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Article ; Online: Description of the female of Copestylum tigrinum Ricarte amp; Hancock in Ricarte et al., 2015 (Diptera, Syrphidae), first record in mainland South America and new larval host plant.

Miranda, Gil F G / Soares, Matheus M M / Fernandes, Daniell R R / Rafael, Jos A

Zootaxa

2022 Volume 5182, Issue 2, Page(s) 175–182

Abstract: Larvae of Copestylum tigrinum Ricarte Hancock in Ricarte et al. 2015 were reared from fallen fruits of Casearia combaymensis Tul. (Salicaceae) collected in the Brazilian Amazon (Amazonas, Brazil). This is the first record of this species in mainland ... ...

Abstract	Larvae of Copestylum tigrinum Ricarte Hancock in Ricarte et al. 2015 were reared from fallen fruits of Casearia combaymensis Tul. (Salicaceae) collected in the Brazilian Amazon (Amazonas, Brazil). This is the first record of this species in mainland South America and Brazil, and the first record of a fruit of Salicaceae as a food substrate for the larvae of C. tigrinum. The female and its genitalia are described for the first time, the puparium is redescribed and some aspects of the biology of Copestylum are discussed.
MeSH term(s)	Animals ; Diptera ; Fruit ; Genitalia ; Larva
Language	English
Publishing date	2022-09-05
Publishing country	New Zealand
Document type	Journal Article
ISSN	1175-5334
ISSN (online)	1175-5334
DOI	10.11646/zootaxa.5182.2.4
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Article ; Online: Repeated exposure of wheat to the fungal root pathogen Bipolaris sorokiniana modulates rhizosphere microbiome assembly and disease suppressiveness.

Costa, Lilian S Abreu Soares / de Faria, Mírian Rabelo / Chiaramonte, Josiane Barros / Mendes, Lucas W / Sepo, Edis / de Hollander, Mattias / Fernandes, José Maurício Cunha / Carrión, Víctor J / Bettiol, Wagner / Mauchline, Tim H / Raaijmakers, Jos M / Mendes, Rodrigo

Environmental microbiome

2023 Volume 18, Issue 1, Page(s) 85

Abstract: Background: Disease suppressiveness of soils to fungal root pathogens is typically induced in the field by repeated infections of the host plant and concomitant changes in the taxonomic composition and functional traits of the rhizosphere microbiome. ... ...

Abstract	Background: Disease suppressiveness of soils to fungal root pathogens is typically induced in the field by repeated infections of the host plant and concomitant changes in the taxonomic composition and functional traits of the rhizosphere microbiome. Here, we studied this remarkable phenomenon for Bipolaris sorokiniana in two wheat cultivars differing in resistance to this fungal root pathogen. Results: The results showed that repeated exposure of the susceptible wheat cultivar to the pathogen led to a significant reduction in disease severity after five successive growth cycles. Surprisingly, the resistant wheat cultivar, initially included as a control, showed the opposite pattern with an increase in disease severity after repeated pathogen exposure. Amplicon analyses revealed that the bacterial families Chitinophagaceae, Anaerolineaceae and Nitrosomonadaceae were associated with disease suppressiveness in the susceptible wheat cultivar; disease suppressiveness in the resistant wheat cultivar was also associated with Chitinophagaceae and a higher abundance of Comamonadaceae. Metagenome analysis led to the selection of 604 Biosynthetic Gene Clusters (BGCs), out of a total of 2,571 identified by AntiSMASH analysis, that were overrepresented when the soil entered the disease suppressive state. These BGCs are involved in the biosynthesis of terpenes, non-ribosomal peptides, polyketides, aryl polyenes and post-translationally modified peptides. Conclusion: Combining taxonomic and functional profiling we identified key changes in the rhizosphere microbiome during disease suppression. This illustrates how the host plant relies on the rhizosphere microbiome as the first line of defense to fight soil-borne pathogens. Microbial taxa and functions identified here can be used in novel strategies to control soil-borne fungal pathogens.
Language	English
Publishing date	2023-12-05
Publishing country	England
Document type	Journal Article
ISSN	2524-6372
ISSN (online)	2524-6372
DOI	10.1186/s40793-023-00529-2
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Article ; Online: Repeated exposure of wheat to the fungal root pathogen Bipolaris sorokiniana modulates rhizosphere microbiome assembly and disease suppressiveness

