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  1. Article ; Online: Transport of hydroxyapatite nanoparticles coated with polyacrylic acid under unsaturated water flow in soil columns

    Zhang, Zengyu / Chen, Y. / Mandler, Daniel / Shenker, Moshe

    Soil Science and Plant Nutrition. 2023 Mar. 04, v. 69, no. 2 p.124-136

    2023  

    Abstract: Phosphorus (P) nanoparticles were hypothesized to exhibit greater mobility in soils than water-soluble P (WSP) and were therefore proposed to be used as a P fertilizer. Unsaturated transport is the main pathway from the application site to plant roots. ... ...

    Abstract Phosphorus (P) nanoparticles were hypothesized to exhibit greater mobility in soils than water-soluble P (WSP) and were therefore proposed to be used as a P fertilizer. Unsaturated transport is the main pathway from the application site to plant roots. Though its importance to fertilizer efficacy, quantitative evaluation of unsaturated transport of P nanoparticles has been overlooked to date. Mobility of spherical nano-hydroxyapatite particles coated with polyacrylic acid (PAA-nHAP) suspension and WSP (a mixture of KH₂PO₄ and K₂HPO₄) was evaluated in breakthrough column experiments under unsaturated states using three soils: alkaline sand (sandy-alk), acidic sandy clay loam (sandy-ac) and clayey soils. Next, P retention was determined by total P extraction layer-by-layer from the disassembled soil columns. In all soils, PAA-nHAP exhibited faster transport compared to WSP. In the sandy-alk soil, earlier breakthrough but lower plateau of the final relative P concentration of PAA-nHAP (64.0% vs. 100% of the input P concentration) and consistent low P retention with depth after washing with 10 mM KBr solution for the two sources were observed. In the other two soils, PAA-nHAP displayed greater retention near the inlet and decreased retention with depth. In the sandy-ac soil, no WSP and low final relative concentrations of PAA-nHAP (11.6%) were transported through the soil column. The retention of PAA-nHAP was much lower than that of WSP with depth. In the clayey soil, the breakthrough (relative P concentration >1%) occurred earlier (~35 pore volumes vs. ~45 pore volumes) and the eluted P concentration increased more rapidly (~2.6 times) for PAA-nHAP compared to WSP. The difference between the two sources mainly occurred at the soil surface with higher retention of WSP. Soil properties affected the P retention capacity of the two P sources, but for all soils, P mobility was increased by changing from the common soluble fertilizers to nanoparticles. Adsorption and size exclusion effect are suggested as the major factors affecting nHAP mobility. We suggest that the nHAP transport can be improved by modifying its coating with more negative zeta-potential to decrease coagulation and adopting drip flows with short hydraulic retention time. The design of the nanoparticles needs to take into account soil properties.
    Keywords adsorption ; clay soils ; coagulation ; hydroxyapatite ; nanoparticles ; phosphorus ; phosphorus fertilizers ; plant nutrition ; polyacrylic acid ; quantitative analysis ; sand ; sandy clay loam soils ; soluble phosphorus ; water flow ; zeta potential ; Breakthrough curve ; hydroxyapatite nanoparticle ; phosphorus nanofertilizer ; retention profile ; unsaturated transport
    Language English
    Dates of publication 2023-0304
    Size p. 124-136.
    Publishing place Taylor & Francis
    Document type Article ; Online
    ZDB-ID 406719-8
    ISSN 1747-0765 ; 0038-0768
    ISSN (online) 1747-0765
    ISSN 0038-0768
    DOI 10.1080/00380768.2022.2163457
    Database NAL-Catalogue (AGRICOLA)

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  2. Article ; Online: Pharmacokinetics of the Recalcitrant Drug Lamotrigine: Identification and Distribution of Metabolites in Cucumber Plants.

    Madmon, Moran / Zvuluni, Yifat / Mordehay, Vered / Hindi, Ariel / Malchi, Tomer / Drug, Eyal / Shenker, Moshe / Weissberg, Avi / Chefetz, Benny

    Environmental science & technology

    2023  Volume 57, Issue 48, Page(s) 20228–20237

    Abstract: Treated wastewater is an important source of water for irrigation. As a result, irrigated crops are chronically exposed to wastewater-derived pharmaceuticals, such as the anticonvulsant drug lamotrigine. Lamotrigine is known to be taken up by plants, but ...

