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  1. Article: First report of

    Duarte, Brian Patrick / Abbasi, Mehrdad / Hamelin, Richard

    Plant disease

    2024  

    Abstract: Saskatoon serviceberry (Amelanchier alnifolia) is a tall shrub native to the western regions of North America. In British Columbia, serviceberries are a resource for Indigenous communities, used in cooking and for medicinal purposes (Turner et al. 1990). ...

    Abstract Saskatoon serviceberry (Amelanchier alnifolia) is a tall shrub native to the western regions of North America. In British Columbia, serviceberries are a resource for Indigenous communities, used in cooking and for medicinal purposes (Turner et al. 1990). The Saskatoon serviceberry is popular for ornamental and food purposes, with increasing demand for commercial production in British Columbia. (FLNR, 2003). In June 2023 leaf and fruit samples displaying signs of a rust fungus were collected from three ornamental Saskatoon serviceberry shrubs on the University of British Columbia's campus in Vancouver, BC (49°15'35.0"N 123°15'05.6"W). Morphological characteristics were taken from six leaves and berries. Infected leaf tissue was misshapen due to the development of aecia on the abaxial side of the leaves. Approximately 80% of the berries were enveloped in aecia, while infected leaf tissue constituted only around 5% across all three shrubs. Aecia were aecidioid (aecidium type) 0.25 to 0.35mm in diameter, hypophylous and, fructicolous. Peridial cells had a rhomboid shape measuring 21-29 × 18-23 μm (average dimension 25 × 20 μm, n = 30). Aeciospores were globoid with yellowish walls, verrucose and the dimensions ranged from 16-24 × 12-15 μm, (average dimensions 19 ×15 μm, n = 30) (Fig. x). These morphological features fit well with description of Gymnotelium blasdaleanum (Dietel & Holw.) Arthur (= Gymnosporangium libocedri (Henn.) F. Kern) (Arthur 1934). Judging from U.S. National Fungal Databases (https://fungi.ars.usda.gov/) G. blasdaleanum has never been reported in Canada, thus this discovery represents the first report of G. blasdaleanum in the country, specifically in the province of British Columbia. G. blasdaleanum is a hetero-demicyclic rust fungus with a broad aecial host range which includes several Rosaceous genera such as Amelanchier, Crataegus, Cydonia, Malus, Pyrus, and Sorbus (Farr & Rossman 2019). The telial host range is limited to California incense cedar (Calocedrus decurrens) and was not observed on nearby trees, some located within one kilometer of the serviceberries. To confirm morphological identification, DNA was extracted from infected leaves and fruits from all three plants using a modified protocol (Russell et al., 2010). The D1/D2 region was amplified using primers LR6 and 2Rust1R (Beenken, et al., 2012). A BLASTn search of all three sequences revealed 99.52 to 99.62% identity to available sequence in GenBank from Gymnotelium blasdaleanum (AF522168). Newly generated sequences were submitted to the GenBank under accession numbers OR567878, OR568568, and OR654105. Specimens from three Saskatoon serviceberry plants were provided to the UBC herbarium (Beaty Biodiversity Museum) and deposited in their fungarium (F35820). Infected fruits undergo deformation and premature dropping, posing a significant threat to ornamental and fruit production varieties of serviceberries (EPPO, 2006). The spread and establishment of the G. blasdaleanum is highly dependent on the presence of C. decurrens because of its limited range. However, California incense cedar is planted outside its natural range in suitable environments for G. blasdaleanum to thrive such as southern BC allowing the rust pathogen to spread to Canada. To prevent potential spread into other agricultural industries, particularly the 256-acre pear cultivation, continued planting of C. decurrens in British Columbia should be closely monitored. (BC MFLNRO, 2003).
    Language English
    Publishing date 2024-01-19
    Publishing country United States
    Document type Journal Article
    ZDB-ID 754182-x
    ISSN 0191-2917
    ISSN 0191-2917
    DOI 10.1094/PDIS-12-23-2689-PDN
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: DNA-Barcoding Identification of Plant Pathogens for Disease Diagnostics.

    Feau, Nicolas / Herath, Padmini / Hamelin, Richard C

    Methods in molecular biology (Clifton, N.J.)

    2023  Volume 2659, Page(s) 37–49

    Abstract: The accurate identification of plant pathogens is a critical step to prevent their spread and attenuate their impact. Among the wide range of methods available, DNA-barcoding, i.e., the identification of an organism through the PCR amplification and ... ...

