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  1. Article ; Online: A Framework for a Statistical Characterization of Epidemic Cycles: COVID-19 Case Study.

    De Carvalho, Eduardo Atem / De Carvalho, Rogerio Atem

    JMIRx med

    2021  Volume 2, Issue 1, Page(s) e22617

    Abstract: Background: Since the beginning of the COVID-19 pandemic, researchers and health authorities have sought to identify the different parameters that drive its local transmission cycles to make better decisions regarding prevention and control measures. ... ...

    Abstract Background: Since the beginning of the COVID-19 pandemic, researchers and health authorities have sought to identify the different parameters that drive its local transmission cycles to make better decisions regarding prevention and control measures. Different modeling approaches have been proposed in an attempt to predict the behavior of these local cycles.
    Objective: This paper presents a framework to characterize the different variables that drive the local, or epidemic, cycles of the COVID-19 pandemic, in order to provide a set of relatively simple, yet efficient, statistical tools to be used by local health authorities to support decision making.
    Methods: Virtually closed cycles were compared to cycles in progress from different locations that present similar patterns in the figures that describe them. With the aim to compare populations of different sizes at different periods of time and locations, the cycles were normalized, allowing an analysis based on the core behavior of the numerical series. A model for the reproduction number was derived from the experimental data, and its performance was presented, including the effect of subnotification (ie, underreporting). A variation of the logistic model was used together with an innovative inventory model to calculate the actual number of infected persons, analyze the incubation period, and determine the actual onset of local epidemic cycles.
    Results: The similarities among cycles were demonstrated. A pattern between the cycles studied, which took on a triangular shape, was identified and used to make predictions about the duration of future cycles. Analyses on effective reproduction number (R
    Conclusions: It was demonstrated that, with relatively simple mathematical tools, it is possible to obtain a reliable understanding of the behavior of COVID-19 local epidemic cycles, by introducing an integrated framework for identifying cycle patterns and calculating the variables that drive it, namely: the R
    Language English
    Publishing date 2021-03-18
    Publishing country Canada
    Document type Journal Article
    ISSN 2563-6316
    ISSN (online) 2563-6316
    DOI 10.2196/22617
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Identification of Patterns in Epidemic Cycles and Methods for Estimating Their Duration: COVID-19 Case Study

    De Carvalho, Eduardo Atem / De Carvalho, Rogerio Atem

    medRxiv

    Abstract: ... of the city of Rio de Janeiro, Brazil, is presented in more detail. ...

    Abstract This paper presents several epidemic cycles of COVID-19 that have practically ended in countries, states and cities and normalize them through simple and well-known numerical methods. It is evident that there is a practically universal pattern between them, in a triangular shape. It is also possible to find similar cycles with very close scales and thus use cases with cycles already closed to predict the end of the cycles still in progress. Three methods are presented and discussed and the case of the city of Rio de Janeiro, Brazil, is presented in more detail.
    Keywords covid19
    Language English
    Publishing date 2020-07-15
    Publisher Cold Spring Harbor Laboratory Press
    Document type Article ; Online
    DOI 10.1101/2020.07.13.20153080
    Database COVID19

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  3. Article ; Online: COVID-19: Time-Dependent Effective Reproduction Number and Sub-notification Effect Estimation Modeling

    De Carvalho, Eduardo Atem / De Carvalho, Rogerio Atem

    medRxiv

    Abstract: Background: Since the beginning of the COVID-19 pandemic, researchers and health authorities have sought to identify the different parameters that govern their infection and death cycles, in order to be able to make better decisions. In particular, a ... ...

    Abstract Background: Since the beginning of the COVID-19 pandemic, researchers and health authorities have sought to identify the different parameters that govern their infection and death cycles, in order to be able to make better decisions. In particular, a series of reproduction number estimation models have been presented, with different practical results. Objective: This article aims to present an effective and efficient model for estimating the Reproduction Number and to discuss the impacts of sub-notification on these calculations. Methods: The concept of Moving Average Method with Initial value (MAMI) is used, as well as a model for Rt, the Reproduction Number, is derived from experimental data. The models are applied to real data and their performance is presented. Results: Analyses on Rt and sub-notification effects for Germany, Italy, Sweden, United Kingdom, South Korea, and the State of New York are presented to show the performance of the methods here introduced. Conclusions: We show that, with relatively simple mathematical tools, it is possible to obtain reliable values for time-dependent Reproduction Numbers (Rt), as well as we demonstrate that the impact of sub-notification is relatively low, after the initial phase of the epidemic cycle has passed.
    Keywords covid19
    Language English
    Publishing date 2020-07-30
    Publisher Cold Spring Harbor Laboratory Press
    Document type Article ; Online
    DOI 10.1101/2020.07.28.20164087
    Database COVID19

