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  1. Article ; Online: Should a minimum Daptomycin AUC24h of 666 mg/L/h be the target in Staphylococcus aureus infections?

    Tannous, Elias / Lipman-Arens, Shelly / Cohen, Regev

    Clinical infectious diseases : an official publication of the Infectious Diseases Society of America

    2024  

    Language English
    Publishing date 2024-03-06
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1099781-7
    ISSN 1537-6591 ; 1058-4838
    ISSN (online) 1537-6591
    ISSN 1058-4838
    DOI 10.1093/cid/ciae086
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  2. Book: Intelligent Systems in Medicine and Health

    Cohen, Trevor A. / Shortliffe, Edward H. / Patel, Vimla L.

    The Role of AI

    (Cognitive Informatics in Biomedicine and Healthcare)

    2022  

    Author's details Trevor A. Cohen, MBChB, PhD, FACMI is a Professor of Biomedical Informatics and Medical Education at the University of Washington in Seattle. His research focuses on the generation of distributed representations of biomedical concepts, and their application to problems in healthcare and biomedicine. Additional interests include the study and augmentation of clinical comprehension, and its role in error detection and recovery. Before joining the University of Washington, he held academic appointments at the University of Texas Health Sciences Center in Houston (2009-2018) and Arizona State University (2007-2009). Prior to this, and after training and practicing as a physician in South Africa, he completed his informatics doctoral work at Columbia University in New York, with a research focus on the development of automated methods to enhance clinical comprehension in psychiatry. He has published extensively in the areas of distributional semantics and clinical cognition, with applica
    Series title Cognitive Informatics in Biomedicine and Healthcare
    Keywords ArtificialIntelligence ; BiomedicalInformatics ; cognitiveinformatics ; PredictiveModels ; ClinicalDecisionSupport ; ClinicalMachineLearning ; Artificial Intelligence ; Biomedical Informatics ; Cognitive Informatics ; Predictive Models ; Clinical Decision Support ; Clinical Machine Learning ; AI
    Language English
    Size 624 p.
    Edition 1
    Publisher Springer International Publishing
    Document type Book
    Note PDA Manuell_17
    Format 160 x 241 x 37
    ISBN 9783031091070 ; 3031091078
    Database PDA

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  3. Article: Interaction between the lipoamide-containing H-protein and the lipoamide dehydrogenase (L-protein) of the glycine decarboxylase multienzyme system 2. Crystal structures of H- and L-proteins.

    Faure, M / Bourguignon, J / Neuburger, M / MacHerel, D / Sieker, L / Ober, R / Kahn, R / Cohen-Addad, C / Douce, R

    European journal of biochemistry

    2000  Volume 267, Issue 10, Page(s) 2890–2898

    Abstract: The glycine decarboxylase complex consists of four different component enzymes (P-, H-, T- and L ... study, we have crystallized the H-protein in its reduced state and the L-protein (lipoamide ... active site of L-protein. Our results strongly suggest that a direct interaction between the H- and L-proteins ...