Lilian S. Abreu Soares Costa / Mírian Rabelo de Faria / Josiane Barros Chiaramonte / Lucas W. Mendes / Edis Sepo / Mattias de Hollander / José Maurício Cunha Fernandes / Víctor J. Carrión / Wagner Bettiol / Tim H. Mauchline / Jos M. Raaijmakers / Rodrigo Mendes

Environmental Microbiome, Vol 18, Iss 1, Pp 1-

2023 Volume 15

Abstract: Abstract Background Disease suppressiveness of soils to fungal root pathogens is typically induced in the field by repeated infections of the host plant and concomitant changes in the taxonomic composition and functional traits of the rhizosphere ... ...

Abstract	Abstract Background Disease suppressiveness of soils to fungal root pathogens is typically induced in the field by repeated infections of the host plant and concomitant changes in the taxonomic composition and functional traits of the rhizosphere microbiome. Here, we studied this remarkable phenomenon for Bipolaris sorokiniana in two wheat cultivars differing in resistance to this fungal root pathogen. Results The results showed that repeated exposure of the susceptible wheat cultivar to the pathogen led to a significant reduction in disease severity after five successive growth cycles. Surprisingly, the resistant wheat cultivar, initially included as a control, showed the opposite pattern with an increase in disease severity after repeated pathogen exposure. Amplicon analyses revealed that the bacterial families Chitinophagaceae, Anaerolineaceae and Nitrosomonadaceae were associated with disease suppressiveness in the susceptible wheat cultivar; disease suppressiveness in the resistant wheat cultivar was also associated with Chitinophagaceae and a higher abundance of Comamonadaceae. Metagenome analysis led to the selection of 604 Biosynthetic Gene Clusters (BGCs), out of a total of 2,571 identified by AntiSMASH analysis, that were overrepresented when the soil entered the disease suppressive state. These BGCs are involved in the biosynthesis of terpenes, non-ribosomal peptides, polyketides, aryl polyenes and post-translationally modified peptides. Conclusion Combining taxonomic and functional profiling we identified key changes in the rhizosphere microbiome during disease suppression. This illustrates how the host plant relies on the rhizosphere microbiome as the first line of defense to fight soil-borne pathogens. Microbial taxa and functions identified here can be used in novel strategies to control soil-borne fungal pathogens.
Keywords	Soilborne pathogens ; Plant disease suppression ; Soil microbiome ; Bacterial communities ; Fungal communities ; Environmental sciences ; GE1-350 ; Microbiology ; QR1-502
Subject code	630
Language	English
Publishing date	2023-12-01T00:00:00Z
Publisher	BMC
Document type	Article ; Online
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Article ; Online: An additional brain endocast of the ictidosaur Riograndia guaibensis (Eucynodontia: Probainognathia): intraspecific variation of endocranial traits.

Kerber, Leonardo / Ferreira, JosÉ Darival / Fonseca, Pedro Henrique M / Franco, Arymatheia / Martinelli, AgustÍn G / Soares, Marina Bento / Ribeiro, Ana Maria

Anais da Academia Brasileira de Ciencias

2021 Volume 93, Issue suppl 2, Page(s) e20200084

Abstract: Recently, the morphology and encephalization of the brain endocast of the Triassic non-mammaliaform probainognathian cynodont Riograndia guaibensis were studied. Here, we analyzed the brain endocast of an additional specimen of this species. The new ... ...

