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  1. Article ; Online: Soil microbial community development across a 32-year coastal wetland restoration time series and the relative importance of environmental factors.

    Abbott, Katherine M / Quirk, Tracy / Fultz, Lisa M

    The Science of the total environment

    2022  Volume 821, Page(s) 153359

    Abstract: Soil microbes play key roles in ecosystem functioning through processes such as organic matter decomposition, nutrient and carbon cycling, and regulating vegetation structure and productivity. Coastal marshes are situated at the confluence of terrestrial ...

    Abstract Soil microbes play key roles in ecosystem functioning through processes such as organic matter decomposition, nutrient and carbon cycling, and regulating vegetation structure and productivity. Coastal marshes are situated at the confluence of terrestrial and marine ecosystems; thus, their soils support abundant and diverse microbiota which facilitate globally important biogeochemical processes including nutrient cycling and greenhouse gas fluxes. With coastal marsh ecosystems threatened by relative sea level rise, subsidence, and development, mitigation for the loss of marshes is becoming commonplace. Despite the widespread implementation of marsh construction projects, little is known about the development and variability of microbial communities in created marshes. For this study, we tested the hypothesis that microbial community composition differs across created marshes of different ages and between created and natural marshes. We also hypothesized that the microbial community would be correlated with soil properties including soil organic carbon and nitrogen content, which were predicted to increase with marsh age. To test these hypotheses, we determined dominant microbial groups and environmental characteristics from six constructed marshes ranging in age from 0 to 32 years old, as well as an adjacent natural marsh. Our results revealed that microbial biomass estimates increased with marsh age except for the high elevation 20-year old marsh, yet each marsh contained a distinct microbial community composition. Across marshes, microbial community composition was significantly related to soil C:N ratio with an increase in total microbial abundance and actinomycetes and GM+ bacteria with an increase in soil C to N ratio. Additionally, shifts in dominant microbial groups were associated with differences in vegetation, elevation, and marsh age. The natural marsh community grouped more closely with younger rather than older marshes suggesting age is less important than environmental conditions. This study shows that microbial communities are not homogenized across restoration sites and do not necessarily converge to be similar to natural marshes over time. Local biotic and environmental conditions were correlated with microbial compositions, yet in seemingly similar conditions, microbial groups also differed. The effect of differences in microbial compositions on ecological functions are yet to be fully understood.
    MeSH term(s) Carbon ; Ecosystem ; Microbiota ; Soil/chemistry ; Time Factors ; Wetlands
    Chemical Substances Soil ; Carbon (7440-44-0)
    Language English
    Publishing date 2022-01-23
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 121506-1
    ISSN 1879-1026 ; 0048-9697
    ISSN (online) 1879-1026
    ISSN 0048-9697
    DOI 10.1016/j.scitotenv.2022.153359
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Soil microbial community development across a 32-year coastal wetland restoration time series and the relative importance of environmental factors

    Abbott, Katherine M. / Quirk, Tracy / Fultz, Lisa M.

    Science of the total environment. 2022 May 15, v. 821

    2022  

    Abstract: Soil microbes play key roles in ecosystem functioning through processes such as organic matter decomposition, nutrient and carbon cycling, and regulating vegetation structure and productivity. Coastal marshes are situated at the confluence of terrestrial ...

