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  1. Article: Cannabinoid Receptor Signaling is Dependent on Sub-Cellular Location.

    Thomas, Alix / Lobingier, Braden T / Schultz, Carsten / Laguerre, Aurélien

    bioRxiv : the preprint server for biology

    2024  

    Abstract: G protein-coupled receptors (GPCRs) are membrane bound signaling molecules that regulate many aspects of human physiology. Recent advances have demonstrated that GPCR signaling can occur both at the cell surface and internal cellular membranes. Our ... ...

    Abstract G protein-coupled receptors (GPCRs) are membrane bound signaling molecules that regulate many aspects of human physiology. Recent advances have demonstrated that GPCR signaling can occur both at the cell surface and internal cellular membranes. Our findings suggest that cannabinoid receptor 1 (CB1) signaling is highly dependent on its subcellular location. We find that intracellular CB1 receptors predominantly couple to Gαi while plasma membrane receptors couple to Gαs. Here we show subcellular location of CB1, and its signaling, is contingent on the choice of promoters and receptor tags. Heterologous expression with a strong promoter or N-terminal tag resulted in CB1 predominantly localizing to the plasma membrane and signaling through Gαs. Conversely, CB1 driven by low expressing promoters and lacking N-terminal genetic tags largely localized to internal membranes and signals via Gαi. Lastly, we demonstrate that genetically encodable non-canonical amino acids (ncAA) offer a solution to the problem of non-native N-terminal tags disrupting CB1 signaling. We identified sites in CB1R and CB2R which can be tagged with fluorophores without disrupting CB signaling or trafficking using (
    Language English
    Publishing date 2024-03-22
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2024.03.21.586146
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: A cellular perspective of bias at G protein-coupled receptors.

    Fernandez, Thomas J / De Maria, Monica / Lobingier, Braden T

    Protein science : a publication of the Protein Society

    2020  Volume 29, Issue 6, Page(s) 1345–1354

    Abstract: G protein-coupled receptors (GPCRs) modulate cell function over short- and long-term timescales. GPCR signaling depends on biochemical parameters that define the what, when, and where of receptor function: what proteins mediate and regulate receptor ... ...

    Abstract G protein-coupled receptors (GPCRs) modulate cell function over short- and long-term timescales. GPCR signaling depends on biochemical parameters that define the what, when, and where of receptor function: what proteins mediate and regulate receptor signaling, where within the cell these interactions occur, and how long these interactions persist. These parameters can vary significantly depending on the activating ligand. Collectivity, differential agonist activity at a GPCR is called bias or functional selectivity. Here we review agonist bias at GPCRs with a focus on ligands that show dramatically different cellular responses from their unbiased counterparts.
    MeSH term(s) Animals ; Humans ; Kinetics ; Ligands ; Receptors, G-Protein-Coupled/agonists ; Receptors, G-Protein-Coupled/metabolism ; Signal Transduction/drug effects
    Chemical Substances Ligands ; Receptors, G-Protein-Coupled
    Language English
    Publishing date 2020-04-27
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Review
    ZDB-ID 1106283-6
    ISSN 1469-896X ; 0961-8368
    ISSN (online) 1469-896X
    ISSN 0961-8368
    DOI 10.1002/pro.3872
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Profiling the proximal proteome of the activated μ-opioid receptor.

    Polacco, Benjamin J / Lobingier, Braden T / Blythe, Emily E / Abreu, Nohely / Khare, Prachi / Howard, Matthew K / Gonzalez-Hernandez, Alberto J / Xu, Jiewei / Li, Qiongyu / Novy, Brandon / Naing, Zun Zar Chi / Shoichet, Brian K / Coyote-Maestas, Willow / Levitz, Joshua / Krogan, Nevan J / Von Zastrow, Mark / Hüttenhain, Ruth

    Nature chemical biology

    2024  

    Abstract: The μ-opioid receptor (μOR) represents an important target of therapeutic and abused drugs. So far, most understanding of μOR activity has focused on a subset of known signal transducers and regulatory molecules. Yet μOR signaling is coordinated by ... ...