Abstract	Recently, the morphology and encephalization of the brain endocast of the Triassic non-mammaliaform probainognathian cynodont Riograndia guaibensis were studied. Here, we analyzed the brain endocast of an additional specimen of this species. The new endocast shows well-defined olfactory bulbs and a median sulcus dividing the hemispheres, traits that were not clearly observed in the first studied specimen. Encephalization quotients were also calculated, revealing similar values to other non-mammaliaform cynodonts and lower than those of the first analyzed specimen. The analyzed cranium is slightly larger than the first studied one and may represent an advanced ontogenetic stage. Hence, these differences may be related to the intraspecific variation of this cynodont or alternatively, to the preservation of each specimen.
MeSH term(s)	Biological Evolution ; Brain ; Fossils ; Phenotype ; Phylogeny ; Skull/anatomy & histology
Language	English
Publishing date	2021-03-05
Publishing country	Brazil
Document type	Journal Article
ZDB-ID	2046885-4
ISSN	1678-2690 ; 0001-3765
ISSN (online)	1678-2690
ISSN	0001-3765
DOI	10.1590/0001-3765202120200084
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Article ; Online: Roflumilast promotes memory recovery and attenuates white matter injury in aged rats subjected to chronic cerebral hypoperfusion.

Santiago, Amanda / Soares, Lígia Mendes / Schepers, Melissa / Milani, Humberto / Vanmierlo, Tim / Prickaerts, Jos / Weffort de Oliveira, Rúbia M

Neuropharmacology

2018 Volume 138, Page(s) 360–370

Abstract: Chronic cerebral hypoperfusion (CCH) has been associated with aging-related vascular dementia, including Alzheimer's disease. It can be induced by the four-vessel occlusion/internal carotid artery (4VO/ICA) model in aged rats, resulting in persistent ... ...

Abstract	Chronic cerebral hypoperfusion (CCH) has been associated with aging-related vascular dementia, including Alzheimer's disease. It can be induced by the four-vessel occlusion/internal carotid artery (4VO/ICA) model in aged rats, resulting in persistent memory deficits, white matter injury, and significant neuronal loss in the hippocampus and cerebral cortex. The phosphodiesterase type 4 inhibitor (PDE4-I) roflumilast has been reported to have pro-cognitive effects in several behavioral paradigms. The present study evaluated the effects of repeated roflumilast treatment in aged rats that were subjected to CCH. After surgery, roflumilast (0.003 and 0.01 mg/kg) was administered intraperitoneally once per day for 29 days. Memory performance was assessed in the aversive radial maze (AvRM) 7, 14, and 21 days after CCH. The effects of roflumilast on hippocampal neurodegeneration and white matter injury were investigated using Nissl and Kluver-Barrera staining, respectively. Western blot and RT-qPCR were used to explore microglial polarization using M1 (Iba-1 and iNOS) and M2 (Arginase-1) markers. Chronic cerebral hypoperfusion caused persistent memory deficits, hippocampal neurodegeneration, and vacuolization and fiber disarrangement in white matter. Repeated roflumilast treatment restored CCH-induced cognitive impairments in aged rats but in the absence of the rescue of hippocampal neurons. Attenuation of white matter injury was detected in the optic tract in aged CCH rats that were treated with roflumilast. In vitro, roflumilast increased Arg-1 gene expression in myelin-laden primary microglia. The present data suggest that roflumilast might be useful for the treatment of cognitive sequelae associated with CCH.
MeSH term(s)	Aging/drug effects ; Aging/pathology ; Aminopyridines/pharmacology ; Animals ; Arginase/metabolism ; Benzamides/pharmacology ; Brain Ischemia/complications ; Brain Ischemia/drug therapy ; Brain Ischemia/metabolism ; Brain Ischemia/pathology ; Chronic Disease ; Cyclopropanes/pharmacology ; Disease Models, Animal ; Dose-Response Relationship, Drug ; Gene Expression Regulation/drug effects ; Hippocampus/drug effects ; Hippocampus/metabolism ; Hippocampus/pathology ; Male ; Maze Learning/drug effects ; Maze Learning/physiology ; Memory Disorders/drug therapy ; Memory Disorders/etiology ; Memory Disorders/metabolism ; Memory Disorders/pathology ; Microglia/drug effects ; Microglia/metabolism ; Microglia/pathology ; Neurodegenerative Diseases/drug therapy ; Neurodegenerative Diseases/etiology ; Neurodegenerative Diseases/metabolism ; Neurodegenerative Diseases/pathology ; Neuroprotective Agents/pharmacology ; Nootropic Agents/pharmacology ; Optic Tract/drug effects ; Optic Tract/metabolism ; Optic Tract/pathology ; Random Allocation ; Rats, Wistar ; White Matter/drug effects ; White Matter/metabolism ; White Matter/pathology
Chemical Substances	Aminopyridines ; Benzamides ; Cyclopropanes ; Neuroprotective Agents ; Nootropic Agents ; Roflumilast (0P6C6ZOP5U) ; Arginase (EC 3.5.3.1) ; arginase I, rat (EC 3.5.3.1)
Language	English
Publishing date	2018-06-19
Publishing country	England
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	218272-5
ISSN	1873-7064 ; 0028-3908
ISSN (online)	1873-7064
ISSN	0028-3908
DOI	10.1016/j.neuropharm.2018.06.019
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Article ; Online: Activation of 5-HT