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  4. Article ; Online: COVID-19: Estimation of the Actual Onset of Local Epidemic Cycles, Determination of Total Number of Infective, and Duration of the Incubation Period

    De Carvalho, Rogerio Atem / De Carvalho, Eduardo Atem

    medRxiv

    Abstract: Background: Most studies of the epidemic cycles of the pandemic of Sars-CoV-2, or COVID-19 as it became known, define the beginning of specific cycles in countries from the laboratory identification of the first cases of infection, however, there is the ... ...

    Abstract Background: Most studies of the epidemic cycles of the pandemic of Sars-CoV-2, or COVID-19 as it became known, define the beginning of specific cycles in countries from the laboratory identification of the first cases of infection, however, there is the awareness that cycles may have started earlier, without proper identification. This influences all the parameters that govern the statistical models used for controlling the infection. Purpose: This work proposes two models based on experimental data. The Logistic Model it is used to obtain three parameters of the epidemic cycle of COVID-19, namely: the final count for the total infected, the daily infection rate and the lag time. Complimentary, a novel inventory model is proposed to calculate the number of infective persons, as well as to determine the incubation period. Methods: The data on epidemic cycles of Germany, Italy, and Sweden are treated previously by the Moving Average Method with Initial value (MAMI), then a variation of the Logistic Model, obtained through curve-fitting, is used to obtain the three parameters. The inventory model is introduced to calculate the actual number of infected persons and the behavior of the incubation period is analyzed. Results: After comparing data from the three countries it is possible to determine the actual probable dates of the beginning of the epidemic cycles for each one, determine the size of the incubation period, as well as to determine the total number of infective persons during the cycle. Conclusions: The actual probable dates of the beginning of the epidemic cycles in the countries analyzed are determined, the total number of infected is determined, and it is statistically proven that the incubation cycle for Sars-CoV-2 is five days.
    Keywords covid19
    Language English
    Publishing date 2020-08-25
    Publisher Cold Spring Harbor Laboratory Press
    Document type Article ; Online
    DOI 10.1101/2020.08.23.20180356
    Database COVID19

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  5. Article ; Online: Homenagem à Theresa Atem de Carvalho

    Eduardo Atem de Carvalho / Rogério Atem de Carvalho

    Vértices, Vol 5, Iss

    2010  Volume 3

    Abstract: ...

    Abstract .
    Keywords Science (General) ; Q1-390 ; Social sciences (General) ; H1-99
    Language English
    Publishing date 2010-05-01T00:00:00Z
    Publisher Essentia Editora IFFluminense
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article ; Online: Contamination of equipment and surfaces in the operating room anesthesia workspace: a cross-sectional study.

    Macedo, Carlos Eduardo / Ferreira, Adriano Menis / Barcelos, Larissa da Silva / Alvim, André Luiz Silva / Carneiro, Liliane Moretti / Martins, Sandro Rogério / Andrade, Denise de / Rigotti, Marcelo Alessandro / Gasques, Ruberval Peres / Silva Junior, Vanderlei Amaro da / Oliveira, Layze Braz de / Carvalho, Herica Emilia Félix de / Sousa, Alvaro Francisco Lopes de

    Sao Paulo medical journal = Revista paulista de medicina

    2024  Volume 142, Issue 4, Page(s) e2023177

    Abstract: Background: Contamination of the breathing circuit and medication preparation surface ... samples were collected from the breathing circuits. After repeating the samples in different culture media ...