    Abstract The glycine decarboxylase complex consists of four different component enzymes (P-, H-, T- and L-proteins). The 14-kDa lipoamide-containing H-protein plays a pivotal role in the complete sequence of reactions as its prosthetic group (lipoic acid) interacts successively with the three other components of the complex and undergoes a cycle of reductive methylamination, methylamine transfer and electron transfer. With the aim to understand the interaction between the H-protein and its different partners, we have previously determined the crystal structure of the oxidized and methylaminated forms of the H-protein. In the present study, we have crystallized the H-protein in its reduced state and the L-protein (lipoamide dehydrogenase or dihydrolipoamide dehydrogenase). The L-protein has been overexpressed in Escherichia coli and refolded from inclusion bodies in an active form. Crystals were obtained from the refolded L-protein and the structure has been determined by X-ray crystallography. This first crystal structure of a plant dihydrolipoamide dehydrogenase is similar to other known dihydrolipoamide dehydrogenase structures. The crystal structure of the H-protein in its reduced form has been determined and compared to the structure of the other forms of the protein. It is isomorphous to the structure of the oxidized form. In contrast with methylaminated H-protein where the loaded lipoamide arm was locked into a cavity of the protein, the reduced lipoamide arm appeared freely exposed to the solvent. Such a freedom is required to allow its targeting inside the hollow active site of L-protein. Our results strongly suggest that a direct interaction between the H- and L-proteins is not necessary for the reoxidation of the reduced lipoamide arm bound to the H-protein. This hypothesis is supported by biochemical data [Neuburger, M., Polidori, A.M., Piètre, E., Faure, M., Jourdain, A., Bourguignon, J., Pucci, B. & Douce, R. (2000) Eur. J. Biochem. 267, 2882-2889] and by small angle X-ray scattering experiments reported herein.
    MeSH term(s) Amino Acid Oxidoreductases/chemistry ; Amino Acid Oxidoreductases/metabolism ; Amino Acid Sequence ; Carrier Proteins/chemistry ; Carrier Proteins/metabolism ; Crystallography, X-Ray ; Dihydrolipoamide Dehydrogenase/chemistry ; Dihydrolipoamide Dehydrogenase/metabolism ; Escherichia coli/metabolism ; Glycine Decarboxylase Complex ; Glycine Decarboxylase Complex H-Protein ; Glycine Dehydrogenase (Decarboxylating) ; Inclusion Bodies/metabolism ; Kinetics ; Models, Chemical ; Models, Molecular ; Molecular Sequence Data ; Oxidation-Reduction ; Plasmids ; Protein Binding ; Protein Conformation ; Protein Folding ; Protein Structure, Tertiary ; Recombinant Proteins/chemistry ; Sequence Homology, Amino Acid ; Thioctic Acid/analogs & derivatives ; Thioctic Acid/metabolism
    Chemical Substances Carrier Proteins ; Glycine Decarboxylase Complex H-Protein ; Recombinant Proteins ; dihydrolipoamide (3884-47-7) ; Thioctic Acid (73Y7P0K73Y) ; Amino Acid Oxidoreductases (EC 1.4.-) ; Glycine Decarboxylase Complex (EC 1.4.4.2) ; Glycine Dehydrogenase (Decarboxylating) (EC 1.4.4.2) ; Dihydrolipoamide Dehydrogenase (EC 1.8.1.4)
    Language English
    Publishing date 2000-05
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 3032-6
    ISSN 1432-1033 ; 0014-2956
    ISSN (online) 1432-1033
    ISSN 0014-2956
    DOI 10.1046/j.1432-1033.2000.01330.x
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  4. Article: Genetic control of HLA-linked immune responsiveness to (H,G)-A-L.

    Katz, D / Suez, D / Brautbar, C / Cohen, T / Bentwich, Z / Mozes, E

    Human immunology

    1986  Volume 15, Issue 1, Page(s) 75–84

    Abstract: ... to (H,G)-A-L. Most of these donors had been previously tested for their ability to respond to (T,G)-A-L ... and were all HLA typed as well. The heredity of the ability to respond to (H,G)-A-L by the production ... A-L is linked to HLA-A. Lod scores also suggested a linkage between immune response potential to (H,G ...