Aguiar, Rafael Pazinatto / Soares, Lígia Mendes / Meyer, Erika / da Silveira, Fernanda Canova / Milani, Humberto / Newman-Tancredi, Adrian / Varney, Mark / Prickaerts, Jos / Oliveira, Rúbia M Weffort

Progress in neuro-psychopharmacology & biological psychiatry

2019 Volume 99, Page(s) 109832

Abstract: Pharmacological interventions that selectively activate serotonin 5-hydroxytryptramine-1A (5- ... ...

Abstract	Pharmacological interventions that selectively activate serotonin 5-hydroxytryptramine-1A (5-HT
MeSH term(s)	Animals ; Brain Ischemia/drug therapy ; Brain Ischemia/metabolism ; Male ; Mice ; Mice, Inbred C57BL ; Neuronal Plasticity/drug effects ; Neuronal Plasticity/physiology ; Piperidines/pharmacology ; Piperidines/therapeutic use ; Pyrimidines/pharmacology ; Pyrimidines/therapeutic use ; Receptor, Serotonin, 5-HT1A/metabolism ; Recovery of Function/drug effects ; Recovery of Function/physiology ; Serotonin 5-HT1 Receptor Agonists/pharmacology ; Serotonin 5-HT1 Receptor Agonists/therapeutic use
Chemical Substances	3-chloro-4-fluorophenyl-(4-fluoro-4-(((5-methylpyrimidin-2-ylmethyl)amino)methyl)piperidin-1-yl)methanone ; Htr1a protein, mouse ; Piperidines ; Pyrimidines ; Serotonin 5-HT1 Receptor Agonists ; Receptor, Serotonin, 5-HT1A (112692-38-3)
Language	English
Publishing date	2019-12-03
Publishing country	England
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	781181-0
ISSN	1878-4216 ; 0278-5846
ISSN (online)	1878-4216
ISSN	0278-5846
DOI	10.1016/j.pnpbp.2019.109832
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Article: Land use intensification in the humid tropics increased both alpha and beta diversity of soil bacteria.

de Carvalho, Teotonio Soares / Jesus, Ederson da Conceição / Barlow, Jos / Gardner, Toby A / Soares, Isaac Carvalho / Tiedje, James M / Moreira, Fatima Maria de Souza

Ecology

2016 Volume 97, Issue 10, Page(s) 2760–2771

Abstract: Anthropogenic pressures on tropical forests are rapidly intensifying, but our understanding of their implications for biological diversity is still very limited, especially with regard to soil biota, and in particular soil bacterial communities. Here we ... ...

