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  1. Article ; Online: Physical and biological properties of electrospun poly(d,l-lactide)/nanoclay and poly(d,l-lactide)/nanosilica nanofibrous scaffold for bone tissue engineering.

    Lopresti, Francesco / Pavia, Francesco Carfì / Ceraulo, Manuela / Capuana, Elisa / Brucato, Valerio / Ghersi, Giulio / Botta, Luigi / La Carrubba, Vincenzo

    Journal of biomedical materials research. Part A

    2021  Volume 109, Issue 11, Page(s) 2120–2136

    Abstract: Electrospun scaffolds exhibiting high physical performances with the ability to support cell attachment and proliferation are attracting more and more scientific interest for tissue engineering applications. The inclusion of inorganic nanoparticles such ... ...

    Abstract Electrospun scaffolds exhibiting high physical performances with the ability to support cell attachment and proliferation are attracting more and more scientific interest for tissue engineering applications. The inclusion of inorganic nanoparticles such as nanosilica and nanoclay into electrospun biopolymeric matrices can meet these challenging requirements. The silica and clay incorporation into polymeric nanofibers has been reported to enhance and improve the mechanical properties as well as the osteogenic properties of the scaffolds. In this work, for the first time, the physical and biological properties of polylactic acid (PLA) electrospun mats filled with different concentrations of nanosilica and nanoclay were evaluated and compared. The inclusion of the particles was evaluated through morphological investigations and Fourier transform infrared spectroscopy. The morphology of nanofibers was differently affected by the amount and kind of fillers and it was correlated to the viscosity of the polymeric suspensions. The wettability of the scaffolds, evaluated through wet contact angle measurements, slightly increased for both the nanocomposites. The crystallinity of the systems was investigated by differential scanning calorimetry highlighting the nucleating action of both nanosilica and nanoclay on PLA. Scaffolds were mechanically characterized with tensile tests to evaluate the reinforcing action of the fillers. Finally, cell culture assays with pre-osteoblastic cells were conducted on a selected composite scaffold in order to compare the cell proliferation and morphology with that of neat PLA scaffolds. Based on the results, we can convince that nanosilica and nanoclay can be both considered great potential fillers for electrospun systems engineered for bone tissue regeneration.
    MeSH term(s) Animals ; Bone and Bones/metabolism ; Cell Line ; Mice ; Nanocomposites/chemistry ; Nanofibers/chemistry ; Osteogenesis ; Polyesters/chemistry ; Tissue Engineering ; Tissue Scaffolds/chemistry
    Chemical Substances Polyesters ; poly(lactide) (459TN2L5F5)
    Language English
    Publishing date 2021-05-04
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2099989-6
    ISSN 1552-4965 ; 1549-3296 ; 0021-9304
    ISSN (online) 1552-4965
    ISSN 1549-3296 ; 0021-9304
    DOI 10.1002/jbm.a.37199
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: The quest for a better insight into physiology of fluids and barriers of the brain: the exemplary career of Joseph D. Fenstermacher.

    Chodobski, Adam / Ghersi-Egea, Jean-François / Nicholson, Charles / Nagaraja, Tavarekere N / Szmydynger-Chodobska, Joanna

    Fluids and barriers of the CNS

    2015  Volume 12, Page(s) 1

    Abstract: In June 2014 Dr. Joseph D. Fenstermacher celebrated his 80th birthday, which was honored ...

    Abstract In June 2014 Dr. Joseph D. Fenstermacher celebrated his 80th birthday, which was honored by the symposium held in New London, NH, USA. This review discusses Fenstermacher's contribution to the field of fluids and barriers of the CNS. Specifically, his fundamental work on diffusion of molecules within the brain extracellular space and the research on properties of the blood-brain barrier in health and disease are described. Fenstermacher's early research on cerebrospinal fluid dynamics and the regulation of cerebral blood flow is also reviewed, followed by the discussion of his more recent work involving the use of magnetic resonance imaging.
    Language English
    Publishing date 2015
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 2595406-4
    ISSN 2045-8118
    ISSN 2045-8118
    DOI 10.1186/2045-8118-12-1
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Modeling preferential attraction to infected hosts in vector-borne diseases.