    Abstract Treated wastewater is an important source of water for irrigation. As a result, irrigated crops are chronically exposed to wastewater-derived pharmaceuticals, such as the anticonvulsant drug lamotrigine. Lamotrigine is known to be taken up by plants, but its plant-derived metabolites and their distribution in different plant organs are unknown. This study aimed to detect and identify metabolites of lamotrigine in cucumber plants grown for 35 days in a hydroponic solution by using LC-MS/MS (Orbitrap) analysis. Our data showed that 96% of the lamotrigine taken up was metabolized. Sixteen metabolites possessing a lamotrigine core structure were detected. Reference standards confirmed two; five were tentatively identified, and nine molecular formulas were assigned. The data suggest that lamotrigine is metabolized via N-carbamylation, N-glucosidation, N-alkylation, N-formylation, N-oxidation, and amidine hydrolysis. The metabolites LTG-N
    MeSH term(s) Anticonvulsants/analysis ; Anticonvulsants/metabolism ; Lamotrigine/analysis ; Lamotrigine/metabolism ; Cucumis sativus/metabolism ; Wastewater ; Chromatography, Liquid ; Tandem Mass Spectrometry
    Chemical Substances Anticonvulsants ; Lamotrigine (U3H27498KS) ; Wastewater
    Language English
    Publishing date 2023-11-07
    Publishing country United States
    Document type Journal Article
    ISSN 1520-5851
    ISSN (online) 1520-5851
    DOI 10.1021/acs.est.3c06685
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Establishing a novel community-focussed lactation support service: a descriptive case series.

    Griffin, Samantha / Watt, Jo / Wedekind, Sophie / Bramer, Solange / Hazemi-Jebelli, Yasmin / Boyle, Robert / Weaver, Gillian / Shenker, Natalie S

    International breastfeeding journal

    2022  Volume 17, Issue 1, Page(s) 7

    Abstract: Background: Although breastfeeding is widely acknowledged as protecting both infant and maternal health postnatally, a partial or complete shortfall of maternal milk can occur for a range of reasons. In this eventuality, the currently available options ... ...

    Abstract Background: Although breastfeeding is widely acknowledged as protecting both infant and maternal health postnatally, a partial or complete shortfall of maternal milk can occur for a range of reasons. In this eventuality, the currently available options for feeding infants are screened donor human milk (DHM), infant formula or unscreened shared human milk. In the UK, DHM has only been widely available in specific clinical contexts for the last 40 years, mainly to reduce the risk of necrotising enterocolitis in extremely preterm infants alongside optimal support for maternal lactation and breastfeeding. The Hearts Milk Bank (HMB) was established in 2017 as an independent, non-profit human milk bank that aimed to ensure equitable, assured access to screened DHM for neonatal units. As a result of the generosity of mothers, a surplus of DHM rapidly became available and together with lactation support, has since been provided to families with a healthcare referral. This programme has now been formalised for families facing lactational challenges, and DHM stocks are permanently maintained to meet their needs.
    Case series: This case series describes the clinical paths of four families who accessed lactation support and DHM from the HMB, along with a description of the process for community provision. To date, the HMB has supported over 300 families. Working collaboratively with key stakeholders, the HMB team has developed a prioritisation strategy based on utilitarian ethical models, protocols that ensure safe handling and appropriateness of use, broader donor recruitment parameters that maintain safety with a pragmatic approach for full term healthy infants, and a process to ensure parents or carers have access to the knowledge needed to give informed consent and use DHM appropriately.
    Conclusions: Stakeholders, including parents, healthcare professionals, and milk banks, will need to discuss priorities for both DHM use and research gaps that can underpin the equitable expansion of services, in partnership with National Health Service (NHS) teams and third-sector organisations that support breastfeeding and maternal mental health.
    MeSH term(s) Breast Feeding ; Female ; Humans ; Infant ; Infant, Newborn ; Infant, Premature ; Intensive Care Units, Neonatal ; Lactation ; State Medicine
    Language English
    Publishing date 2022-01-15
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2227239-2
    ISSN 1746-4358 ; 1746-4358
    ISSN (online) 1746-4358
    ISSN 1746-4358
    DOI 10.1186/s13006-021-00446-5
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Evidence of a genetic background predisposing to complex regional pain syndrome type 1.