    Abstract The μ-opioid receptor (μOR) represents an important target of therapeutic and abused drugs. So far, most understanding of μOR activity has focused on a subset of known signal transducers and regulatory molecules. Yet μOR signaling is coordinated by additional proteins in the interaction network of the activated receptor, which have largely remained invisible given the lack of technologies to interrogate these networks systematically. Here we describe a proteomics and computational approach to map the proximal proteome of the activated μOR and to extract subcellular location, trafficking and functional partners of G-protein-coupled receptor (GPCR) activity. We demonstrate that distinct opioid agonists exert differences in the μOR proximal proteome mediated by endocytosis and endosomal sorting. Moreover, we identify two new μOR network components, EYA4 and KCTD12, which are recruited on the basis of receptor-triggered G-protein activation and might form a previously unrecognized buffering system for G-protein activity broadly modulating cellular GPCR signaling.
    Language English
    Publishing date 2024-03-25
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2202962-X
    ISSN 1552-4469 ; 1552-4450
    ISSN (online) 1552-4469
    ISSN 1552-4450
    DOI 10.1038/s41589-024-01588-3
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: When trafficking and signaling mix: How subcellular location shapes G protein-coupled receptor activation of heterotrimeric G proteins.

    Lobingier, Braden T / von Zastrow, Mark

    Traffic (Copenhagen, Denmark)

    2018  Volume 20, Issue 2, Page(s) 130–136

    Abstract: G protein-coupled receptors (GPCRs) physically connect extracellular information with intracellular signal propagation. Membrane trafficking plays a supportive role by "bookending" signaling events: movement through the secretory pathway delivers GPCRs ... ...

    Abstract G protein-coupled receptors (GPCRs) physically connect extracellular information with intracellular signal propagation. Membrane trafficking plays a supportive role by "bookending" signaling events: movement through the secretory pathway delivers GPCRs to the cell surface where receptors can sample the extracellular environment, while endocytosis and endolysosomal membrane trafficking provide a versatile system to titrate cellular signaling potential and maintain homeostatic control. Recent evidence suggests that, in addition to these important effects, GPCR trafficking actively shapes the cellular signaling response by altering the location and timing of specific receptor-mediated signaling reactions. Here, we review key experimental evidence underlying this expanding view, focused on GPCR signaling mediated through activation of heterotrimeric G proteins located in the cytoplasm. We then discuss lingering and emerging questions regarding the interface between GPCR signaling and trafficking.
    MeSH term(s) Animals ; Endosomes/metabolism ; Humans ; Protein Multimerization ; Protein Transport ; Receptors, G-Protein-Coupled/chemistry ; Receptors, G-Protein-Coupled/metabolism ; Signal Transduction
    Chemical Substances Receptors, G-Protein-Coupled
    Language English
    Publishing date 2018-12-18
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Review
    ZDB-ID 1483852-7
    ISSN 1600-0854 ; 1398-9219
    ISSN (online) 1600-0854
    ISSN 1398-9219
    DOI 10.1111/tra.12634
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Sec1/Munc18 protein Vps33 binds to SNARE domains and the quaternary SNARE complex.

    Lobingier, Braden T / Merz, Alexey J

    Molecular biology of the cell

    2012  Volume 23, Issue 23, Page(s) 4611–4622

    Abstract: Soluble N-ethylmaleimide-sensitive factor attachment protein receptor (SNARE) proteins catalyze membrane fusion events in the secretory and endolysosomal systems, and all SNARE-mediated fusion processes require cofactors of the Sec1/Munc18 (SM) family. ... ...