    Abstract Soil microbes play key roles in ecosystem functioning through processes such as organic matter decomposition, nutrient and carbon cycling, and regulating vegetation structure and productivity. Coastal marshes are situated at the confluence of terrestrial and marine ecosystems; thus, their soils support abundant and diverse microbiota which facilitate globally important biogeochemical processes including nutrient cycling and greenhouse gas fluxes. With coastal marsh ecosystems threatened by relative sea level rise, subsidence, and development, mitigation for the loss of marshes is becoming commonplace. Despite the widespread implementation of marsh construction projects, little is known about the development and variability of microbial communities in created marshes. For this study, we tested the hypothesis that microbial community composition differs across created marshes of different ages and between created and natural marshes. We also hypothesized that the microbial community would be correlated with soil properties including soil organic carbon and nitrogen content, which were predicted to increase with marsh age. To test these hypotheses, we determined dominant microbial groups and environmental characteristics from six constructed marshes ranging in age from 0 to 32 years old, as well as an adjacent natural marsh. Our results revealed that microbial biomass estimates increased with marsh age except for the high elevation 20-year old marsh, yet each marsh contained a distinct microbial community composition. Across marshes, microbial community composition was significantly related to soil C:N ratio with an increase in total microbial abundance and actinomycetes and GM+ bacteria with an increase in soil C to N ratio. Additionally, shifts in dominant microbial groups were associated with differences in vegetation, elevation, and marsh age. The natural marsh community grouped more closely with younger rather than older marshes suggesting age is less important than environmental conditions. This study shows that microbial communities are not homogenized across restoration sites and do not necessarily converge to be similar to natural marshes over time. Local biotic and environmental conditions were correlated with microbial compositions, yet in seemingly similar conditions, microbial groups also differed. The effect of differences in microbial compositions on ecological functions are yet to be fully understood.
    Keywords altitude ; carbon nitrogen ratio ; community development ; community structure ; greenhouse gases ; marshes ; microbial biomass ; microbial communities ; nitrogen content ; sea level ; soil microorganisms ; soil organic carbon ; subsidence ; time series analysis ; vegetation ; vegetation structure ; wetland restoration
    Language English
    Dates of publication 2022-0515
    Publishing place Elsevier B.V.
    Document type Article
    ZDB-ID 121506-1
    ISSN 1879-1026 ; 0048-9697
    ISSN (online) 1879-1026
    ISSN 0048-9697
    DOI 10.1016/j.scitotenv.2022.153359
    Database NAL-Catalogue (AGRICOLA)

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  3. Article ; Online: A CLOSE-UP guide to capturing clinical images.

    Abbott, Lisa M / Soyer, H Peter

    The Australasian journal of dermatology

    2020  Volume 61, Issue 4, Page(s) 353–354

    Abstract: Telemedicine is rapidly becoming ubiquitous as the medical profession adjusts its practice to provide optimal care to patients in the context of the COVID19 pandemic. The ability to provide accurate dermatological advice via telemedicine is dependent on ... ...

    Abstract Telemedicine is rapidly becoming ubiquitous as the medical profession adjusts its practice to provide optimal care to patients in the context of the COVID19 pandemic. The ability to provide accurate dermatological advice via telemedicine is dependent on the receipt of high-quality clinical images and accurate clinical context, on which clinicians receive little education during medical school and subsequent training. Clinicians can improve their capture, delivery and storage of images using the CLOSE-UP acronym, which encapsulates important considerations in the clinical photography process.
    MeSH term(s) Abbreviations as Topic ; Humans ; Informed Consent ; Photography/methods ; Telemedicine
    Keywords covid19
    Language English
    Publishing date 2020-05-18
    Publishing country Australia
    Document type Journal Article
    ZDB-ID 138052-7
    ISSN 1440-0960 ; 0004-8380
    ISSN (online) 1440-0960
    ISSN 0004-8380
    DOI 10.1111/ajd.13330
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Validity evidence for the Pictorial Scale of Perceived Water Competence short form (PSPWC-4).

    Barnett, Lisa M / Abbott, Gavin / Lander, Natalie / Jidovtseff, Boris / Ridgers, Nicola D

    Journal of sports sciences

    2023  Volume 40, Issue 22, Page(s) 2491–2498

    Abstract: Promoting swimming and water safety is an important public health issue. The Pictorial Scale of Perceived Water Competence (PSPWC) requires children to indicate their perceived competence using three difficulty levels for 17 swimming scenarios. The aim ... ...