Abstract	Anthropogenic pressures on tropical forests are rapidly intensifying, but our understanding of their implications for biological diversity is still very limited, especially with regard to soil biota, and in particular soil bacterial communities. Here we evaluated bacterial community composition and diversity across a gradient of land use intensity in the eastern Amazon from undisturbed primary forest, through primary forests varyingly disturbed by fire, regenerating secondary forest, pasture, and mechanized agriculture. Soil bacteria were assessed by paired-end Illumina sequencing of 16S rRNA gene fragments (V4 region). The resulting sequences were clustered into operational taxonomic units (OTU) at a 97% similarity threshold. Land use intensification increased the observed bacterial diversity (both OTU richness and community heterogeneity across space) and this effect was strongly associated with changes in soil pH. Moreover, land use intensification and subsequent changes in soil fertility, especially pH, altered the bacterial community composition, with pastures and areas of mechanized agriculture displaying the most contrasting communities in relation to undisturbed primary forest. Together, these results indicate that tropical forest conversion impacts soil bacteria not through loss of diversity, as previously thought, but mainly by imposing marked shifts on bacterial community composition, with unknown yet potentially important implications for ecological functions and services performed by these communities.
MeSH term(s)	Agriculture ; Bacteria/genetics ; Biodiversity ; Forests ; RNA, Ribosomal, 16S ; Soil ; Soil Microbiology
Chemical Substances	RNA, Ribosomal, 16S ; Soil
Language	English
Publishing date	2016-10
Publishing country	United States
Document type	Journal Article
ZDB-ID	1797-8
ISSN	0012-9658
ISSN	0012-9658
DOI	10.1002/ecy.1513
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Article ; Online: The phosphodiesterase type 2 inhibitor BAY 60-7550 reverses functional impairments induced by brain ischemia by decreasing hippocampal neurodegeneration and enhancing hippocampal neuronal plasticity.

Soares, Ligia Mendes / Meyer, Erika / Milani, Humberto / Steinbusch, Harry W M / Prickaerts, Jos / de Oliveira, Rúbia M Weffort

The European journal of neuroscience

2017 Volume 45, Issue 4, Page(s) 510–520

Abstract: Cognitive and affective impairments are the most characterized consequences following cerebral ischemia. BAY 60-7550, a selective phosphodiesterase type 2 inhibitor (PDE2-I), presents memory-enhancing and anxiolytic-like properties. The behavioral ... ...

Abstract	Cognitive and affective impairments are the most characterized consequences following cerebral ischemia. BAY 60-7550, a selective phosphodiesterase type 2 inhibitor (PDE2-I), presents memory-enhancing and anxiolytic-like properties. The behavioral effects of BAY 60-7550 have been associated with its ability to prevent hydrolysis of both cyclic adenosine monophosphate (cAMP) and cyclic guanosine monophosphate (cGMP) thereby interfering with neuronal plasticity. Here, we hypothesize that PDE2-I treatment could promote functional recovery after brain ischemia. Mice C57Bl/6 were submitted to bilateral common carotid artery occlusion (BCCAO), an experimental model of transient brain ischemia, for 20 min. During 21 days after reperfusion, the animals were tested in a battery of behavioral tests including the elevated zero maze (EZM), object location task (OLT) and forced swim test (FST). The effects of BAY 60-7550 were evaluated on neuronal nuclei (NeuN), caspase-9, cAMP response element-binding protein (CREB), phosphorylated CREB (pCREB) and brain-derived neurotrophic factor (BDNF) expression in the hippocampus. BCCAO increased anxiety levels, impaired hippocampus-dependent cognitive function and induced despair-like behavior in mice. Hippocampal neurodegeneration was evidenced by a decrease in NeuN and increase incaspase-9 protein levels in BCCAO mice. Ischemic mice also showed low BDNF protein levels in the hippocampus. Repeated treatment with BAY 60-7550 attenuated the behavioral impairments induced by BCCAO in mice. Concomitantly, BAY 60-7550 enhanced expression of pCREB and BDNF protein levels in the hippocampus of ischemic mice. The present findings suggest that chronic inhibition of PDE2 provides functional recovery in BCCAO mice possibly by augmenting hippocampal neuronal plasticity.
MeSH term(s)	Animals ; Brain Ischemia/drug therapy ; Brain-Derived Neurotrophic Factor/genetics ; Brain-Derived Neurotrophic Factor/metabolism ; Caspase 9/genetics ; Caspase 9/metabolism ; Cyclic AMP Response Element-Binding Protein/genetics ; Cyclic AMP Response Element-Binding Protein/metabolism ; Exonucleases/antagonists & inhibitors ; Hippocampus/blood supply ; Hippocampus/drug effects ; Imidazoles/pharmacology ; Imidazoles/therapeutic use ; Male ; Maze Learning ; Mice ; Mice, Inbred C57BL ; Nerve Tissue Proteins/genetics ; Nerve Tissue Proteins/metabolism ; Neuronal Plasticity ; Neurons/drug effects ; Neurons/metabolism ; Neurons/physiology ; Nuclear Proteins/genetics ; Nuclear Proteins/metabolism ; Phosphodiesterase Inhibitors/pharmacology ; Phosphodiesterase Inhibitors/therapeutic use ; Triazines/pharmacology ; Triazines/therapeutic use
Chemical Substances	2-(3,4-dimethoxybenzyl)-7-(1-(1-hydroxyethyl)-4-phenylbutyl)-5-methylimidazo(5,1-f)(1,2,4)triazin-4 (3H)-one ; Brain-Derived Neurotrophic Factor ; Cyclic AMP Response Element-Binding Protein ; Imidazoles ; Nerve Tissue Proteins ; NeuN protein, mouse ; Nuclear Proteins ; Phosphodiesterase Inhibitors ; Triazines ; Exonucleases (EC 3.1.-) ; spleen exonuclease (EC 3.1.16.1) ; Caspase 9 (EC 3.4.22.-)
Language	English
Publishing date	2017
Publishing country	France
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	645180-9
ISSN	1460-9568 ; 0953-816X
ISSN (online)	1460-9568
ISSN	0953-816X
DOI	10.1111/ejn.13461
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Article ; Online: NLX-101, a 5-HT

