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  1. Article ; Online: Human Olfactory Receptor Sensor for Odor Reconstitution.

    Kuroda, Shun'ichi / Nakaya-Kishi, Yukiko / Tatematsu, Kenji / Hinuma, Shuji

    Sensors (Basel, Switzerland)

    2023  Volume 23, Issue 13

    Abstract: Among the five human senses, light, sound, and force perceived by the eye, ear, and skin, respectively are physical phenomena, and therefore can be easily measured and expressed as objective, univocal, and simple digital data with physical quantity. ... ...

    Abstract Among the five human senses, light, sound, and force perceived by the eye, ear, and skin, respectively are physical phenomena, and therefore can be easily measured and expressed as objective, univocal, and simple digital data with physical quantity. However, as taste and odor molecules perceived by the tongue and nose are chemical phenomena, it has been difficult to express them as objective and univocal digital data, since no reference chemicals can be defined. Therefore, while the recording, saving, transmitting to remote locations, and replaying of human visual, auditory, and tactile information as digital data in digital devices have been realized (this series of data flow is defined as DX (digital transformation) in this review), the DX of human taste and odor information is not yet in the realization stage. Particularly, since there are at least 400,000 types of odor molecules and an infinite number of complex odors that are mixtures of these molecules, it has been considered extremely difficult to realize "human olfactory DX" by converting all odors perceived by human olfaction into digital data. In this review, we discuss the current status and future prospects of the development of "human olfactory DX", which we believe can be realized by utilizing odor sensors that employ the olfactory receptors (ORs) that support human olfaction as sensing molecules (i.e., human OR sensor).
    MeSH term(s) Humans ; Odorants ; Receptors, Odorant ; Smell ; Nose ; Tongue
    Chemical Substances Receptors, Odorant
    Language English
    Publishing date 2023-07-05
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2052857-7
    ISSN 1424-8220 ; 1424-8220
    ISSN (online) 1424-8220
    ISSN 1424-8220
    DOI 10.3390/s23136164
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Cell Shape and Cell Lineage Conversion

    Yukiko Nakaya / Guojun Sheng

    The Journal of Poultry Science, Vol 52, Iss 1, Pp 1-

    2015  Volume 6

    Abstract: The organization of animal cells in vivo can be categorized as being either epithelial or mesenchymal. Inter-conversions between these two states, epithelial-mesenchymal transition (EMT) and mesenchymal-epithelial transition (MET), often represent key ... ...

    Abstract The organization of animal cells in vivo can be categorized as being either epithelial or mesenchymal. Inter-conversions between these two states, epithelial-mesenchymal transition (EMT) and mesenchymal-epithelial transition (MET), often represent key events in animal development and pathogenesis. The molecular and cellular mechanisms by which cell-cell and cell-substrate interactions are governed during EMT/MET have been examined extensively. Recent studies have also shown that EMT/MET is implicated in the acquisition of stemness in cancer cells and is accompanied by changes in epigenetic modifications. Ongoing progresses in regenerative medicine suggest that morphological and physical changes can facilitate somatic cell reprogramming and help achieve stemness. In this review, we will describe the principles of EMT/MET, their roles in cancer and normal animal development, and their relationship to stemness. We will conclude by emphasizing that studying cell shape changes in development is important for mechanistic understanding of how EMT/MET contributes to cell lineage conversion in cancer research and therapeutic medicine.
    Keywords cell shape ; cell biology ; chick ; epithelial mesenchymal transition ; pluripotency ; cancer stem cell ; Animal culture ; SF1-1100
    Subject code 571
    Language English
    Publishing date 2015-01-01T00:00:00Z
    Publisher Japan Poultry Science Association
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article: An autopsy case of COVID-19 with a sudden death: Clinico-pathological comparison.

    Shishido-Hara, Yukiko / Furukawa, Keizo / Nishio, Manabu / Honda, Kohei / Tando, So / Yaoi, Takeshi / Kawamoto, Masataka / Maehara, Yosuke / Nakaya, Takaaki / Itoh, Kyoko

    Clinical case reports

    2022  Volume 10, Issue 6, Page(s) e5961

    Abstract: Autopsy was performed on a COVID-19 patient, who suddenly died despite the extensive anti-viral and anti-inflammatory therapies. Although moderate subpleural fibrosis was seen, pathology of DAD, a well-known cause for pulmonary failure, was minimum. ... ...