    Abstract The accurate identification of plant pathogens is a critical step to prevent their spread and attenuate their impact. Among the wide range of methods available, DNA-barcoding, i.e., the identification of an organism through the PCR amplification and sequencing of a single locus, remains one of the most straightforward and accurate plant-pathogen identification techniques that can be used in a generic molecular biology lab. This chapter provides a detailed protocol for the isolation of genomic DNA of fungal and oomycete pathogens from fresh field samples and the amplification and sequencing of the internal transcribed spacer (ITS) locus for DNA-barcoding purpose. Amendments to the protocol are provided to help in resolving issues related to the analysis of complicated samples and to the lack of species resolution that can be encountered with ITS barcodes.
    MeSH term(s) DNA Barcoding, Taxonomic/methods ; DNA ; Oomycetes/genetics ; Sequence Analysis, DNA ; Plants/genetics ; DNA, Plant/genetics
    Chemical Substances DNA (9007-49-2) ; DNA, Plant
    Language English
    Publishing date 2023-05-30
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 1940-6029
    ISSN (online) 1940-6029
    DOI 10.1007/978-1-0716-3159-1_3
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Genome sequences of three genetic lineages of the fungus

    Feau, Nicolas / Tanney, Joey B / Herath, Padmini / Leal, Isabel / Hamelin, Richard C

    Microbiology resource announcements

    2024  Volume 13, Issue 2, Page(s) e0100823

    Abstract: Here, we present the nearly complete genome sequences of the three main genetic lineages ... ...

    Abstract Here, we present the nearly complete genome sequences of the three main genetic lineages of
    Language English
    Publishing date 2024-01-24
    Publishing country United States
    Document type Journal Article
    ISSN 2576-098X
    ISSN (online) 2576-098X
    DOI 10.1128/mra.01008-23
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Filamentous fungal associates of the alder bark beetle, Alniphagus aspericollis, including an undescribed species of Neonectria.

    Lee, Gervais Y S / Wertman, Debra L / Carroll, Allan L / Hamelin, Richard C

    PloS one

    2023  Volume 18, Issue 5, Page(s) e0284393

    Abstract: Bark beetles (Coleoptera: Curculionidae; Scolytinae) are tree-infesting insects that consume subcortical tissues and fungi. Species capable of killing their host trees are most commonly associated with conifers, as very few bark beetle species infest and ...

    Abstract Bark beetles (Coleoptera: Curculionidae; Scolytinae) are tree-infesting insects that consume subcortical tissues and fungi. Species capable of killing their host trees are most commonly associated with conifers, as very few bark beetle species infest and kill hardwood hosts directly. The alder bark beetle, Alniphagus aspericollis, is a hardwood-killing bark beetle that colonizes and kills red alder, Alnus rubra. Conifer-killing bark beetles have well-known associations with symbiotic ophiostomatoid fungi that facilitate their life histories, but it is unknown whether A. aspericollis has any fungal associates. This study was conducted to identify any consistent filamentous fungal associates of A. aspericollis and characterize the consistency of observed beetle-fungus relationships. Beetles and gallery phloem samples were collected from seven sites throughout the Greater Vancouver region in British Columbia, Canada. Filamentous fungi were isolated from these samples and identified by DNA barcoding using the internal transcribed spacer (ITS) region and other barcode regions for resolution to the species-level for the most dominant isolates. The most common fungal associate was a previously undescribed Neonectria major-like fungus, Neonectria sp. nov., which was isolated from ~67% of adult beetles, ~59% of phloem samples, and ~94% of the beetle-infested trees. Ophiostoma quercus was isolated from ~28% of adult beetles, ~9% of phloem samples, and ~56% of infested trees and deemed a casual associate of A. aspericollis, while a putatively novel species of Ophiostoma was more infrequently isolated from A. aspericollis and its galleries. Cadophora spadicis, a new record for red alder, was rarely isolated and is probably coincidentally carried by A. aspericollis. Overall, A. aspericollis was only loosely associated with ophiostomatoid fungi, suggesting that these fungi have little ecological significance in the beetle-tree interaction, while Neonectria sp. nov. may be a symbiote of A. aspericollis that is vectored by the beetle.
    MeSH term(s) Animals ; Coleoptera ; Weevils/microbiology ; Alnus ; Plant Bark/microbiology ; Hypocreales ; Tracheophyta ; British Columbia
    Language English
    Publishing date 2023-05-08
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2267670-3
    ISSN 1932-6203 ; 1932-6203
    ISSN (online) 1932-6203
    ISSN 1932-6203
    DOI 10.1371/journal.pone.0284393
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Transcriptional profile of oil palm pathogen, Ganoderma boninense, reveals activation of lignin degradation machinery and possible evasion of host immune response.