    Shaikh, Samiha S / Goebel, Andreas / Lee, Michael C / Nahorski, Michael S / Shenker, Nicholas / Pamela, Yunisa / Drissi, Ichrak / Brown, Christopher / Ison, Gillian / Shaikh, Maliha F / Kuttikat, Anoop / Woods, William A / Dixit, Abhishek / Stouffer, Kaitlin / Clarke, Murray Ch / Menon, David K / Woods, C Geoffrey

    Journal of medical genetics

    2024  Volume 61, Issue 2, Page(s) 163–170

    Abstract: Background: Complex regional pain syndrome type 1 (CRPS-1) is a rare, disabling and sometimes chronic disorder usually arising after a trauma. This exploratory study examined whether patients with chronic CRPS-1 have a different genetic profile compared ...

    Abstract Background: Complex regional pain syndrome type 1 (CRPS-1) is a rare, disabling and sometimes chronic disorder usually arising after a trauma. This exploratory study examined whether patients with chronic CRPS-1 have a different genetic profile compared with those who do not have the condition.
    Methods: Exome sequencing was performed to seek altered non-synonymous SNP allele frequencies in a discovery cohort of well-characterised patients with chronic CRPS-1 (n
    Results: In the discovery cohort, the rare allele frequencies of four non-synonymous SNPs were statistically increased. The replication cohort confirmed this finding. In a chronic pain cohort, these alleles were not overexpressed. In total, 25 out of 84 (29.8%) patients with CRPS-1 expressed a rare allele. The SNPs were rs41289586 in
    Conclusion: A single SNP in each of the genes
    MeSH term(s) Male ; Female ; Humans ; Complex Regional Pain Syndromes/genetics ; Complex Regional Pain Syndromes/epidemiology ; Gene Frequency ; Polymorphism, Single Nucleotide/genetics ; Alleles ; Genetic Background
    Language English
    Publishing date 2024-01-19
    Publishing country England
    Document type Journal Article
    ZDB-ID 220881-7
    ISSN 1468-6244 ; 0022-2593
    ISSN (online) 1468-6244
    ISSN 0022-2593
    DOI 10.1136/jmg-2023-109236
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Factors Enhancing the Antibacterial Effect of Monovalent Copper Ions.

    Popov, Stanislav / Saphier, Oshra / Popov, Mary / Shenker, Marina / Entus, Semion / Shotland, Yoram / Saphier, Magal

    Current microbiology

    2019  Volume 77, Issue 3, Page(s) 361–368

    Abstract: This study continues the series of experiments that demonstrate the high antibacterial properties of monovalent copper ions ( ... ...

    Abstract This study continues the series of experiments that demonstrate the high antibacterial properties of monovalent copper ions (Cu
    MeSH term(s) Anti-Bacterial Agents/pharmacology ; Carbon/chemistry ; Copper/pharmacology ; Culture Media/chemistry ; Escherichia coli/drug effects ; Escherichia coli/growth & development ; Hydrogen-Ion Concentration ; Ions ; Microbial Sensitivity Tests ; Temperature
    Chemical Substances Anti-Bacterial Agents ; Culture Media ; Ions ; Carbon (7440-44-0) ; Copper (789U1901C5)
    Language English
    Publishing date 2019-12-12
    Publishing country United States
    Document type Journal Article
    ZDB-ID 134238-1
    ISSN 1432-0991 ; 0343-8651
    ISSN (online) 1432-0991
    ISSN 0343-8651
    DOI 10.1007/s00284-019-01794-6
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: RENIN-SECRETING OVARIAN ADULT GRANULOSA CELL TUMOR IN A PATIENT WITH NEW-ONSET HYPERTENSION AND HYPOKALEMIA.

