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  1. Article: The Hao-Fountain syndrome protein USP7 regulates neuronal connectivity in the brain via a novel p53-independent ubiquitin signaling pathway.

    Chen, Hao / Ferguson, Cole J / Mitchell, Dylan C / Titus, Amanda / Paulo, Joao A / Hwang, Andrew / Lin, Tsen-Hsuan / Yano, Hiroko / Gu, Wei / Song, Sheng-Kwei / Yuede, Carla M / Gygi, Steven P / Bonni, Azad / Kim, Albert H

    bioRxiv : the preprint server for biology

    2024  

    Abstract: ... the Hao-Fountain syndrome (HAFOUS), characterized by developmental delay, intellectual disability, autism ...

    Abstract Precise control of protein ubiquitination is essential for brain development, and hence, disruption of ubiquitin signaling networks can lead to neurological disorders. Mutations of the deubiquitinase USP7 cause the Hao-Fountain syndrome (HAFOUS), characterized by developmental delay, intellectual disability, autism, and aggressive behavior. Here, we report that conditional deletion of USP7 in excitatory neurons in the mouse forebrain triggers diverse phenotypes including sensorimotor deficits, learning and memory impairment, and aggressive behavior, resembling clinical features of HAFOUS. USP7 deletion induces neuronal apoptosis in a manner dependent of the tumor suppressor p53. However, most behavioral abnormalities in USP7 conditional mice persist despite p53 loss. Strikingly, USP7 deletion in the brain perturbs the synaptic proteome and dendritic spine morphogenesis independently of p53. Integrated proteomics analysis reveals that the neuronal USP7 interactome is enriched for proteins implicated in neurodevelopmental disorders and specifically identifies the RNA splicing factor Ppil4 as a novel neuronal substrate of USP7. Knockdown of Ppil4 in cortical neurons impairs dendritic spine morphogenesis, phenocopying the effect of USP7 loss on dendritic spines. These findings reveal a novel USP7-Ppil4 ubiquitin signaling link that regulates neuronal connectivity in the developing brain, with implications for our understanding of the pathogenesis of HAFOUS and other neurodevelopmental disorders.
    Language English
    Publishing date 2024-01-13
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2023.10.24.563880
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Pan-Genomic and Transcriptomic Analyses of Marine Pseudoalteromonas agarivorans Hao 2018 Revealed Its Genomic and Metabolic Features

    Yuhao Jv / Chenxiang Xi / Yanqiu Zhao / Wei Wang / Yiling Zhang / Kai Liu / Wenlin Liu / Kai Shan / Chunlei Wang / Ruiwen Cao / Cunxi Dai / Yiting Jv / Wenxing Zhu / Haiyong Wang / Qiuxia He / Lujiang Hao

    Marine Drugs, Vol 20, Iss 248, p

    2022  Volume 248

    Abstract: The genomic and carbohydrate metabolic features of Pseudoalteromonas agarivorans Hao 2018 ( P ... agarivorans Hao 2018) were investigated through pan-genomic and transcriptomic analyses, and key enzyme genes ... with the stationary phase (24 h), strain P. agarivorans Hao 2018 had upregulated expression of genes related ...

