR2 and its ligands mediate neutrophil migration to the inflammation site, function as growth factors in many tumor cells and are involved in angiogenesis. Moreover, CXCR2 mediated recruitment of myeloid-derived suppressor cells ... ...

    Abstract The chemokine receptor CXCR2 and its ligands mediate neutrophil migration to the inflammation site, function as growth factors in many tumor cells and are involved in angiogenesis. Moreover, CXCR2 mediated recruitment of myeloid-derived suppressor cells results in tumor immunosuppression. Consequently, CXCR2 antagonism is a promising strategy for cancer immunotherapy and treatment of inflammatory disorders. Over a decade ago, several thiazolo[4,5-d]pyrimidines were reported as potent CXCR2 antagonists. Optimization of this scaffold focused mainly on the ring substituents, while the aromatic core was mostly unexplored. In this study, a scaffold hopping strategy was applied to the unsubstituted thiazolo moiety. Fourteen novel bicyclic heteroaromatic and cycloaliphatic systems were prepared and evaluated for CXCR2 antagonism using binding and calcium mobilization assays. This study revealed that the triazolo[4,5-d]pyrimidine, the isoxazolo[5,4-d]pyrimidine and the pyrido[3,4-d]pyrimidine scaffolds were endowed with IC
    MeSH term(s) Cell Movement ; Pyrimidines/pharmacology ; Receptors, Interleukin-8B ; Structure-Activity Relationship
    Chemical Substances Pyrimidines ; Receptors, Interleukin-8B ; pyrimidine (K8CXK5Q32L)
    Language English
    Publishing date 2022-03-12
    Publishing country France
    Document type Journal Article
    ZDB-ID 188597-2
    ISSN 1768-3254 ; 0009-4374 ; 0223-5234
    ISSN (online) 1768-3254
    ISSN 0009-4374 ; 0223-5234
    DOI 10.1016/j.ejmech.2022.114268
    Database MEDical Literature Analysis and Retrieval System OnLINE

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