    Karaman, Rowan / Xu, Jin / Harrison, Ross F / Kushner, David M / Weisman, Paul S / Shenker, Yoram

    AACE clinical case reports

    2018  Volume 5, Issue 2, Page(s) e168–e171

    Abstract: Objective: To describe a case of a renin-secreting ovarian tumor, which is a rare cause of hyperreninemia leading to secondary hypertension and hypokalemia.: Methods: We present the first case of a patient with a molecularly confirmed renin-secreting ...

    Abstract Objective: To describe a case of a renin-secreting ovarian tumor, which is a rare cause of hyperreninemia leading to secondary hypertension and hypokalemia.
    Methods: We present the first case of a patient with a molecularly confirmed renin-secreting ovarian adult granulosa cell tumor.
    Results: A 31-year-old female presented with hypertension and amenorrhea. She was found to have spontaneous hypokalemia. Computed tomography scan showed a pelvic mass which was resected and found to be a renin-secreting ovarian adult granulosa cell tumor. The hypertension and hypokalemia resolved after the mass was resected.
    Conclusion: Renin-secreting ovarian adult granulosa cell tumors are rare causes of hyperreninemia leading to hypertension and hypokalemia.
    Language English
    Publishing date 2018-11-01
    Publishing country United States
    Document type Case Reports
    ISSN 2376-0605
    ISSN (online) 2376-0605
    DOI 10.4158/ACCR-2018-0355
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: Introducing a new reporter gene, membrane-anchored

    Moroz, Maxim A / Zurita, Juan / Moroz, Anna / Nikolov, Ekaterina / Likar, Yury / Dobrenkov, Konstantin / Lee, Jason / Shenker, Larissa / Blasberg, Ronald / Serganova, Inna / Ponomarev, Vladimir

    Molecular therapy oncolytics

    2021  Volume 21, Page(s) 15–22

    Abstract: Bioluminescence reporter gene imaging is a robust, high-throughput imaging modality that is useful for tracking cells and monitoring biological processes, both in cell culture and in small animals. We introduced and characterized a novel bioluminescence ... ...

    Abstract Bioluminescence reporter gene imaging is a robust, high-throughput imaging modality that is useful for tracking cells and monitoring biological processes, both in cell culture and in small animals. We introduced and characterized a novel bioluminescence reporter-membrane-anchored
    Language English
    Publishing date 2021-03-17
    Publishing country United States
    Document type Journal Article
    ISSN 2372-7705
    ISSN 2372-7705
    DOI 10.1016/j.omto.2021.03.004
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Composted biosolids and treated wastewater as sources of pharmaceuticals and personal care products for plant uptake: A case study with carbamazepine.

    Ben Mordechay, Evyatar / Tarchitzky, Jorge / Chen, Yona / Shenker, Moshe / Chefetz, Benny

    Environmental pollution (Barking, Essex : 1987)

    2017  Volume 232, Page(s) 164–172

    Abstract: Irrigation with treated wastewater (TWW) and application of biosolids to arable land expose the agro-environment to pharmaceuticals and personal care products (PPCPs) which can be taken up by crops. In this project, we studied the effect of a carrier ... ...

    Abstract Irrigation with treated wastewater (TWW) and application of biosolids to arable land expose the agro-environment to pharmaceuticals and personal care products (PPCPs) which can be taken up by crops. In this project, we studied the effect of a carrier medium (e.g., biosolids and TWW) on plant (tomato, wheat and lettuce) uptake, translocation and metabolism of carbamazepine as a model for non-ionic PPCPs. Plant uptake and bioconcentration factors were significantly lower in soils amended with biosolids compared to soils irrigated with TWW. In soils amended with biosolids and irrigated with TWW, the bioavailability of carbamazepine for plant uptake was moderately decreased as compared to plants grown in soils irrigated with TWW alone. While TWW acts as a continuous source of PPCPs, biosolids act both as a source and a sink for these compounds. Moreover, it appears that decomposition of the biosolids in the soil after amendment enhances their adsorptive properties, which in turn reduces the bioavailability of PPCPs in the soil environment. In-plant metabolism of carbamazepine was found to be independent of environmental factors, such as soil type, carrier medium, and absolute amount implemented to the soil, but was controlled by the total amount taken up by the plant.
    MeSH term(s) Carbamazepine/analysis ; Carbamazepine/metabolism ; Composting ; Crops, Agricultural/metabolism ; Lactuca/metabolism ; Soil ; Soil Pollutants/analysis ; Soil Pollutants/metabolism ; Waste Disposal, Fluid ; Wastewater/chemistry
    Chemical Substances Soil ; Soil Pollutants ; Waste Water ; Carbamazepine (33CM23913M)
    Language English
    Publishing date 2017-09-19
    Publishing country England
    Document type Journal Article
    ZDB-ID 280652-6
    ISSN 1873-6424 ; 0013-9327 ; 0269-7491
    ISSN (online) 1873-6424
    ISSN 0013-9327 ; 0269-7491
    DOI 10.1016/j.envpol.2017.09.029
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: Effects of irrigation using treated wastewater on table grape vineyards: dynamics of sodium accumulation in soil and plant