    Thapa, Ishwor / Ghersi, Dario

    Frontiers in public health

    2023  Volume 11, Page(s) 1276029

    Abstract: Vector-borne infectious diseases cause more than 700,000 deaths a year and represent an increasing threat to public health worldwide. Strategies to mitigate the spread of vector-borne diseases can benefit from a thorough understanding of all mechanisms ... ...

    Abstract Vector-borne infectious diseases cause more than 700,000 deaths a year and represent an increasing threat to public health worldwide. Strategies to mitigate the spread of vector-borne diseases can benefit from a thorough understanding of all mechanisms that contribute to viral propagation in human. A recent study showed that
    MeSH term(s) Animals ; Humans ; Mosquito Vectors ; Zika Virus ; Zika Virus Infection/epidemiology ; Aedes ; Vector Borne Diseases
    Language English
    Publishing date 2023-11-22
    Publishing country Switzerland
    Document type Journal Article ; Comment
    ZDB-ID 2711781-9
    ISSN 2296-2565 ; 2296-2565
    ISSN (online) 2296-2565
    ISSN 2296-2565
    DOI 10.3389/fpubh.2023.1276029
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Variant calling enhances the identification of cancer cells in single-cell RNA sequencing data.

    Gasper, William / Rossi, Francesca / Ligorio, Matteo / Ghersi, Dario

    PLoS computational biology

    2022  Volume 18, Issue 10, Page(s) e1010576

    Abstract: Single-cell RNA-sequencing is an invaluable research tool that allows for the investigation of gene expression in heterogeneous cancer cell populations in ways that bulk RNA-seq cannot. However, normal (i.e., non tumor) cells in cancer samples have the ... ...

    Abstract Single-cell RNA-sequencing is an invaluable research tool that allows for the investigation of gene expression in heterogeneous cancer cell populations in ways that bulk RNA-seq cannot. However, normal (i.e., non tumor) cells in cancer samples have the potential to confound the downstream analysis of single-cell RNA-seq data. Existing methods for identifying cancer and normal cells include copy number variation inference, marker-gene expression analysis, and expression-based clustering. This work aims to extend the existing approaches for identifying cancer cells in single-cell RNA-seq samples by incorporating variant calling and the identification of putative driver alterations. We found that putative driver alterations can be detected in single-cell RNA-seq data obtained with full-length transcript technologies and noticed that a subset of cells in tumor samples are enriched for putative driver alterations as compared to normal cells. Furthermore, we show that the number of putative driver alterations and inferred copy number variation are not correlated in all samples. Taken together, our findings suggest that augmenting existing cancer-cell filtering methods with variant calling and analysis can increase the number of tumor cells that can be confidently included in downstream analyses of single-cell full-length transcript RNA-seq datasets.
    MeSH term(s) Cluster Analysis ; DNA Copy Number Variations/genetics ; High-Throughput Nucleotide Sequencing/methods ; Humans ; Neoplasms/genetics ; RNA/genetics ; RNA-Seq ; Sequence Analysis, RNA/methods ; Single-Cell Analysis/methods
    Chemical Substances RNA (63231-63-0)
    Language English
    Publishing date 2022-10-03
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, N.I.H., Extramural
    ZDB-ID 2193340-6
    ISSN 1553-7358 ; 1553-734X
    ISSN (online) 1553-7358
    ISSN 1553-734X
    DOI 10.1371/journal.pcbi.1010576
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Research translation and chronic illness.