    Abstract Autopsy was performed on a COVID-19 patient, who suddenly died despite the extensive anti-viral and anti-inflammatory therapies. Although moderate subpleural fibrosis was seen, pathology of DAD, a well-known cause for pulmonary failure, was minimum. Instead, severe hemorrhage was observed. Therapeutic effects were indicated; however, why severe hemorrhage occurred was unclear.
    Language English
    Publishing date 2022-06-09
    Publishing country England
    Document type Case Reports
    ZDB-ID 2740234-4
    ISSN 2050-0904
    ISSN 2050-0904
    DOI 10.1002/ccr3.5961
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Biomechanical regulation of EMT and epithelial morphogenesis in amniote epiblast.

    Hamidi, Sofiane / Nakaya, Yukiko / Nagai, Hiroki / Alev, Cantas / Shibata, Tatsuo / Sheng, Guojun

    Physical biology

    2019  Volume 16, Issue 4, Page(s) 41002

    Abstract: Epiblast is composed of pluripotent cells which will give rise to all cell lineages in a human body. It forms a single-cell layered epithelium conserved among all amniotic vertebrates (birds, reptiles and mammals) and undergoes complex morphogenesis both ...

    Abstract Epiblast is composed of pluripotent cells which will give rise to all cell lineages in a human body. It forms a single-cell layered epithelium conserved among all amniotic vertebrates (birds, reptiles and mammals) and undergoes complex morphogenesis both before and during gastrulation. Our knowledge of the amniote epiblast is based on data acquired through cellular and molecular analyses of early chick and mouse embryos in vivo and mammalian pluripotent stem cells (PSCs) in vitro. Very few studies have been published on biomechanical characteristics of the amniote epiblast, largely due to lack of experimental tools for measuring and perturbing biomechanical properties. Also missing is a conceptual framework that can integrate both biomechanical and molecular parameters of the epiblast. This review is aimed at providing a background based on which epiblast morphogenesis, including its transition between the epithelial and mesenchymal states, can be understood from a biomechanical perspective. This simple developmental biology system is suitable for testing a multitude of theoretical models in biomechanics, leading to a better understanding of biomechanical logics and constraints governing multicellular organization.
    MeSH term(s) Animals ; Biomechanical Phenomena/physiology ; Cell Communication/physiology ; Cell Line ; Epithelial Cells/metabolism ; Epithelial-Mesenchymal Transition/physiology ; Gastrulation/physiology ; Germ Layers/cytology ; Germ Layers/growth & development ; Humans ; Models, Theoretical ; Morphogenesis/physiology
    Language English
    Publishing date 2019-04-23
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 2133216-2
    ISSN 1478-3975 ; 1478-3967
    ISSN (online) 1478-3975
    ISSN 1478-3967
    DOI 10.1088/1478-3975/ab1048
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: EMT in developmental morphogenesis.

    Nakaya, Yukiko / Sheng, Guojun

    Cancer letters

    2013  Volume 341, Issue 1, Page(s) 9–15

    Abstract: Carcinomas, cancers of epithelial origin, constitute the majority of all cancers. Loss of epithelial characteristics is an early step in carcinoma progression. Malignant transformation and metastasis involve additional loss of cell-cycle control and gain ...