Aguiar, Rafael Pazinatto / Soares, Lígia Mendes / Varney, Mark / Newman-Tancredi A, Adrian / Milani, Humberto / Prickaerts, Jos / de Oliveira, Rúbia Maria Weffort

Neurobiology of aging

2022 Volume 124, Page(s) 52–59

Abstract: ... 5- ... ...

Abstract	5-HT
MeSH term(s)	Rats ; Animals ; Receptor, Serotonin, 5-HT1A ; Brain-Derived Neurotrophic Factor ; Serotonin/metabolism ; Serotonin 5-HT1 Receptor Agonists/pharmacology ; Serotonin Receptor Agonists
Chemical Substances	3-chloro-4-fluorophenyl-(4-fluoro-4-(((5-methyl-6-methylaminopyridin-2-ylmethyl)amino)methyl)piperidin-1-yl)methanone ; 3-chloro-4-fluorophenyl-(4-fluoro-4-(((5-methylpyrimidin-2-ylmethyl)amino)methyl)piperidin-1-yl)methanone ; Receptor, Serotonin, 5-HT1A (112692-38-3) ; Brain-Derived Neurotrophic Factor ; Serotonin (333DO1RDJY) ; Serotonin 5-HT1 Receptor Agonists ; Serotonin Receptor Agonists
Language	English
Publishing date	2022-12-31
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	604505-4
ISSN	1558-1497 ; 0197-4580
ISSN (online)	1558-1497
ISSN	0197-4580
DOI	10.1016/j.neurobiolaging.2022.12.013
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Article ; Online: LoCoBoard

Christophe Soares / Rui S. Moreira / José M. Torres / Pedro Sobral

ISRN Machine Vision, Vol

Low-Cost Interactive Whiteboard Using Computer Vision Algorithms

2013 Volume 2013

Keywords	Electronic computers. Computer science ; QA75.5-76.95 ; Instruments and machines ; QA71-90 ; Mathematics ; QA1-939 ; Science ; Q ; DOAJ:Computer Science ; DOAJ:Technology and Engineering
Language	English
Publishing date	2013-01-01T00:00:00Z
Publisher	Hindawi Publishing Corporation
Document type	Article ; Online
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