    Abstract The genomic and carbohydrate metabolic features of Pseudoalteromonas agarivorans Hao 2018 ( P. agarivorans Hao 2018) were investigated through pan-genomic and transcriptomic analyses, and key enzyme genes that may encode the process involved in its extracellular polysaccharide synthesis were screened. The pan-genome of the P. agarivorans strains consists of a core-genome containing 2331 genes, an accessory-genome containing 956 genes, and a unique-genome containing 1519 genes. Clusters of Orthologous Groups analyses showed that P. agarivorans harbors strain-specifically diverse metabolisms, probably representing high evolutionary genome changes. The Kyoto Encyclopedia of Genes and Genomes and reconstructed carbohydrate metabolic pathways displayed that P. agarivorans strains can utilize a variety of carbohydrates, such as d -glucose, d -fructose, and d -lactose. Analyses of differentially expressed genes showed that compared with the stationary phase (24 h), strain P. agarivorans Hao 2018 had upregulated expression of genes related to the synthesis of extracellular polysaccharides in the logarithmic growth phase (2 h), and that the expression of these genes affected extracellular polysaccharide transport, nucleotide sugar synthesis, and glycosyltransferase synthesis. This is the first investigation of the genomic and metabolic features of P. agarivorans through pan-genomic and transcriptomic analyses, and these intriguing discoveries provide the possibility to produce novel marine drug lead compounds with high biological activity.
    Keywords Pseudoalteromonas agarivorans ; pan-genome ; genomic and metabolic features ; KEGG analysis ; transcriptome analysis ; Biology (General) ; QH301-705.5
    Subject code 570
    Language English
    Publishing date 2022-03-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article ; Online: A tribute to Hao-Ran Lin: Endocrine control of development, growth and reproduction in fish.

    Hu, Hongxia / Ge, Wei / Trudeau, Vance L

    General and comparative endocrinology

    2021  Volume 315, Page(s) 113931

    MeSH term(s) Animals ; Endocrine Disruptors/pharmacology ; Endocrine System ; Fishes ; History, 21st Century ; Reproduction ; Water Pollutants, Chemical/pharmacology
    Chemical Substances Endocrine Disruptors ; Water Pollutants, Chemical
    Language English
    Publishing date 2021-10-20
    Publishing country United States
    Document type Biography ; Historical Article ; Journal Article
    ZDB-ID 1851-x
    ISSN 1095-6840 ; 0016-6480
    ISSN (online) 1095-6840
    ISSN 0016-6480
    DOI 10.1016/j.ygcen.2021.113931
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Effect of Different Initial Fermentation pH on Exopolysaccharides Produced by Pseudoalteromonas agarivorans Hao 2018 and Identification of Key Genes Involved in Exopolysaccharide Synthesis via Transcriptome Analysis

    Ju, Yuhao / Shan, Kai / Liu, Wenlin / Xi, Chenxiang / Zhang, Yiling / Wang, Wei / Wang, Chunlei / Cao, Ruiwen / Zhu, Wenxing / Wang, Haiyong / Zhao, Yanqiu / Hao, Lujiang

    Marine drugs. 2022 Jan. 20, v. 20, no. 2

    2022  

    Abstract: ... monosaccharide composition, and antioxidant activity of the EPSs of Pseudoalteromonas agarivorans Hao 2018 ... In addition, the transcriptome sequence of P. agarivorans Hao 2018 under different initial fermentation pH ...

    Abstract Exopolysaccharides (EPSs) are carbohydrate polymers produced and secreted by microorganisms. In a changing marine environment, EPS secretion can reduce damage from external environmental disturbances to microorganisms. Meanwhile, EPSs have promising application prospects in the fields of food, cosmetics, and pharmaceuticals. Changes in external environmental pH have been shown to affect the synthesis of EPSs in microorganisms. In this study, we analyzed the effects of different initial fermentation pHs on the production, monosaccharide composition, and antioxidant activity of the EPSs of Pseudoalteromonas agarivorans Hao 2018. In addition, the transcriptome sequence of P. agarivorans Hao 2018 under different initial fermentation pH levels was determined. GO and KEGG analyses showed that the differentially expressed genes were concentrated in the two-component regulatory system and bacterial chemotaxis pathways. We further identified the expression of key genes involved in EPS synthesis during pH changes. In particular, the expression of genes encoding the glucose/galactose MFS transporter, phosphomannomutase, and mannose-1-phosphate guanylyltransferase was upregulated when the environmental pH increased, thus promoting EPS synthesis. This study not only contributes to elucidating the environmental adaptation mechanisms of P. agarivorans, but also provides important theoretical guidance for the directed development of new products using biologically active polysaccharides.
    Keywords Pseudoalteromonas ; antioxidant activity ; chemotaxis ; cosmetics ; drugs ; exopolysaccharides ; fermentation ; galactose ; gene expression regulation ; glucose ; marine environment ; pH ; phosphomannomutase ; secretion ; transcriptome ; transcriptomics
    Language English
    Dates of publication 2022-0120
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    ZDB-ID 2175190-0
    ISSN 1660-3397
    ISSN 1660-3397
    DOI 10.3390/md20020089
    Database NAL-Catalogue (AGRICOLA)