    Abstract Carcinomas, cancers of epithelial origin, constitute the majority of all cancers. Loss of epithelial characteristics is an early step in carcinoma progression. Malignant transformation and metastasis involve additional loss of cell-cycle control and gain of migratory behaviors. Understanding the relationships among epithelial homeostasis, cell proliferation, and cell migration is therefore fundamental in understanding cancer. Interestingly, these cellular events also occur frequently during animal development, but without leading to tumor formation. Can we learn anything about carcinomas from developmental biology? In this review, we focus on one aspect of carcinoma progression, the Epithelial-Mesenchymal Transition (EMT), and provide an overview of how the EMT is involved in normal amniote development. We discuss 12 developmental and morphogenetic processes that clearly involve the EMT. We conclude by emphasizing the diversity of EMT processes both in terms of their developmental context and of their cellular morphogenesis. We propose that there is comparable diversity in cancer microenvironment and molecular regulation of cancer EMTs.
    MeSH term(s) Animals ; Blastocyst/physiology ; Cell Transformation, Neoplastic/pathology ; Embryonic Development/physiology ; Endocardium/embryology ; Epithelial Cells/cytology ; Epithelial Cells/pathology ; Epithelial-Mesenchymal Transition ; Epithelium/physiology ; Female ; Gastrulation/physiology ; Humans ; Kidney/cytology ; Kidney/embryology ; Liver/cytology ; Liver/embryology ; Male ; Mammary Glands, Human/cytology ; Mammary Glands, Human/growth & development ; Morphogenesis/physiology ; Neoplasms/pathology ; Neural Crest/embryology ; Neural Crest/growth & development ; Pancreas/cytology ; Pancreas/embryology ; Prostate/cytology ; Prostate/embryology ; Somites/embryology ; Trophoblasts/pathology
    Language English
    Publishing date 2013-11-28
    Publishing country Ireland
    Document type Journal Article ; Review
    ZDB-ID 195674-7
    ISSN 1872-7980 ; 0304-3835
    ISSN (online) 1872-7980
    ISSN 0304-3835
    DOI 10.1016/j.canlet.2013.02.037
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: EMT in developmental morphogenesis

    Nakaya, Yukiko / Sheng, Guojun

    Cancer letters. 2013 Nov. 28, v. 341, no. 1

    2013  

    Abstract: Carcinomas, cancers of epithelial origin, constitute the majority of all cancers. Loss of epithelial characteristics is an early step in carcinoma progression. Malignant transformation and metastasis involve additional loss of cell-cycle control and gain ...

    Abstract Carcinomas, cancers of epithelial origin, constitute the majority of all cancers. Loss of epithelial characteristics is an early step in carcinoma progression. Malignant transformation and metastasis involve additional loss of cell-cycle control and gain of migratory behaviors. Understanding the relationships among epithelial homeostasis, cell proliferation, and cell migration is therefore fundamental in understanding cancer. Interestingly, these cellular events also occur frequently during animal development, but without leading to tumor formation. Can we learn anything about carcinomas from developmental biology? In this review, we focus on one aspect of carcinoma progression, the Epithelial–Mesenchymal Transition (EMT), and provide an overview of how the EMT is involved in normal amniote development. We discuss 12 developmental and morphogenetic processes that clearly involve the EMT. We conclude by emphasizing the diversity of EMT processes both in terms of their developmental context and of their cellular morphogenesis. We propose that there is comparable diversity in cancer microenvironment and molecular regulation of cancer EMTs.
    Keywords animal development ; carcinoma ; cell cycle ; cell movement ; cell proliferation ; homeostasis ; metastasis ; migratory behavior ; morphogenesis
    Language English
    Dates of publication 2013-1128
    Size p. 9-15.
    Publishing place Elsevier Ireland Ltd
    Document type Article
    ZDB-ID 195674-7
    ISSN 1872-7980 ; 0304-3835
    ISSN (online) 1872-7980
    ISSN 0304-3835
    DOI 10.1016/j.canlet.2013.02.037
    Database NAL-Catalogue (AGRICOLA)

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  7. Article ; Online: Induced pluripotent stem cells of endangered avian species

    Masafumi Katayama / Tomokazu Fukuda / Takehito Kaneko / Yuki Nakagawa / Atsushi Tajima / Mitsuru Naito / Hitomi Ohmaki / Daiji Endo / Makoto Asano / Takashi Nagamine / Yumiko Nakaya / Keisuke Saito / Yukiko Watanabe / Tetsuya Tani / Miho Inoue-Murayama / Nobuyoshi Nakajima / Manabu Onuma

    Communications Biology, Vol 5, Iss 1, Pp 1-

    2022  Volume 20

    Abstract: iPSCs from three endangered avian species (including Okinawa rail, Japanese ptarmigan, and Blakiston’s fish owl) are developed and characterized as a potential resource for their conservation. ...