    Netzer, Y. / Shenker, M. / Schwartz, A.

    Irrigation Science

    2014  Volume 32, Issue 4, Page(s) 283–294

    Abstract: Vitis vinifera* cv. Superior Seedless; fertilizer; Na+ concentrations; SAR values; salinity tolerance; Paulsen rootstock. [32004] ...

    Institution The Robert H. Smith Institute for Plant Science and Genetics in Agriculture, Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, P.O. Box 12, 76100, Rehovot, Israel
    Abstract *Vitis vinifera* cv. Superior Seedless; fertilizer; Na+ concentrations; SAR values; salinity tolerance; Paulsen rootstock. [32004]
    Language English
    Document type Article
    ZDB-ID 133938-2
    ISSN 1432-1319 ; 0342-7188
    ISSN (online) 1432-1319
    ISSN 0342-7188
    DOI 10.1007/s00271-014-0430-8
    Database Viticulture and Oenology Abstracts

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  10. Article ; Online: IsoSCM: improved and alternative 3' UTR annotation using multiple change-point inference.

    Shenker, Sol / Miura, Pedro / Sanfilippo, Piero / Lai, Eric C

    RNA (New York, N.Y.)

    2015  Volume 21, Issue 1, Page(s) 14–27

    Abstract: Major applications of RNA-seq data include studies of how the transcriptome is modulated at the levels of gene expression and RNA processing, and how these events are related to cellular identity, environmental condition, and/or disease status. While ... ...

    Abstract Major applications of RNA-seq data include studies of how the transcriptome is modulated at the levels of gene expression and RNA processing, and how these events are related to cellular identity, environmental condition, and/or disease status. While many excellent tools have been developed to analyze RNA-seq data, these generally have limited efficacy for annotating 3' UTRs. Existing assembly strategies often fragment long 3' UTRs, and importantly, none of the algorithms in popular use can apportion data into tandem 3' UTR isoforms, which are frequently generated by alternative cleavage and polyadenylation (APA). Consequently, it is often not possible to identify patterns of differential APA using existing assembly tools. To address these limitations, we present a new method for transcript assembly, Isoform Structural Change Model (IsoSCM) that incorporates change-point analysis to improve the 3' UTR annotation process. Through evaluation on simulated and genuine data sets, we demonstrate that IsoSCM annotates 3' termini with higher sensitivity and specificity than can be achieved with existing methods. We highlight the utility of IsoSCM by demonstrating its ability to recover known patterns of tissue-regulated APA. IsoSCM will facilitate future efforts for 3' UTR annotation and genome-wide studies of the breadth, regulation, and roles of APA leveraging RNA-seq data. The IsoSCM software and source code are available from our website https://github.com/shenkers/isoscm.
    MeSH term(s) 3' Untranslated Regions ; Animals ; Computational Biology ; Computer Simulation ; Gene Expression Profiling ; Humans ; Molecular Sequence Annotation ; Reproducibility of Results ; Sequence Analysis, RNA ; Software
    Chemical Substances 3' Untranslated Regions
    Language English
    Publishing date 2015-01
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 1241540-6
    ISSN 1469-9001 ; 1355-8382
    ISSN (online) 1469-9001
    ISSN 1355-8382
    DOI 10.1261/rna.046037.114
    Database MEDical Literature Analysis and Retrieval System OnLINE

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