    Abstract Background: Contamination of the breathing circuit and medication preparation surface of an anesthesia machine can increase the risk of cross-infection.
    Objective: To evaluate the contamination of the anesthetic medication preparation surface, respiratory circuits, and devices used in general anesthesia with assisted mechanical ventilation.
    Design and setting: Cross-sectional, quantitative study conducted at the surgical center of a philanthropic hospital, of medium complexity located in the municipality of Três Lagoas, in the eastern region of the State of Mato Grosso do Sul.
    Methods: Eighty-two microbiological samples were collected from the breathing circuits. After repeating the samples in different culture media, 328 analyses were performed.
    Results: A higher occurrence of E. coli, Enterobacter spp., Pseudomonas spp., Staphylococcus aureus, and Streptococcus pneumoniae (P < 0.001) were observed. Variations were observed depending on the culture medium and sample collection site.
    Conclusion: The study findings underscore the inadequate disinfection of the inspiratory and expiratory branches, highlighting the importance of stringent cleaning and disinfection of high-touch surfaces.
    MeSH term(s) Humans ; Cross-Sectional Studies ; Operating Rooms ; Escherichia coli ; Anesthesia ; Anesthesiology
    Language English
    Publishing date 2024-02-23
    Publishing country Brazil
    Document type Journal Article
    ZDB-ID 1203171-9
    ISSN 1806-9460 ; 1516-3180 ; 0035-0362
    ISSN (online) 1806-9460
    ISSN 1516-3180 ; 0035-0362
    DOI 10.1590/1516-3180.2023.0177.R1.291123
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Chlorantraniliprole-mediated effects on survival, walking abilities, and respiration in the coffee berry borer, Hypothenemus hampei.

    Plata-Rueda, Angelica / Martínez, Luis Carlos / Costa, Nayara Cecília Rodrigues / Zanuncio, José Cola / de Sena Fernandes, Maria Elisa / Serrão, José Eduardo / Guedes, Raul Narciso Carvalho / Fernandes, Flávio Lemes

    Ecotoxicology and environmental safety

    2019  Volume 172, Page(s) 53–58

    Abstract: Hypothenemus hampei Ferrari (Coleoptera: Curculionidae) is the main pest of coffee crops, and effective methods for pest management are needed urgently. Bioassays were conducted to assess the effects of the insecticide chlorantraniliprole on H. hampei ... ...

    Abstract Hypothenemus hampei Ferrari (Coleoptera: Curculionidae) is the main pest of coffee crops, and effective methods for pest management are needed urgently. Bioassays were conducted to assess the effects of the insecticide chlorantraniliprole on H. hampei adults. Toxicity, survivorship, larval production, respiration rate, and behavioral responses to six concentrations of chlorantraniliprole were evaluated. Chlorantraniliprole was toxic to H. hampei (LD
    MeSH term(s) Animals ; Coffea ; Coleoptera/drug effects ; Coleoptera/physiology ; Fruit ; Insecticides ; Larva/drug effects ; Larva/physiology ; Pest Control, Biological/methods ; Toxicity Tests ; ortho-Aminobenzoates
    Chemical Substances Insecticides ; ortho-Aminobenzoates ; chlorantranilipole (622AK9DH9G)
    Language English
    Publishing date 2019-01-22
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 436536-7
    ISSN 1090-2414 ; 0147-6513
    ISSN (online) 1090-2414
    ISSN 0147-6513
    DOI 10.1016/j.ecoenv.2019.01.063
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Mitochondrial Respiratory Inhibition Promoted by Pyraclostrobin in Fungi is Also Observed in Honey Bees.

    Nicodemo, Daniel / Mingatto, Fábio Erminio / De Jong, David / Bizerra, Paulo Francisco Veiga / Tavares, Marco Aurélio / Bellini, William Cesar / Vicente, Eduardo Festozo / de Carvalho, Amanda

    Environmental toxicology and chemistry

    2020  Volume 39, Issue 6, Page(s) 1267–1272

    Abstract: ... 50 nM rotenone (complex I inhibitor), and mitochondrial respiration was measured at 30 °C using ... Pyraclostrobin inhibited mitochondrial respiration in a dose-dependent manner at concentrations of 10 μM and ...