    Ghersi, Davina

    The Medical journal of Australia

    2014  Volume 201, Issue 6, Page(s) 312

    MeSH term(s) Australia ; Chronic Disease/therapy ; Humans ; Translational Medical Research
    Language English
    Publishing date 2014-05-13
    Publishing country Australia
    Document type Journal Article
    ZDB-ID 186082-3
    ISSN 1326-5377 ; 0025-729X
    ISSN (online) 1326-5377
    ISSN 0025-729X
    DOI 10.5694/mja14.01133
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Cross-reactivity influences changes in human influenza A virus and Epstein Barr virus specific CD8 memory T cell receptor alpha and beta repertoires between young and old.

    Clark, Fransenio / Gil, Anna / Thapa, Ishwor / Aslan, Nuray / Ghersi, Dario / Selin, Liisa K

    Frontiers in immunology

    2023  Volume 13, Page(s) 1011935

    Abstract: Older people have difficulty controlling infection with common viruses such as influenza A virus (IAV), RNA virus which causes recurrent infections due to a high rate of genetic mutation, and Epstein Barr virus (EBV), DNA virus which persists in B cells ... ...

    Abstract Older people have difficulty controlling infection with common viruses such as influenza A virus (IAV), RNA virus which causes recurrent infections due to a high rate of genetic mutation, and Epstein Barr virus (EBV), DNA virus which persists in B cells for life in the 95% of people that become acutely infected. We questioned whether changes in epitope-specific memory CD8 T cell receptor (TCR) repertoires to these two common viruses could occur with increasing age and contribute to waning immunity. We compared CD8 memory TCR alpha and beta repertoires in two HLA-A2+ EBV- and IAV-immune donors, young (Y) and older (O) donors to three immunodominant epitopes known to be cross-reactive, IAV-M1
    MeSH term(s) Humans ; Aged ; Herpesvirus 4, Human ; Epstein-Barr Virus Infections/genetics ; Reinfection ; CD8-Positive T-Lymphocytes ; Receptors, Antigen, T-Cell, alpha-beta/genetics ; Receptors, Antigen, T-Cell/genetics ; Complementarity Determining Regions ; Epitopes ; Influenza A virus
    Chemical Substances Receptors, Antigen, T-Cell, alpha-beta ; Receptors, Antigen, T-Cell ; Complementarity Determining Regions ; Epitopes
    Language English
    Publishing date 2023-02-24
    Publishing country Switzerland
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, N.I.H., Extramural
    ZDB-ID 2606827-8
    ISSN 1664-3224 ; 1664-3224
    ISSN (online) 1664-3224
    ISSN 1664-3224
    DOI 10.3389/fimmu.2022.1011935
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Identifying Molecular Fragments That Drive 7-Dehydrocholesterol Elevation.

    Ghersi, Dario / Genaro-Mattos, Thiago C

    ACS pharmacology & translational science

    2021  Volume 5, Issue 1, Page(s) 3–7

    Abstract: Medications having the unwanted side effect of inhibiting 7-dehydrocholesterol reductase (DHCR7), one of the last enzymes in the cholesterol biosynthesis pathway, account for about 300 million yearly prescriptions in the United States. Many of these ... ...

    Abstract Medications having the unwanted side effect of inhibiting 7-dehydrocholesterol reductase (DHCR7), one of the last enzymes in the cholesterol biosynthesis pathway, account for about 300 million yearly prescriptions in the United States. Many of these drugs are currently prescribed to pregnant women. Many DHCR7-inhibiting medications share chemical similarities, which can be the active substructure responsible for the medication affinity to the enzyme. This work highlights a computational strategy to identify enriched fragments in a set of DHCR7-inhibiting medications. The computational approach used here involves systematic fragmentation of molecules using the molBLOCKS tool, followed by enrichment analysis. The results of this approach highlight putative pharmacophores that might be responsible for the DHCR7-inhibiting activity of some of these medications. The identification of DHCR7-inhibiting substructures is an important step toward knowledge-based drug development and can improve the neurodevelopmental safety of medications.
    Language English
    Publishing date 2021-12-29
    Publishing country United States
    Document type Journal Article
    ISSN 2575-9108
    ISSN (online) 2575-9108
    DOI 10.1021/acsptsci.1c00236
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: ACE2 fragment as a decoy for novel SARS-Cov-2 virus

    Renzi, Fabiana / Ghersi, Dario

    bioRxiv

    Abstract: Novel SARS-Cov-2 enters human cells via interaction between the surface spike (S) glycoprotein and the cellular membrane receptor angiotensin-converting enzyme 2 (ACE2). Using a combination of comparative structural analyses of the binding surface of the ...