    Dhillon, Braham / Hamelin, Richard C / Rollins, Jeffrey A

    BMC genomics

    2021  Volume 22, Issue 1, Page(s) 326

    Abstract: Background: The white-rot fungi in the genus Ganoderma interact with both living and dead angiosperm tree hosts. Two Ganoderma species, a North American taxon, G. zonatum and an Asian taxon, G. boninense, have primarily been found associated with live ... ...

    Abstract Background: The white-rot fungi in the genus Ganoderma interact with both living and dead angiosperm tree hosts. Two Ganoderma species, a North American taxon, G. zonatum and an Asian taxon, G. boninense, have primarily been found associated with live palm hosts. During the host plant colonization process, a massive transcriptional reorganization helps the fungus evade the host immune response and utilize plant cell wall polysaccharides.
    Results: A publicly available transcriptome of G. boninense - oil palm interaction was surveyed to profile transcripts that were differentially expressed in planta. Ten percent of the G. boninense transcript loci had altered expression as it colonized oil palm plants one-month post inoculation. Carbohydrate active enzymes (CAZymes), particularly those with a role in lignin degradation, and auxiliary enzymes that facilitate lignin modification, like cytochrome P450s and haloacid dehalogenases, were up-regulated in planta. Several lineage specific proteins and secreted proteins that lack known functional domains were also up-regulated in planta, but their role in the interaction could not be established. A slowdown in G. boninense respiration during the interaction can be inferred from the down-regulation of proteins involved in electron transport chain and mitochondrial biogenesis. Additionally, pathogenicity related genes and chitin degradation machinery were down-regulated during the interaction indicating G. boninense may be evading detection by the host immune system.
    Conclusions: This analysis offers an overview of the dynamic processes at play in G. boninense - oil palm interaction and provides a framework to investigate biology of Ganoderma fungi across plantations and landscape.
    MeSH term(s) Arecaceae/genetics ; Ganoderma/genetics ; Immunity ; Lignin ; Palm Oil ; Plant Diseases/genetics
    Chemical Substances Palm Oil (5QUO05548Z) ; Lignin (9005-53-2)
    Language English
    Publishing date 2021-05-05
    Publishing country England
    Document type Journal Article
    ISSN 1471-2164
    ISSN (online) 1471-2164
    DOI 10.1186/s12864-021-07644-9
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Genomic biosurveillance of forest invasive alien enemies: A story written in code.

    Hamelin, Richard C / Roe, Amanda D

    Evolutionary applications

    2019  Volume 13, Issue 1, Page(s) 95–115

    Abstract: The world's forests face unprecedented threats from invasive insects and pathogens that can cause large irreversible damage to the ecosystems. This threatens the world's capacity to provide long-term fiber supply and ecosystem services that range from ... ...

    Abstract The world's forests face unprecedented threats from invasive insects and pathogens that can cause large irreversible damage to the ecosystems. This threatens the world's capacity to provide long-term fiber supply and ecosystem services that range from carbon storage, nutrient cycling, and water and air purification, to soil preservation and maintenance of wildlife habitat. Reducing the threat of forest invasive alien species requires vigilant biosurveillance, the process of gathering, integrating, interpreting, and communicating essential information about pest and pathogen threats to achieve early detection and warning and to enable better decision-making. This process is challenging due to the diversity of invasive pests and pathogens that need to be identified, the diverse pathways of introduction, and the difficulty in assessing the risk of establishment. Genomics can provide powerful new solutions to biosurveillance. The process of invasion is a story written in four chapters: transport, introduction, establishment, and spread. The series of processes that lead to a successful invasion can leave behind a DNA signature that tells the story of an invasion. This signature can help us understand the dynamic, multistep process of invasion and inform management of current and future introductions. This review describes current and future application of genomic tools and pipelines that will provide accurate identification of pests and pathogens, assign outbreak or survey samples to putative sources to identify pathways of spread, and assess risk based on traits that impact the outbreak outcome.
    Language English
    Publishing date 2019-09-10
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 2405496-3
    ISSN 1752-4563 ; 1752-4571
    ISSN (online) 1752-4563
    ISSN 1752-4571
    DOI 10.1111/eva.12853
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: Range-wide population genomics of the spongy moth,

    Picq, Sandrine / Wu, Yunke / Martemyanov, Vyacheslav V / Pouliot, Esther / Pfister, Scott E / Hamelin, Richard / Cusson, Michel

    Evolutionary applications

    2023  Volume 16, Issue 3, Page(s) 638–656

    Abstract: The spongy moth, ...