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  5. Article ; Online: Effect of Different Initial Fermentation pH on Exopolysaccharides Produced by Pseudoalteromonas agarivorans Hao 2018 and Identification of Key Genes Involved in Exopolysaccharide Synthesis via Transcriptome Analysis

    Yuhao Ju / Kai Shan / Wenlin Liu / Chenxiang Xi / Yiling Zhang / Wei Wang / Chunlei Wang / Ruiwen Cao / Wenxing Zhu / Haiyong Wang / Yanqiu Zhao / Lujiang Hao

    Marine Drugs, Vol 20, Iss 89, p

    2022  Volume 89

    Abstract: ... monosaccharide composition, and antioxidant activity of the EPSs of Pseudoalteromonas agarivorans Hao 2018 ... In addition, the transcriptome sequence of P. agarivorans Hao 2018 under different initial fermentation pH ...

    Abstract Exopolysaccharides (EPSs) are carbohydrate polymers produced and secreted by microorganisms. In a changing marine environment, EPS secretion can reduce damage from external environmental disturbances to microorganisms. Meanwhile, EPSs have promising application prospects in the fields of food, cosmetics, and pharmaceuticals. Changes in external environmental pH have been shown to affect the synthesis of EPSs in microorganisms. In this study, we analyzed the effects of different initial fermentation pHs on the production, monosaccharide composition, and antioxidant activity of the EPSs of Pseudoalteromonas agarivorans Hao 2018. In addition, the transcriptome sequence of P. agarivorans Hao 2018 under different initial fermentation pH levels was determined. GO and KEGG analyses showed that the differentially expressed genes were concentrated in the two-component regulatory system and bacterial chemotaxis pathways. We further identified the expression of key genes involved in EPS synthesis during pH changes. In particular, the expression of genes encoding the glucose/galactose MFS transporter, phosphomannomutase, and mannose-1-phosphate guanylyltransferase was upregulated when the environmental pH increased, thus promoting EPS synthesis. This study not only contributes to elucidating the environmental adaptation mechanisms of P. agarivorans , but also provides important theoretical guidance for the directed development of new products using biologically active polysaccharides.
    Keywords marine bacteria ; structural analysis ; transcriptome sequence ; KEGG analysis ; GO analysis ; Biology (General) ; QH301-705.5
    Language English
    Publishing date 2022-01-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article: The Study of Yin-Chen-Hao-Tang Preventing and Treating Alcoholic Fatty Liver Disease through PPAR Signaling Pathway Based on Network Pharmacology and RNA-Seq Transcriptomics.

    Zhu, Yi-Wei / Li, Du / Ye, Ting-Jie / Qiu, Feng-Jun / Wang, Xiao-Ling / Yan, Xiao-Feng / Lu, Yan-Lin / Xu, Wei / Li, Hua / Hu, Xu-Dong

    Evidence-based complementary and alternative medicine : eCAM

    2021  Volume 2021, Page(s) 8917993

    Abstract: ... course. Yin-Chen-Hao-Tang (YCHT) has a good clinical effect on the treatment of AFLD, but its molecular ...