    Abstract Novel SARS-Cov-2 enters human cells via interaction between the surface spike (S) glycoprotein and the cellular membrane receptor angiotensin-converting enzyme 2 (ACE2). Using a combination of comparative structural analyses of the binding surface of the S protein to ACE2, docking experiments, and molecular dynamics simulations we computationally identified a minimal, stable fragment of ACE2. This fragment binds to the S protein, is soluble, and appears not to bind to the physiological ligand angiotensinII. These results suggest a possible use of the ACE2 fragment as a decoy that could interfere with viral binding by competition.
    Keywords covid19
    Language English
    Publishing date 2020-04-10
    Publisher Cold Spring Harbor Laboratory
    Document type Article ; Online
    DOI 10.1101/2020.04.06.028647
    Database COVID19

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  9. Article ; Online: ACE2 fragment as a decoy for novel SARS-Cov-2 virus

    Renzi, Fabiana / Ghersi, Dario

    bioRxiv

    Abstract: Novel SARS-Cov-2 enters human cells via interaction between the surface spike (S) glycoprotein and the cellular membrane receptor angiotensin-converting enzyme 2 (ACE2). Using a combination of comparative structural analyses of the binding surface of the ...

    Abstract Novel SARS-Cov-2 enters human cells via interaction between the surface spike (S) glycoprotein and the cellular membrane receptor angiotensin-converting enzyme 2 (ACE2). Using a combination of comparative structural analyses of the binding surface of the S protein to ACE2, docking experiments, and molecular dynamics simulations we computationally identified a minimal, stable fragment of ACE2. This fragment binds to the S protein, is soluble, and appears not to bind to the physiological ligand angiotensinII. These results suggest a possible use of the ACE2 fragment as a decoy that could interfere with viral binding by competition.
    Keywords covid19
    Publisher BioRxiv; WHO
    Document type Article ; Online
    DOI 10.1101/2020.04.06.028647
    Database COVID19

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  10. Article ; Online: Engineering an ACE2-Derived Fragment as a Decoy for Novel SARS-CoV-2 Virus.

    Renzi, Fabiana / Seamann, Austin / Ganguly, Koelina / Pandey, Kabita / Byrareddy, Siddappa N / Batra, Surinder / Kumar, Sushil / Ghersi, Dario

    ACS pharmacology & translational science

    2023  Volume 6, Issue 6, Page(s) 857–867

    Abstract: Entry inhibitors are an important resource in the response against emerging pathogens like the novel SARS-CoV-2, which enters human cells via interaction between the surface spike glycoprotein and the cellular membrane receptor angiotensin-converting ... ...

    Abstract Entry inhibitors are an important resource in the response against emerging pathogens like the novel SARS-CoV-2, which enters human cells via interaction between the surface spike glycoprotein and the cellular membrane receptor angiotensin-converting enzyme 2 (ACE2). Using a combination of comparative structural analyses of the binding surface of the spike to ACE2, docking experiments, and molecular dynamics simulations, we identified a stable fragment of ACE2 that binds to the spike, is soluble, and is not predicted to bind to its physiological ligand angiotensin II. From this fragment we computationally designed and experimentally validated a smaller, stable peptide that disrupts ACE2-spike interaction at nanomolar concentrations, suggesting its potential use as a decoy that could interfere with viral binding by competition.
    Language English
    Publishing date 2023-05-22
    Publishing country United States
    Document type Journal Article
    ISSN 2575-9108
    ISSN (online) 2575-9108
    DOI 10.1021/acsptsci.2c00180
    Database MEDical Literature Analysis and Retrieval System OnLINE

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