    Abstract Fifty-three donors belonging to seven families were tested for their immune response potential to (H,G)-A-L. Most of these donors had been previously tested for their ability to respond to (T,G)-A-L and were all HLA typed as well. The heredity of the ability to respond to (H,G)-A-L by the production of an antigen-specific helper T cell factor is compatible with an autosomal dominant trait linked to HLA. The genotype of an HLA-A/B recombinant individual suggested that a gene controlling the immune response to (H,G)-A-L is linked to HLA-A. Lod scores also suggested a linkage between immune response potential to (H,G)-A-L and HLA-A. The different patterns of responses to (T,G)-A-L and (H,G)-A-L observed in many individuals are compatible with the notion that separate loci are governing the immune responses to the two synthetic polypeptides.
    MeSH term(s) Female ; Genes, MHC Class II ; HLA Antigens/genetics ; HLA Antigens/immunology ; HLA-A Antigens ; HLA-B Antigens ; Histocompatibility Antigens Class II/genetics ; Humans ; Isoantigens/genetics ; Male ; Pedigree ; Peptides/immunology ; T-Lymphocytes, Helper-Inducer/immunology
    Chemical Substances HLA Antigens ; HLA-A Antigens ; HLA-B Antigens ; Histocompatibility Antigens Class II ; Isoantigens ; Peptides ; poly-(His-Glu)-poly Ala-poly Lys (54365-32-1)
    Language English
    Publishing date 1986-01
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 801524-7
    ISSN 1879-1166 ; 0198-8859
    ISSN (online) 1879-1166
    ISSN 0198-8859
    DOI 10.1016/0198-8859(86)90318-6
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    Zs.A 1597: Show issues Location:
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  5. Article: Interaction between the lipoamide‐containing H‐protein and the lipoamide dehydrogenase (L‐protein) of the glycine decarboxylase multienzyme system: 2. Crystal structures of H‐ and L‐proteins

    Faure, Magali / Bourguignon, Jacques / Neuburger, Michel / Macherel, David / Sieker, Larry / Ober, Raymond / Kahn, Richard / Cohen‐Addad, Claudine / Douce, Roland

    European journal of biochemistry. 2000 May, v. 267, no. 10

    2000  

    Abstract: The glycine decarboxylase complex consists of four different component enzymes (P‐, H‐, T‐ and L ... study, we have crystallized the H‐protein in its reduced state and the L‐protein (lipoamide ... active site of L‐protein. Our results strongly suggest that a direct interaction between the H‐ and L‐proteins ...

    Abstract The glycine decarboxylase complex consists of four different component enzymes (P‐, H‐, T‐ and L‐proteins). The 14‐kDa lipoamide‐containing H‐protein plays a pivotal role in the complete sequence of reactions as its prosthetic group (lipoic acid) interacts successively with the three other components of the complex and undergoes a cycle of reductive methylamination, methylamine transfer and electron transfer. With the aim to understand the interaction between the H‐protein and its different partners, we have previously determined the crystal structure of the oxidized and methylaminated forms of the H‐protein. In the present study, we have crystallized the H‐protein in its reduced state and the L‐protein (lipoamide dehydrogenase or dihydrolipoamide dehydrogenase). The L‐protein has been overexpressed in Escherichia coli and refolded from inclusion bodies in an active form. Crystals were obtained from the refolded L‐protein and the structure has been determined by X‐ray crystallography. This first crystal structure of a plant dihydrolipoamide dehydrogenase is similar to other known dihydrolipoamide dehydrogenase structures. The crystal structure of the H‐protein in its reduced form has been determined and compared to the structure of the other forms of the protein. It is isomorphous to the structure of the oxidized form. In contrast with methylaminated H‐protein where the loaded lipoamide arm was locked into a cavity of the protein, the reduced lipoamide arm appeared freely exposed to the solvent. Such a freedom is required to allow its targeting inside the hollow active site of L‐protein. Our results strongly suggest that a direct interaction between the H‐ and L‐proteins is not necessary for the reoxidation of the reduced lipoamide arm bound to the H‐protein. This hypothesis is supported by biochemical data [Neuburger, M., Polidori, A_m., Piètre, E., Faure, M., Jourdain, A., Bourguignon, J., Pucci, B. & Douce, R. (2000) Eur. J. Biochem.267, 2882–2889] and by small angle X‐ray scattering experiments reported herein.
    Keywords Escherichia coli ; X-radiation ; X-ray diffraction ; active sites ; crystal structure ; crystals ; electron transfer ; enzymes ; inclusion bodies ; lipoic acid ; methylamine ; solvents
    Language English
    Dates of publication 2000-05
    Size p. 2890-2898.
    Publishing place Blackwell Science Ltd
    Document type Article
    ZDB-ID 3032-6
    ISSN 1432-1033 ; 0014-2956
    ISSN (online) 1432-1033
    ISSN 0014-2956
    DOI 10.1046/j.1432-1033.2000.01330.x
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  6. Article: The bioavailability of digoxin from three oral formulations measured by a specific h.p.l.c. assay.