    Abstract Soluble N-ethylmaleimide-sensitive factor attachment protein receptor (SNARE) proteins catalyze membrane fusion events in the secretory and endolysosomal systems, and all SNARE-mediated fusion processes require cofactors of the Sec1/Munc18 (SM) family. Vps33 is an SM protein and subunit of the Vps-C complexes HOPS (homotypic fusion and protein sorting) and CORVET (class C core vacuole/endosome tethering), which are central regulators of endocytic traffic. Here we present biochemical studies of interactions between Saccharomyces cerevisiae vacuolar SNAREs and the HOPS holocomplex or Vps33 alone. HOPS binds the N-terminal H(abc) domain of the Qa-family SNARE Vam3, but Vps33 is not required for this interaction. Instead, Vps33 binds the SNARE domains of Vam3, Vam7, and Nyv1. Vps33 directly binds vacuolar quaternary SNARE complexes, and the affinity of Vps33 for SNARE complexes is greater than for individual SNAREs. Through targeted mutational analyses, we identify missense mutations of Vps33 that produce a novel set of defects, including cargo missorting and the loss of Vps33-HOPS association. Together these data suggest a working model for membrane docking: HOPS associates with N-terminal domains of Vam3 and Vam7 through Vps33-independent interactions, which are followed by binding of Vps33, the HOPS SM protein, to SNARE domains and finally to the quaternary SNARE complex. Our results also strengthen the hypothesis that SNARE complex binding is a core attribute of SM protein function.
    MeSH term(s) Endosomes/metabolism ; Endosomes/ultrastructure ; Membrane Proteins/metabolism ; Munc18 Proteins/metabolism ; Mutation, Missense ; Protein Binding ; Protein Transport ; Qa-SNARE Proteins/metabolism ; SNARE Proteins/metabolism ; Saccharomyces cerevisiae/genetics ; Saccharomyces cerevisiae/physiology ; Saccharomyces cerevisiae Proteins/metabolism ; Synaptosomal-Associated Protein 25/metabolism ; Vacuoles/metabolism ; Vacuoles/ultrastructure ; Vesicular Transport Proteins/metabolism
    Chemical Substances Membrane Proteins ; Munc18 Proteins ; Qa-SNARE Proteins ; SEC1 protein, S cerevisiae ; SNARE Proteins ; Saccharomyces cerevisiae Proteins ; Synaptosomal-Associated Protein 25 ; VAM3 protein, S cerevisiae ; VAM7 protein, S cerevisiae ; VPS33 protein, S cerevisiae ; Vesicular Transport Proteins
    Language English
    Publishing date 2012-10-10
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 1098979-1
    ISSN 1939-4586 ; 1059-1524
    ISSN (online) 1939-4586
    ISSN 1059-1524
    DOI 10.1091/mbc.E12-05-0343
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Effects of endocytosis on receptor-mediated signaling.

    Irannejad, Roshanak / Tsvetanova, Nikoleta G / Lobingier, Braden T / von Zastrow, Mark

    Current opinion in cell biology

    2015  Volume 35, Page(s) 137–143

    Abstract: Cellular mechanisms of membrane traffic and signal transduction are deeply interconnected. The present review discusses how membrane trafficking in the endocytic pathway impacts receptor-mediated signaling. Examples of recent progress are highlighted, ... ...

    Abstract Cellular mechanisms of membrane traffic and signal transduction are deeply interconnected. The present review discusses how membrane trafficking in the endocytic pathway impacts receptor-mediated signaling. Examples of recent progress are highlighted, focusing on the endocytosis-signaling nexus in mammals.
    MeSH term(s) Animals ; Biological Transport ; Endocytosis ; Endosomes/metabolism ; Humans ; Signal Transduction/physiology
    Language English
    Publishing date 2015-06-06
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 1026381-0
    ISSN 1879-0410 ; 0955-0674
    ISSN (online) 1879-0410
    ISSN 0955-0674
    DOI 10.1016/j.ceb.2015.05.005
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  7. Article ; Online: A Genetically Encoded Biosensor Reveals Location Bias of Opioid Drug Action.

    Stoeber, Miriam / Jullié, Damien / Lobingier, Braden T / Laeremans, Toon / Steyaert, Jan / Schiller, Peter W / Manglik, Aashish / von Zastrow, Mark

    Neuron

    2018  Volume 98, Issue 5, Page(s) 963–976.e5

    Abstract: Opioid receptors (ORs) precisely modulate behavior when activated by native peptide ligands but distort behaviors to produce pathology when activated by non-peptide drugs. A fundamental question is how drugs differ from peptides in their actions on ... ...