    Abstract Background: Alcoholic fatty liver disease (AFLD) is the first stage of the alcoholic liver disease course. Yin-Chen-Hao-Tang (YCHT) has a good clinical effect on the treatment of AFLD, but its molecular mechanism has not been elucidated. In this study, we tried to explore the molecular mechanism of YCHT in improving hepatocyte steatosis in AFLD mice through network pharmacology and RNA sequencing (RNA-Seq) transcriptomics.
    Methods: Network pharmacological methods were used to analyze the potential therapeutic signaling pathways and targets of YCHT on AFLD. Then, the AFLD mice model was induced and YCHT was administered concurrently. Liver injury was measured by serum alanine aminotransferase (ALT) activity and liver tissue H&E staining, and liver steatosis was determined by serum triglyceride (TG) level and liver tissue Oil Red staining. The molecular mechanism of YCHT on prevention and treatment of mice AFLD was investigated according to the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis of the differential expression genes data obtained by liver tissue RNA-Seq. Finally, ethanol-induced AFLD AML12 hepatocyte model was established, YCHT with or without PPAR
    Results: The results of network pharmacology analysis showed that YCHT may exert its pharmacological effect on AFLD through 312 potential targets which are involved in many signaling pathways including the PPAR signaling pathway. AFLD mice experiments results showed that YCHT markedly decreased mice serum ALT activity and serum TG levels. YCHT also significantly improved alcohol-induced hepatic injury and steatosis in mice livers. Furthermore, KEGG pathway enrichment results of RNA-Seq showed that the PPAR signaling pathway should be the most relevant pathway of YCHT in the prevention and treatment of AFLD. AFLD hepatocyte model experiment results showed that YCHT could remarkably reduce hepatocyte steatosis through reducing PPAR
    Conclusions: Our study discovered that PPAR
    Language English
    Publishing date 2021-12-31
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2171158-6
    ISSN 1741-4288 ; 1741-427X
    ISSN (online) 1741-4288
    ISSN 1741-427X
    DOI 10.1155/2021/8917993
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Book: Hai jiao qi hao

    Wei, Desheng

    Cape No. 7

    2008  

    Author's details [Regie: Wei Desheng]
    Language Chinese
    Size 2 VCDs, 129 Min.
    Publishing place Hongkong
    Document type Book
    Note Audiosprache: Chinesisch, Kantonesisch ; Untertitel : Chinesisch (Langzeichen), Englisch
    Database Former special subject collection: coastal and deep sea fishing

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  8. Article ; Online: The Study of Yin-Chen-Hao-Tang Preventing and Treating Alcoholic Fatty Liver Disease through PPAR Signaling Pathway Based on Network Pharmacology and RNA-Seq Transcriptomics

    Yi-Wei Zhu / Du Li / Ting-Jie Ye / Feng-Jun Qiu / Xiao-Ling Wang / Xiao-Feng Yan / Yan-Lin Lu / Wei Xu / Hua Li / Xu-Dong Hu

    Evidence-Based Complementary and Alternative Medicine, Vol

    2021  Volume 2021

    Abstract: ... course. Yin-Chen-Hao-Tang (YCHT) has a good clinical effect on the treatment of AFLD, but its molecular ...