    Cohen, A F / Kroon, R / Schoemaker, H C / Breimer, D D / Van Vliet-Verbeek, A / Brandenburg, H C

    British journal of clinical pharmacology

    1993  Volume 35, Issue 2, Page(s) 136–142

    Abstract: ... measured by h.p.l.c. The cross-reactivity of immunoassays for metabolites of digoxin may produce ...

    Abstract 1. We have studied the absolute bioavailability of three oral formulations of digoxin, 1.0 mg, in 12 young healthy volunteers in a four way randomised cross-over study using an intravenous control. 2. Digoxin tablets (250 micrograms), liquid filled digoxin capsules (100 micrograms) and an experimental enteric-coated capsule (100 micrograms) were evaluated. In vitro dissolution at pH 1 demonstrated extensive hydrolytic breakdown of digoxin from the tablets and capsules but not from the enteric-coated capsules. 3. Serum 'digoxin' concentrations were measured by fluorescence polarization immunoassay (FPI). The systemic availability (+/- s.d.) of the capsules was 70.5 +/- 11.3%, and that of the tablets 71.5 +/- 8.6%. Drug was less available from the enteric-coated capsules (62.1 +/- 10.3%) measured with FPI. These results were reflected in the urinary drug recoveries measured by FPI. 4. By contrast, there were no differences in urinary recovery of unchanged digoxin between any of the oral treatments, when this was measured by h.p.l.c. The cross-reactivity of immunoassays for metabolites of digoxin may produce artefactual results and the optimal pharmaceutical formulation for digoxin remains to be determined.
    MeSH term(s) Administration, Oral ; Adult ; Biological Availability ; Blood Pressure/drug effects ; Capsules ; Chromatography, High Pressure Liquid ; Digoxin/blood ; Digoxin/pharmacokinetics ; Digoxin/pharmacology ; Digoxin/urine ; Electrocardiography/drug effects ; Female ; Fluorescence Polarization ; Humans ; Injections, Intravenous ; Male ; Tablets, Enteric-Coated
    Chemical Substances Capsules ; Tablets, Enteric-Coated ; Digoxin (73K4184T59)
    Language English
    Publishing date 1993-02
    Publishing country England
    Document type Clinical Trial ; Comparative Study ; Journal Article ; Randomized Controlled Trial
    ZDB-ID 188974-6
    ISSN 1365-2125 ; 0306-5251 ; 0264-3774
    ISSN (online) 1365-2125
    ISSN 0306-5251 ; 0264-3774
    DOI 10.1111/j.1365-2125.1993.tb05679.x
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    Zs.A 1118: Show issues Location:
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  7. Article: L'hormone lactogénique placentaire (H.P.L.) Une nouvelle hormone chorionique.

    Cohen, M / Haour, F / Bertrand, J / Dumont, M

    Gynecologie et obstetrique

    1970  Volume 69, Issue 3, Page(s) 197–218

    Title translation Placental lactogenic hormone (H.P.L.). A new chorionic hormone.
    MeSH term(s) Abortion, Spontaneous/physiopathology ; Abortion, Threatened/physiopathology ; Bone Development ; Carbohydrate Metabolism ; Chorionic Gonadotropin/secretion ; Female ; Fetal Death/physiopathology ; Fetus/physiology ; Glucose/metabolism ; Growth Hormone/secretion ; Humans ; Insulin/blood ; Insulin/urine ; Iodine Isotopes ; Lactation ; Lipid Metabolism ; Placenta/physiology ; Placenta Diseases/physiopathology ; Placenta Previa/physiopathology ; Placental Hormones ; Placental Lactogen/analysis ; Placental Lactogen/blood ; Placental Lactogen/isolation & purification ; Placental Lactogen/metabolism ; Placental Lactogen/physiology ; Placental Lactogen/secretion ; Pregnancy ; Pregnancy Complications/physiopathology ; Pregnancy in Diabetics/physiopathology ; Proteins/metabolism ; Radioimmunoassay ; Trophoblasts/secretion
    Chemical Substances Chorionic Gonadotropin ; Insulin ; Iodine Isotopes ; Placental Hormones ; Proteins ; Growth Hormone (9002-72-6) ; Placental Lactogen (9035-54-5) ; Glucose (IY9XDZ35W2)
    Language French
    Publishing date 1970-05
    Publishing country France
    Document type Journal Article
    ZDB-ID 121671-5
    ISSN 0017-601X
    ISSN 0017-601X
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  8. Article: Comment on "Calculated mpc values for PuO2 by comparing the added risk of cancer with the accepted occupational risks" by A. H. de Bont and L. B. Beentjes.