    Abstract Promoting swimming and water safety is an important public health issue. The Pictorial Scale of Perceived Water Competence (PSPWC) requires children to indicate their perceived competence using three difficulty levels for 17 swimming scenarios. The aim was to purposefully select four critical scenarios of the PSPWC to create the PSPWC-short form and test for associations with actual swim competence. Four of 17 scenarios were selected and extended to a four-point response scale by adding an extra difficulty level. Parents whose children had participated in at least 1-week swim-intensive programme in 2021 were invited to participate in the study, and perceptions of 139 children (mean age 6.9 years, SD = 1.9) were matched with certificate data of actual swim competence pre- (n = 139) and post-programme (n = 29). Moderate positive correlations were found between swim level at programme start and perception of: retrieving an object in deep water (
    MeSH term(s) Child ; Humans ; Motor Skills/physiology ; Water ; Swimming/physiology ; Parents
    Chemical Substances Water (059QF0KO0R)
    Language English
    Publishing date 2023-01-23
    Publishing country England
    Document type Journal Article
    ZDB-ID 995528-8
    ISSN 1466-447X ; 0264-0414
    ISSN (online) 1466-447X
    ISSN 0264-0414
    DOI 10.1080/02640414.2023.2165008
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Rhabdomyosarcoma as the first presentation in Neurofibromatosis Type 1: case series and review of the literature.

    Castle, Alison M R / Empringham, Brianna / Pinto, Lisa M / Villani, Anita / Kanwar, Nisha / Abbott, Lesleigh S / Sawyer, Sarah L

    Pediatric hematology and oncology

    2023  Volume 40, Issue 5, Page(s) 506–515

    Abstract: Neurofibromatosis Type 1 (NF1) is a neurocutaneous syndrome characterized by multiple café-au-lait macules, neurofibromas, and predisposition to malignancies, including rhabdomyosarcomas (RMS). ... ...

    Abstract Neurofibromatosis Type 1 (NF1) is a neurocutaneous syndrome characterized by multiple café-au-lait macules, neurofibromas, and predisposition to malignancies, including rhabdomyosarcomas (RMS). Somatic
    MeSH term(s) Child ; Humans ; Neurofibromatosis 1/complications ; Neurofibromatosis 1/diagnosis ; Neurofibromatosis 1/genetics ; Cafe-au-Lait Spots/diagnosis ; Cafe-au-Lait Spots/genetics ; Cafe-au-Lait Spots/pathology ; Rhabdomyosarcoma/genetics ; Germ-Line Mutation
    Language English
    Publishing date 2023-01-10
    Publishing country England
    Document type Review ; Journal Article
    ZDB-ID 632914-7
    ISSN 1521-0669 ; 0888-0018
    ISSN (online) 1521-0669
    ISSN 0888-0018
    DOI 10.1080/08880018.2022.2153951
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Smartphone apps for skin cancer diagnosis: Implications for patients and practitioners.

    Abbott, Lisa M / Smith, Saxon D

    The Australasian journal of dermatology

    2018  Volume 59, Issue 3, Page(s) 168–170

    Abstract: A research team at Stanford recently reported that their deep convolutional neural network had learned to classify skin cancer with a level of competence equivalent to that of board-certified dermatologists. It is possible that in time, and using larger ... ...

    Abstract A research team at Stanford recently reported that their deep convolutional neural network had learned to classify skin cancer with a level of competence equivalent to that of board-certified dermatologists. It is possible that in time, and using larger datasets, such software may surpass the average doctor in diagnostic ability, and that highly accurate technology may be available to both clinicians and patients via smartphones. This technology is poised to change the landscape of skin cancer diagnosis for both physicians and patients, but whether such changes are beneficial will depend on how they are regulated and implemented.
    MeSH term(s) Dermatology/legislation & jurisprudence ; Dermatology/methods ; Diagnostic Self Evaluation ; Humans ; Image Interpretation, Computer-Assisted ; Liability, Legal ; Mobile Applications/legislation & jurisprudence ; Physician's Role ; Skin Neoplasms/diagnostic imaging ; Smartphone
    Language English
    Publishing date 2018-01-02
    Publishing country Australia
    Document type Journal Article
    ZDB-ID 138052-7
    ISSN 1440-0960 ; 0004-8380
    ISSN (online) 1440-0960
    ISSN 0004-8380
    DOI 10.1111/ajd.12758
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: A CLOSE-UP guide to capturing clinical images

    Abbott, Lisa M / Soyer, H Peter

    Australas. j. dermatol

    Abstract: Telemedicine is rapidly becoming ubiquitous as the medical profession adjusts its practice to provide optimal care to patients in the context of the COVID19 pandemic. The ability to provide accurate dermatological advice via telemedicine is dependent on ... ...