    Abstract There is no use restriction associated with bees for many fungicides used in agriculture; however, this does not always mean that these pesticides are harmless for these nontarget organisms. We investigated whether the fungicide pyraclostrobin, which acts on fungal mitochondria, also negatively affects honey bee mitochondrial bioenergetics. Honey bees were collected from 5 hives and anesthetized at 4 °C. The thoraces were separated, and mitochondria were isolated by grinding, filtering, and differential centrifugation. An aliquot of 0.5 mg of mitochondrial proteins was added to 0.5 mL of a standard reaction medium with 4 mM succinate (complex II substrate) plus 50 nM rotenone (complex I inhibitor), and mitochondrial respiration was measured at 30 °C using a Clark-type oxygen electrode. Mitochondrial membrane potential was determined spectrofluorimetrically using safranin O as a probe, and adenosine triphosphate (ATP) synthesis was determined by chemiluminescence. Pyraclostrobin at 0 to 50 μM was tested on the mitochondrial preparations, with 3 repetitions. Pyraclostrobin inhibited mitochondrial respiration in a dose-dependent manner at concentrations of 10 μM and above, demonstrating typical inhibition of oxidative phosphorylation. Pyraclostrobin also promoted a decline in the mitochondrial membrane potential at doses of 5 μM and above and in ATP synthesis at 15 μM and above. We conclude that pyraclostrobin interferes with honey bee mitochondrial function, which is especially critical for the energy-demanding flight activity of foraging bees. Environ Toxicol Chem 2020;39:1267-1272. © 2020 SETAC.
    MeSH term(s) Adenosine Triphosphate/metabolism ; Animals ; Bees/drug effects ; Energy Metabolism/drug effects ; Fungi/drug effects ; Fungi/metabolism ; Fungicides, Industrial/metabolism ; Fungicides, Industrial/toxicity ; Inactivation, Metabolic/drug effects ; Membrane Potential, Mitochondrial ; Mitochondria/drug effects ; Mitochondria/metabolism ; Strobilurins/metabolism ; Strobilurins/toxicity
    Chemical Substances Fungicides, Industrial ; Strobilurins ; Adenosine Triphosphate (8L70Q75FXE) ; pyrachlostrobin (DJW8M9OX1H)
    Language English
    Publishing date 2020-04-13
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 46234-2
    ISSN 1552-8618 ; 0730-7268
    ISSN (online) 1552-8618
    ISSN 0730-7268
    DOI 10.1002/etc.4719
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: Does grass-legume intercropping change soil quality and grain yield in integrated crop-livestock systems?

    Silva, Laércio Santos / Laroca, Jackeline Vieira dos Santos / Coelho, Anderson Prates / Gonçalves, Evelyn Custódio / Gomes, Romário Pimenta / Pacheco, Leandro Pereira / Carvalho, Paulo César de Faccio / Pires, Gabriela Castro / Oliveira, Rafael Loverde / Souza, Juliana Mendes Andrade de / Freitas, Caio Moretti / Cabral, Carlos Eduardo Avelino / Wruck, Flávio Jesus / Souza, Edicarlos Damacena de

    Applied soil ecology. 2022 Feb., v. 170

    2022  

    Abstract: ... TOC), carbon management index (CMI%), microbial biomass carbon (MBC), soil basal respiration (BR), and ...

    Institution Research Group GPISI - Research and Innovation Group on Pure and Crop Livestock Systems
    Abstract In sustainable tropical agriculture, grass-legume intercropping can increase productivity, enhance the nutritional quality of the crop and affect soil microbiological activity, leading to higher yields in succession crops. This study evaluated the impact of grass-legume intercropping, during the pasture phase of integrated crop-livestock systems under no-tillage (ICLS–NT), on soil microbiota, pasture quality, and soybean productivity in the Brazilian Cerrado. We evaluated the effect of intercropping on total soil contents of organic carbon and nitrogen, soil microbial activity, animal and soybean productivity (2017 and 2018 crop seasons), and pasture production and quality. The experiment consisted of twelve treatments under grass-legume intercropping in the pasture phase of ICLS–NT. The grasses Urochloa ruziziensis ‘Kennedy’, U. brizantha ‘Paiaguás’, Panicum maximum ‘Tamani’ and U. brizantha ‘Piatã’ were grown in monoculture and intercropped with cowpea (Vigna unguiculata) ‘Tumucumaque’ or pigeon pea (Cajanus cajan) ‘Mandarin’. A randomized block design, with three repetitions, was used in a split-plot arrangement, considering the grasses as plots and the legumes as subplots. The results showed that ICLS–NT improved the activity of soil microbial biomass when compared to monoculture systems. Grass-legume intercropping during the pasture phase, mainly with cowpea (Vigna unguiculata), increased soybean productivity, and grass dry matter. Total organic carbon (TOC), carbon management index (CMI%), microbial biomass carbon (MBC), soil basal respiration (BR), and metabolic quotient (Qmic) are the most sensitive markers when it comes to the effects of intercropping on soil microbiological activity and soybean productivity in ICLS–NT. Identifying the best grass-legume combinations allows the establishment of more productive crop-livestock integration systems under no-tillage better adapted to the bio-edaphoclimatic conditions of the Brazilian Cerrado.
    Keywords Cajanus cajan ; Megathyrsus maximus ; Urochloa ruziziensis ; Vigna unguiculata ; animals ; cerrado ; cowpeas ; grain yield ; microbial activity ; microbial biomass ; microbial carbon ; nitrogen ; no-tillage ; nutritive value ; pastures ; pigeon peas ; soil ; soil ecology ; soil microorganisms ; soil quality ; soil respiration ; soybeans ; total organic carbon ; tropical agriculture
    Language English
    Dates of publication 2022-02
    Publishing place Elsevier B.V.
    Document type Article
    ZDB-ID 1196758-4
    ISSN 0929-1393
    ISSN 0929-1393
    DOI 10.1016/j.apsoil.2021.104257
    Database NAL-Catalogue (AGRICOLA)