    Abstract Opioid receptors (ORs) precisely modulate behavior when activated by native peptide ligands but distort behaviors to produce pathology when activated by non-peptide drugs. A fundamental question is how drugs differ from peptides in their actions on target neurons. Here, we show that drugs differ in the subcellular location at which they activate ORs. We develop a genetically encoded biosensor that directly detects ligand-induced activation of ORs and uncover a real-time map of the spatiotemporal organization of OR activation in living neurons. Peptide agonists produce a characteristic activation pattern initiated in the plasma membrane and propagating to endosomes after receptor internalization. Drugs produce a different activation pattern by additionally driving OR activation in the somatic Golgi apparatus and Golgi elements extending throughout the dendritic arbor. These results establish an approach to probe the cellular basis of neuromodulation and reveal that drugs distort the spatiotemporal landscape of neuronal OR activation.
    MeSH term(s) Analgesics, Opioid/metabolism ; Animals ; Biosensing Techniques ; Cell Membrane/metabolism ; Dendrites/metabolism ; Endosomes/metabolism ; Enkephalin, Ala(2)-MePhe(4)-Gly(5)-/metabolism ; Enkephalin, D-Penicillamine (2,5)-/metabolism ; Enkephalin, Leucine-2-Alanine/metabolism ; Golgi Apparatus/metabolism ; HEK293 Cells ; HeLa Cells ; Humans ; Intracellular Space ; Microscopy, Fluorescence ; Morphine/metabolism ; Naloxone ; Narcotic Antagonists ; Neurons/metabolism ; Peptides/metabolism ; Rats ; Receptors, Opioid/metabolism ; Spatio-Temporal Analysis
    Chemical Substances Analgesics, Opioid ; Narcotic Antagonists ; Peptides ; Receptors, Opioid ; Enkephalin, Ala(2)-MePhe(4)-Gly(5)- (100929-53-1) ; Naloxone (36B82AMQ7N) ; Enkephalin, Leucine-2-Alanine (63631-40-3) ; Morphine (76I7G6D29C) ; Enkephalin, D-Penicillamine (2,5)- (88373-73-3)
    Language English
    Publishing date 2018-05-10
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Video-Audio Media
    ZDB-ID 808167-0
    ISSN 1097-4199 ; 0896-6273
    ISSN (online) 1097-4199
    ISSN 0896-6273
    DOI 10.1016/j.neuron.2018.04.021
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  8. Article ; Online: SM proteins Sly1 and Vps33 co-assemble with Sec17 and SNARE complexes to oppose SNARE disassembly by Sec18.

    Lobingier, Braden T / Nickerson, Daniel P / Lo, Sheng-Ying / Merz, Alexey J

    eLife

    2014  Volume 3, Page(s) e02272

    Abstract: Secretory and endolysosomal fusion events are driven by SNAREs and cofactors, including Sec17/α-SNAP, Sec18/NSF, and Sec1/Munc18 (SM) proteins. SMs are essential for fusion in vivo, but the basis of this requirement is enigmatic. We now report that, in ... ...

    Abstract Secretory and endolysosomal fusion events are driven by SNAREs and cofactors, including Sec17/α-SNAP, Sec18/NSF, and Sec1/Munc18 (SM) proteins. SMs are essential for fusion in vivo, but the basis of this requirement is enigmatic. We now report that, in addition to their established roles as fusion accelerators, SM proteins Sly1 and Vps33 directly shield SNARE complexes from Sec17- and Sec18-mediated disassembly. In vivo, wild-type Sly1 and Vps33 function are required to withstand overproduction of Sec17. In vitro, Sly1 and Vps33 impede SNARE complex disassembly by Sec18 and ATP. Unexpectedly, Sec17 directly promotes selective loading of Sly1 and Vps33 onto cognate SNARE complexes. A large thermodynamic barrier limits SM binding, implying that significant conformational rearrangements are involved. In a working model, Sec17 and SMs accelerate fusion mediated by cognate SNARE complexes and protect them from NSF-mediated disassembly, while mis-assembled or non-cognate SNARE complexes are eliminated through kinetic proofreading by Sec18.DOI: http://dx.doi.org/10.7554/eLife.02272.001.
    MeSH term(s) Adenosine Triphosphatases/metabolism ; Golgi Apparatus/metabolism ; Munc18 Proteins/metabolism ; Protein Binding ; SNARE Proteins/metabolism ; Saccharomyces cerevisiae Proteins/metabolism ; Soluble N-Ethylmaleimide-Sensitive Factor Attachment Proteins/metabolism ; Vesicular Transport Proteins/metabolism
    Chemical Substances Munc18 Proteins ; SEC17 protein, S cerevisiae ; SLY1 protein, S cerevisiae ; SNARE Proteins ; Saccharomyces cerevisiae Proteins ; Soluble N-Ethylmaleimide-Sensitive Factor Attachment Proteins ; VPS33 protein, S cerevisiae ; Vesicular Transport Proteins ; Adenosine Triphosphatases (EC 3.6.1.-) ; SEC18 protein, S cerevisiae (EC 3.6.1.-)
    Language English
    Publishing date 2014-05-16
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2687154-3
    ISSN 2050-084X ; 2050-084X
    ISSN (online) 2050-084X
    ISSN 2050-084X
    DOI 10.7554/eLife.02272
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  9. Article ; Online: Sec17 (α-SNAP) and an SM-tethering complex regulate the outcome of SNARE zippering in vitro and in vivo.