    Abstract iPSCs from three endangered avian species (including Okinawa rail, Japanese ptarmigan, and Blakiston’s fish owl) are developed and characterized as a potential resource for their conservation.
    Keywords Biology (General) ; QH301-705.5
    Language English
    Publishing date 2022-10-01T00:00:00Z
    Publisher Nature Portfolio
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  8. Article ; Online: Induced pluripotent stem cells of endangered avian species.

    Katayama, Masafumi / Fukuda, Tomokazu / Kaneko, Takehito / Nakagawa, Yuki / Tajima, Atsushi / Naito, Mitsuru / Ohmaki, Hitomi / Endo, Daiji / Asano, Makoto / Nagamine, Takashi / Nakaya, Yumiko / Saito, Keisuke / Watanabe, Yukiko / Tani, Tetsuya / Inoue-Murayama, Miho / Nakajima, Nobuyoshi / Onuma, Manabu

    Communications biology

    2022  Volume 5, Issue 1, Page(s) 1049

    Abstract: The number of endangered avian-related species increase in Japan recently. The application of new technologies, such as induced pluripotent stem cells (iPSCs), may contribute to the recovery of the decreasing numbers of endangered animals and ... ...

    Abstract The number of endangered avian-related species increase in Japan recently. The application of new technologies, such as induced pluripotent stem cells (iPSCs), may contribute to the recovery of the decreasing numbers of endangered animals and conservation of genetic resources. We established novel iPSCs from three endangered avian species (Okinawa rail, Japanese ptarmigan, and Blakiston's fish owl) with seven reprogramming factors (M3O, Sox2, Klf4, c-Myc, Nanog, Lin28, and Klf2). The iPSCs are pluripotency markers and express pluripotency-related genes and differentiated into three germ layers in vivo and in vitro. These three endangered avian iPSCs displayed different cellular characteristics even though the same reprogramming factors use. Japanese ptarmigan-derived iPSCs have different biological characteristics from those observed in other avian-derived iPSCs. Japanese ptarmigan iPSCs contributed to chimeras part in chicken embryos. To the best of our knowledge, our findings provide the first evidence of the potential value of iPSCs as a resource for endangered avian species conservation.
    MeSH term(s) Chick Embryo ; Animals ; Induced Pluripotent Stem Cells ; Cellular Reprogramming ; Endangered Species ; Cell Differentiation/genetics ; Transcription Factors/genetics
    Chemical Substances Transcription Factors
    Language English
    Publishing date 2022-10-24
    Publishing country England
    Document type Journal Article
    ISSN 2399-3642
    ISSN (online) 2399-3642
    DOI 10.1038/s42003-022-03964-y
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Mesenchymal-epithelial transition regulates initiation of pluripotency exit before gastrulation.

    Hamidi, Sofiane / Nakaya, Yukiko / Nagai, Hiroki / Alev, Cantas / Kasukawa, Takeya / Chhabra, Sapna / Lee, Ruda / Niwa, Hitoshi / Warmflash, Aryeh / Shibata, Tatsuo / Sheng, Guojun

    Development (Cambridge, England)

    2020  Volume 147, Issue 3

    Abstract: The pluripotent epiblast gives rise to all tissues and organs in the adult body. Its differentiation starts at gastrulation, when the epiblast generates mesoderm and endoderm germ layers through epithelial-mesenchymal transition (EMT). Although ... ...