    Abstract Telemedicine is rapidly becoming ubiquitous as the medical profession adjusts its practice to provide optimal care to patients in the context of the COVID19 pandemic. The ability to provide accurate dermatological advice via telemedicine is dependent on the receipt of high-quality clinical images and accurate clinical context, on which clinicians receive little education during medical school and subsequent training. Clinicians can improve their capture, delivery and storage of images using the CLOSE-UP acronym, which encapsulates important considerations in the clinical photography process.
    Keywords covid19
    Publisher WHO
    Document type Article
    Note WHO #Covidence: #819983
    Database COVID19

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  8. Article ; Online: A CLOSE‐UP guide to capturing clinical images

    Abbott, Lisa M. / Soyer, H. Peter

    2020  

    Abstract: Telemedicine is rapidly becoming ubiquitous as the medical profession adjusts its practice to provide optimal care to patients in the context of the COVID19 pandemic. The ability to provide accurate dermatological advice via telemedicine is dependent on ... ...

    Abstract Telemedicine is rapidly becoming ubiquitous as the medical profession adjusts its practice to provide optimal care to patients in the context of the COVID19 pandemic. The ability to provide accurate dermatological advice via telemedicine is dependent on the receipt of high-quality clinical images and accurate clinical context, on which clinicians receive little education during medical school and subsequent training. Clinicians can improve their capture, delivery and storage of images using the CLOSE-UP acronym, which encapsulates important considerations in the clinical photography process.
    Keywords Dermatology ; 2708 Dermatology ; covid19
    Language English
    Publishing date 2020-05-18
    Publisher Wiley-Blackwell Publishing Asia
    Publishing country au
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article ; Online: Cost evaluation of integrating local HIV and housing data to facilitate service coordination in four demonstration sites.

    Abbott, Michele M / McBain, Ryan / Wagner, Lisa / Liu, Harry H

    AIDS care

    2021  Volume 34, Issue 6, Page(s) 746–752

    Abstract: As part of the evaluation of a federal initiative to integrate HIV medical and housing data at four local jurisdictions in the U.S., we estimated the financial costs of implementing data integration occurring from June 2016 to August 2018. We collected ... ...

    Abstract As part of the evaluation of a federal initiative to integrate HIV medical and housing data at four local jurisdictions in the U.S., we estimated the financial costs of implementing data integration occurring from June 2016 to August 2018. We collected data on labor, non-labor, and overhead expenses based on invoices and surveys of staff time, staff compensation, and non-labor expenses. Non-labor expenses were directly charged or allocated to the project using the number of full-time equivalents as the allocation basis. Reported indirect cost rates were used to estimate overhead expenses. Demonstration sites spent an average of $273,656 over the full 27-month period, with an average monthly spending of $10,010 in 2018 U.S. dollars. There was sizable variation in the data integration costs across sites, implementation phases, and data integration models. Findings may help policymakers and potential adopters of similar data integration efforts customize parameters for local conditions and estimate resources required.
    MeSH term(s) Costs and Cost Analysis ; HIV Infections ; Housing ; Humans ; Surveys and Questionnaires
    Language English
    Publishing date 2021-03-03
    Publishing country England
    Document type Journal Article ; Research Support, U.S. Gov't, P.H.S.
    ZDB-ID 1012651-x
    ISSN 1360-0451 ; 0954-0121
    ISSN (online) 1360-0451
    ISSN 0954-0121
    DOI 10.1080/09540121.2021.1894317
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: The Reply.

    Shapiro, Daniel E / Duquette, Cathy / Abbott, Lisa M / Babineau, Timothy / Pearl, Amanda / Haidet, Paul

    The American journal of medicine

    2020  Volume 133, Issue 9, Page(s) e534

    MeSH term(s) Humans ; Physicians
    Language English
    Publishing date 2020-08-31
    Publishing country United States
    Document type Letter ; Comment
    ZDB-ID 80015-6
    ISSN 1555-7162 ; 1873-2178 ; 0002-9343 ; 1548-2766
    ISSN (online) 1555-7162 ; 1873-2178
    ISSN 0002-9343 ; 1548-2766
    DOI 10.1016/j.amjmed.2020.04.014
    Database MEDical Literature Analysis and Retrieval System OnLINE

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