    Schwartz, Matthew L / Nickerson, Daniel P / Lobingier, Braden T / Plemel, Rachael L / Duan, Mengtong / Angers, Cortney G / Zick, Michael / Merz, Alexey J

    eLife

    2017  Volume 6

    Abstract: Zippering of SNARE complexes spanning docked membranes is essential for most intracellular fusion events. Here, we explore how SNARE regulators operate on discrete zippering states. The formation of a metastable trans-complex, catalyzed by HOPS and its ... ...

    Abstract Zippering of SNARE complexes spanning docked membranes is essential for most intracellular fusion events. Here, we explore how SNARE regulators operate on discrete zippering states. The formation of a metastable trans-complex, catalyzed by HOPS and its SM subunit Vps33, is followed by subsequent zippering transitions that increase the probability of fusion. Operating independently of Sec18 (NSF) catalysis, Sec17 (α-SNAP) either inhibits or stimulates SNARE-mediated fusion. If HOPS or Vps33 are absent, Sec17 inhibits fusion at an early stage. Thus, Vps33/HOPS promotes productive SNARE assembly in the presence of otherwise inhibitory Sec17. Once SNAREs are partially zipped, Sec17 promotes fusion in either the presence or absence of HOPS, but with faster kinetics when HOPS is absent, suggesting that ejection of the SM is a rate-limiting step.
    MeSH term(s) Intracellular Membranes/physiology ; Membrane Fusion ; SNARE Proteins/metabolism ; Saccharomyces cerevisiae/physiology ; Saccharomyces cerevisiae Proteins/metabolism ; Soluble N-Ethylmaleimide-Sensitive Factor Attachment Proteins/metabolism ; Vesicular Transport Proteins/metabolism
    Chemical Substances SEC17 protein, S cerevisiae ; SNARE Proteins ; Saccharomyces cerevisiae Proteins ; Soluble N-Ethylmaleimide-Sensitive Factor Attachment Proteins ; VPS33 protein, S cerevisiae ; Vesicular Transport Proteins
    Language English
    Publishing date 2017-09-19
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 2687154-3
    ISSN 2050-084X ; 2050-084X
    ISSN (online) 2050-084X
    ISSN 2050-084X
    DOI 10.7554/eLife.27396
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  10. Article ; Online: An Approach to Spatiotemporally Resolve Protein Interaction Networks in Living Cells.

    Lobingier, Braden T / Hüttenhain, Ruth / Eichel, Kelsie / Miller, Kenneth B / Ting, Alice Y / von Zastrow, Mark / Krogan, Nevan J

    Cell

    2017  Volume 169, Issue 2, Page(s) 350–360.e12

    Abstract: Cells operate through protein interaction networks organized in space and time. Here, we describe an approach to resolve both dimensions simultaneously by using proximity labeling mediated by engineered ascorbic acid peroxidase (APEX). APEX has been used ...

    Abstract Cells operate through protein interaction networks organized in space and time. Here, we describe an approach to resolve both dimensions simultaneously by using proximity labeling mediated by engineered ascorbic acid peroxidase (APEX). APEX has been used to capture entire organelle proteomes with high temporal resolution, but its breadth of labeling is generally thought to preclude the higher spatial resolution necessary to interrogate specific protein networks. We provide a solution to this problem by combining quantitative proteomics with a system of spatial references. As proof of principle, we apply this approach to interrogate proteins engaged by G-protein-coupled receptors as they dynamically signal and traffic in response to ligand-induced activation. The method resolves known binding partners, as well as previously unidentified network components. Validating its utility as a discovery pipeline, we establish that two of these proteins promote ubiquitin-linked receptor downregulation after prolonged activation.
    MeSH term(s) Animals ; Ascorbate Peroxidases/chemistry ; Humans ; Lysosomes/metabolism ; Protein Interaction Maps ; Protein Transport ; Receptors, G-Protein-Coupled/metabolism ; Receptors, Opioid/metabolism ; Staining and Labeling/methods ; Ubiquitin/metabolism
    Chemical Substances Receptors, G-Protein-Coupled ; Receptors, Opioid ; Ubiquitin ; Ascorbate Peroxidases (EC 1.11.1.11)
    Language English
    Publishing date 2017-04-09
    Publishing country United States
    Document type Journal Article ; Research Support, U.S. Gov't, Non-P.H.S. ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 187009-9
    ISSN 1097-4172 ; 0092-8674
    ISSN (online) 1097-4172
    ISSN 0092-8674
    DOI 10.1016/j.cell.2017.03.022
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