    Abstract The pluripotent epiblast gives rise to all tissues and organs in the adult body. Its differentiation starts at gastrulation, when the epiblast generates mesoderm and endoderm germ layers through epithelial-mesenchymal transition (EMT). Although gastrulation EMT coincides with loss of epiblast pluripotency, pluripotent cells in development and
    MeSH term(s) Animals ; Cell Differentiation ; Cell Line ; Chick Embryo ; Endoderm/cytology ; Epithelial-Mesenchymal Transition/physiology ; Gastrulation/physiology ; Gene Expression Regulation, Developmental ; Humans ; Mesoderm/cytology ; Morphogenesis/genetics ; Pluripotent Stem Cells/cytology
    Language English
    Publishing date 2020-02-03
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 90607-4
    ISSN 1477-9129 ; 0950-1991
    ISSN (online) 1477-9129
    ISSN 0950-1991
    DOI 10.1242/dev.184960
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Molecular detection of microbial colonization in cervical mucus of women with and without endometriosis.

    Akiyama, Kanoko / Nishioka, Keisuke / Khan, Khaleque N / Tanaka, Yukiko / Mori, Taisuke / Nakaya, Takaaki / Kitawaki, Jo

    American journal of reproductive immunology (New York, N.Y. : 1989)

    2019  Volume 82, Issue 2, Page(s) e13147

    Abstract: Problem: Intrauterine microbial colonization and its association with the pathogenesis of endometriosis via an innate immune cascade have been reported. As a potential source of microbial transmission, information on microbial colonization in cervical ... ...

    Abstract Problem: Intrauterine microbial colonization and its association with the pathogenesis of endometriosis via an innate immune cascade have been reported. As a potential source of microbial transmission, information on microbial colonization in cervical mucus is unknown. We investigated pattern of microbiota in the cervical mucus collected from women with and without endometriosis using next-generation sequencing (NGS) technology.
    Method of study: Cervical mucus samples were collected from women with (n = 30) and without (n = 39) endometriosis. The communities of microbiota in cervical mucus in the endometriosis group and the control group were examined by Gram staining and NGS targeting the V5-V6 region of 16S ribosomal RNA gene. Copy number of some target bacteria was detected by real-time PCR.
    Results: We confirmed visual presence of bacteria in cervical mucus by Gram staining. NGS analysis showed that distribution of microbiota was similar in cervical mucus of women with and without endometriosis regardless of the phases of the menstrual cycle. In addition to predominant Lactobacilli spp., the populations of Corynebacterium, Enterobacteriaceae, Flavobacterium, Pseudomonas, and Streptococcus were increased in the endometriosis group. Of them, Enterobacteriaceae and Streptococcus were identified as the more significant candidates in the endometriosis group than in controls by real-time PCR (P < 0.05 for each).
    Conclusion: Our NGS analysis of cervical mucus indicated that among a variable microbiota, two candidates (Enterobacteriaceae and Streptococcus) were more frequently detected in women with endometriosis. Further investigation is needed to elucidate a mechanistic link of these bacteria in the pathophysiology of endometriosis.
    MeSH term(s) Adult ; Bacteria/classification ; Bacteria/genetics ; Cervix Mucus/microbiology ; Corynebacterium/genetics ; Corynebacterium/isolation & purification ; Endometriosis/microbiology ; Enterobacteriaceae/genetics ; Enterobacteriaceae/isolation & purification ; Female ; Flavobacterium/genetics ; Flavobacterium/isolation & purification ; Gentian Violet ; High-Throughput Nucleotide Sequencing ; Humans ; Lactobacillus/genetics ; Lactobacillus/isolation & purification ; Microbiota/genetics ; Phenazines ; Pseudomonas/genetics ; Pseudomonas/isolation & purification ; RNA, Ribosomal, 16S/genetics ; Real-Time Polymerase Chain Reaction ; Streptococcus/genetics ; Streptococcus/isolation & purification ; Young Adult
    Chemical Substances Gram's stain ; Phenazines ; RNA, Ribosomal, 16S ; Gentian Violet (J4Z741D6O5)
    Language English
    Publishing date 2019-05-24
    Publishing country Denmark
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 604542-x
    ISSN 1600-0897 ; 0271-7352 ; 8755-8920 ; 1046-7408
    ISSN (online) 1600-0897
    ISSN 0271-7352 ; 8755-8920 ; 1046-7408
    DOI 10.1111/aji.13147
    Database MEDical Literature Analysis and Retrieval System OnLINE

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