    Abstract Background. Alcoholic fatty liver disease (AFLD) is the first stage of the alcoholic liver disease course. Yin-Chen-Hao-Tang (YCHT) has a good clinical effect on the treatment of AFLD, but its molecular mechanism has not been elucidated. In this study, we tried to explore the molecular mechanism of YCHT in improving hepatocyte steatosis in AFLD mice through network pharmacology and RNA sequencing (RNA-Seq) transcriptomics. Methods. Network pharmacological methods were used to analyze the potential therapeutic signaling pathways and targets of YCHT on AFLD. Then, the AFLD mice model was induced and YCHT was administered concurrently. Liver injury was measured by serum alanine aminotransferase (ALT) activity and liver tissue H&E staining, and liver steatosis was determined by serum triglyceride (TG) level and liver tissue Oil Red staining. The molecular mechanism of YCHT on prevention and treatment of mice AFLD was investigated according to the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis of the differential expression genes data obtained by liver tissue RNA-Seq. Finally, ethanol-induced AFLD AML12 hepatocyte model was established, YCHT with or without PPARα agonist pemafibrate or PPARγ inhibitor GW9662 was administered, Nile Red fluorescent staining was used to evaluate steatosis levels in AML12 hepatocytes, and qRT-PCR was used to detect PPARα and PPARγ gene expression. Results. The results of network pharmacology analysis showed that YCHT may exert its pharmacological effect on AFLD through 312 potential targets which are involved in many signaling pathways including the PPAR signaling pathway. AFLD mice experiments results showed that YCHT markedly decreased mice serum ALT activity and serum TG levels. YCHT also significantly improved alcohol-induced hepatic injury and steatosis in mice livers. Furthermore, KEGG pathway enrichment results of RNA-Seq showed that the PPAR signaling pathway should be the most relevant pathway of YCHT in the prevention and treatment of AFLD. AFLD ...
    Keywords Other systems of medicine ; RZ201-999
    Subject code 571
    Language English
    Publishing date 2021-01-01T00:00:00Z
    Publisher Hindawi Limited
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Book ; Audio / Video: Hai jiao qi hao

    Wei, Desheng

    Cape No. 7

    2007  

    Author's details Regie: Wei Desheng
    Language Chinese ; Japanese
    Size 1 DVD (Region 1-8), 130 Min
    Document type Book ; Audio / Video
    Note Audiosprachen: Chinesisch, Japanisch
    Database Former special subject collection: coastal and deep sea fishing

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  10. Article: N2O Emission and Hydroxylamine Oxidase (HAO) Activity in a Nitrogen Removal Process Based on Activated Sludge with Three COD/NH4+ Ratios

    He, Zhi‐xian / Yuan, Lin‐jiang / Wei, Yi‐ni / Nan, Ya‐ping

    Water environment research. 2017 May, v. 89, no. 5

    2017  

    Abstract: This study dealt with nitrous oxide (N₂O) emission and hydroxylamine oxidase (HAO) activity ... at two other C/N ratios (3.5, 6.5). The HAO activity in the anoxic period was higher with all three C/N ... anoxic conditions was affected by the HAO activity and vice versa. When the HAO activity was relatively high, it was ...

    Abstract This study dealt with nitrous oxide (N₂O) emission and hydroxylamine oxidase (HAO) activity of waste sludge in a nitrification and denitrification process employing three carbon nitrogen (C/N) ratios in a sequencing batch reactor (SBR). The experimental results indicated that N₂O emission increased dramatically after the C/N ratio in the sludge increased from 6.5 to 9.3, which was greater than the N₂O emission at two other C/N ratios (3.5, 6.5). The HAO activity in the anoxic period was higher with all three C/N ratios than in the aerobic period. The results suggest that N₂O was produced primarily in the aerobic period and the main source of the N₂O emission resulted from denitrification by nitrifying bacteria and aerobic hydroxylamine oxidation. When a relatively deficient carbon source existed, the N₂O emission under anoxic conditions was affected by the HAO activity and vice versa. When the HAO activity was relatively high, it was found that more N₂O was released.
    Keywords activated sludge ; batch systems ; carbon ; denitrification ; hydroxylamine ; nitrification ; nitrogen ; nitrous oxide ; nitrous oxide production ; oxidation ; oxidoreductases ; research ; water
    Language English
    Dates of publication 2017-05
    Size p. 387-395.
    Publishing place Water Environment Federation
    Document type Article
    Note JOURNAL ARTICLE
    ZDB-ID 1098976-6
    ISSN 1554-7531 ; 1047-7624 ; 1061-4303
    ISSN (online) 1554-7531
    ISSN 1047-7624 ; 1061-4303
    DOI 10.2175/106143017X14839994523668
    Database NAL-Catalogue (AGRICOLA)

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