    Cohen, B L

    Health physics

    1980  Volume 39, Issue 1, Page(s) 121–122

    MeSH term(s) Environmental Exposure ; Humans ; Maximum Allowable Concentration ; Neoplasms, Radiation-Induced/etiology ; Occupational Diseases/etiology ; Plutonium/adverse effects ; Risk
    Chemical Substances Plutonium (53023GN24M)
    Language English
    Publishing date 1980-07
    Publishing country United States
    Document type Letter
    ZDB-ID 2406-5
    ISSN 1538-5159 ; 0017-9078
    ISSN (online) 1538-5159
    ISSN 0017-9078
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    Zs.MO 253: Show issues

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  9. Article ; Online: Effects of aromatherapy on patient satisfaction with procedural abortion at less than 10 weeks' gestation: A randomized controlled trial.

    Free, Leanne L / Sheeder, Jeanelle / Cohen, Rebecca H

    Contraception

    2023  Volume 130, Page(s) 110311

    MeSH term(s) Pregnancy ; Female ; Humans ; Patient Satisfaction ; Pain, Procedural/etiology ; Pain, Procedural/prevention & control ; Aromatherapy ; Pregnancy Trimester, First ; Abortion, Induced/methods
    Language English
    Publishing date 2023-10-17
    Publishing country United States
    Document type Randomized Controlled Trial ; Journal Article
    ZDB-ID 80106-9
    ISSN 1879-0518 ; 0010-7824
    ISSN (online) 1879-0518
    ISSN 0010-7824
    DOI 10.1016/j.contraception.2023.110311
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  10. Article ; Online: muFlowReacT: A Library to Solve Multiphase Multicomponent Reactive Transport on Unstructured Meshes.

    Atteia, O / Prommer, H / Vlassopoulos, D / André, L / Cohen, G

    Ground water

    2023  

    Abstract: In this paper we present a new reactive transport code for the efficient simulation of groundwater quality problems. The new code couples the two previously existing tools OpenFoam and PhreeqcRM. The major objective of the development was to transfer and ...

    Abstract In this paper we present a new reactive transport code for the efficient simulation of groundwater quality problems. The new code couples the two previously existing tools OpenFoam and PhreeqcRM. The major objective of the development was to transfer and expand the capabilities of the MODFLOW/MT3DMS-family of codes, especially their outstanding ability to suppress numerical dispersion, to a versatile and computationally efficient code for unstructured grids. Owing to the numerous, previously existing transport solvers contained in OpenFoam, the newly developed code achieves this objective and provides a solid basis for future expansions of the code capabilities. The flexibility of the OpenFoam framework is illustrated by the addition of diffusional processes for gaseous compounds in the unsaturated zone and the advection of gases (multiphase transport). The code capabilities and accuracy are illustrated through several examples: (1) a simple 2D case for conservative solute transport under saturated conditions, (2) a gas diffusion case with reactions in the unsaturated zone, (3) a hydrogeologically complex 3D reactive transport problem, and finally (4) the injection of CO
    Language English
    Publishing date 2023-07-31
    Publishing country United States
    Document type Journal Article
    ZDB-ID 246212-6
    ISSN 1745-6584 ; 0017-467X
    ISSN (online) 1745-6584
    ISSN 0017-467X
    DOI 10.1111/gwat.13345
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    Z 4456: Show issues

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