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  10. Article: Taurine supplementation associated with exercise increases mitochondrial activity and fatty acid oxidation gene expression in the subcutaneous white adipose tissue of obese women

    De Carvalho, Flavia Giolo / Brandao, Camila Fernanda Cunha / Batitucci, Gabriela / Souza, Anderson de Oliveira / Ferrari, Gustavo Duarte / Alberici, Luciane Carla / Muñoz, Vitor Rosetto / Pauli, José Rodrigo / De Moura, Leandro Pereira / Ropelle, Eduardo Rochete / da Silva, Adelino Sanchez Ramos / Junqueira-Franco, Marcia Varella Morandi / Marchini, Julio Sergio / de Freitas, Ellen Cristini

    Clinical nutrition. 2020 Sept. 26,

    2020  

    Abstract: ... scWAT biopsy for mitochondrial respiration, and gene expression related to mitochondrial activity and ...

    Abstract To evaluate the effects of taurine supplementation associated or not with chronic exercise on body composition, mitochondrial function, and expression of genes related to mitochondrial activity and lipid oxidation in the subcutaneous white adipose tissue (scWAT) of obese women.A randomized and double-blind trial was developed with 24 obese women (BMI 33.1 ± 2.9 kg/m², 32.9 ± 6.3 y) randomized into three groups: Taurine supplementation group (Tau, n = 8); Exercise group (Ex, n = 8); Taurine supplementation + exercise group (TauEx, n = 8). The intervention was composed of 3 g of taurine or placebo supplementation and exercise training for eight weeks. Anthropometry, body fat composition, indirect calorimetry, scWAT biopsy for mitochondrial respiration, and gene expression related to mitochondrial activity and lipid oxidation were assessed before and after the intervention.No changes were observed for the anthropometric characteristics. The Ex group presented an increased resting energy expenditure rate, and the TauEx and Ex groups presented increased lipid oxidation and a decreased respiratory quotient. Both trained groups (TauEx and Ex) demonstrated improved scWAT mitochondrial respiratory capacity. Regarding mitochondrial markers, no changes were observed for the Tau group. The TauEx group had higher expression of CIDEA, PGC1a, PRDM16, UCP1, and UCP2. The genes related to fat oxidation (ACO2 and ACOX1) were increased in the Tau and Ex groups, while only the TauEx group presented increased expression of CPT1, PPARa, PPARγ, LPL, ACO1, ACO2, HSL, ACOX1, and CD36 genes.Taurine supplementation associated with exercise improved lipid metabolism through the modulation of genes related to mitochondrial activity and fatty acid oxidation, suggesting a browning effect in the scWAT of obese women.
    Keywords anthropometric measurements ; beta oxidation ; biopsy ; body composition ; calorimetry ; clinical nutrition ; exercise ; gene expression ; genes ; lipid peroxidation ; mitochondria ; peroxisome proliferator-activated receptor alpha ; placebos ; respiratory quotient ; resting energy expenditure ; taurine ; white adipose tissue ; women
    Language English
    Dates of publication 2020-0926
    Publishing place Elsevier Ltd
    Document type Article
    Note NAL-light ; Pre-press version
    ZDB-ID 604812-2
    ISSN 1532-1983 ; 0261-5614
    ISSN (online) 1532-1983
    ISSN 0261-5614
    DOI 10.1016/j.clnu.2020.09.044
    Database NAL-Catalogue (AGRICOLA)

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