    Abstract The spongy moth,
    Language English
    Publishing date 2023-01-13
    Publishing country England
    Document type Journal Article
    ZDB-ID 2405496-3
    ISSN 1752-4563 ; 1752-4571
    ISSN (online) 1752-4563
    ISSN 1752-4571
    DOI 10.1111/eva.13522
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article: Occurrence of Ascospores and White Mold Caused by

    Reich, Jonathan / McLaren, Debra / Kim, Yong Min / Wally, Owen / Yevtushenko, Dmytro / Hamelin, Richard / Balasubramanian, Parthiba / Chatterton, Syama

    Plant disease

    2023  Volume 107, Issue 12, Page(s) 3754–3762

    Abstract: White mold caused by the fungal ... ...

    Abstract White mold caused by the fungal pathogen
    MeSH term(s) Alberta ; Fungicides, Industrial/pharmacology ; Ascomycota/genetics ; Phaseolus/microbiology ; Spores, Fungal
    Chemical Substances Fungicides, Industrial
    Language English
    Publishing date 2023-12-06
    Publishing country United States
    Document type Journal Article
    ZDB-ID 754182-x
    ISSN 0191-2917
    ISSN 0191-2917
    DOI 10.1094/PDIS-11-22-2529-RE
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: CRISPR/Cas9 Gene Editing: An Unexplored Frontier for Forest Pathology.

    Dort, Erika N / Tanguay, Philippe / Hamelin, Richard C

    Frontiers in plant science

    2020  Volume 11, Page(s) 1126

    Abstract: CRISPR/Cas9 gene editing technology has taken the scientific community by storm since its development in 2012. First discovered in 1987, CRISPR/Cas systems act as an adaptive immune response in archaea and bacteria that defends against invading ... ...

    Abstract CRISPR/Cas9 gene editing technology has taken the scientific community by storm since its development in 2012. First discovered in 1987, CRISPR/Cas systems act as an adaptive immune response in archaea and bacteria that defends against invading bacteriophages and plasmids. CRISPR/Cas9 gene editing technology modifies this immune response to function in eukaryotic cells as a highly specific, RNA-guided complex that can edit almost any genetic target. This technology has applications in all biological fields, including plant pathology. However, examples of its use in forest pathology are essentially nonexistent. The aim of this review is to give researchers a deeper understanding of the native CRISPR/Cas systems and how they were adapted into the CRISPR/Cas9 technology used today in plant pathology-this information is crucial for researchers aiming to use this technology in the pathosystems they study. We review the current applications of CRISPR/Cas9 in plant pathology and propose future directions for research in forest pathosystems where this technology is currently underutilized.
    Language English
    Publishing date 2020-07-22
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2613694-6
    ISSN 1664-462X
    ISSN 1664-462X
    DOI 10.3389/fpls.2020.01126
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: First report of Melampsora epitea causing stem cankers on Salix pentandra in Alberta, Canada

    Tod D. Ramsfield / Nicolas Feau / Philippe Tanguay / Richard C. Hamelin / Padmini Herath / Toso Bozic

    Frontiers in Forests and Global Change, Vol

    2023  Volume 6

    Abstract: In June, 2021, laurel willow (Salix pentandra) near Slave Lake, Alberta, was found to be infected by a Melampsora sp. that produced bright yellow urediniospores in uredia that were present on catkins, leaves, and stems. All Melampsora species previously ... ...

    Abstract In June, 2021, laurel willow (Salix pentandra) near Slave Lake, Alberta, was found to be infected by a Melampsora sp. that produced bright yellow urediniospores in uredia that were present on catkins, leaves, and stems. All Melampsora species previously reported in Canada are recorded as infecting leaves; therefore, further investigation was undertaken to ascertain the identity of this pathogen. To assess the relationship between this specimen and other Melampsora spp. previously collected from Canada, samples of willow leaves infected by Melampsora spp. were sourced from mycological herbariums located at the Laurentian Forestry Centre (QFB) and the Northern Forestry Centre (CFB, WINF(M)). DNA sequence data from the internal transcribed spacer (ITS) ribosomal RNA region of the fresh specimen, herbarium specimens, and DNA sequence data deposited within GenBank, were used to conduct a phylogenetic analysis. Sequencing and BLAST analysis of the material from the sample resulted in a 99.3% sequence identity match to Melampsora epitea “Mel J” collected from Larix laricina in New York State. The ITS sequence from the herbarium sample WINF(M)7356 (described as M. abieti-capraearum from Manitoba) had 100.0% identity with the Alberta sample. Additionally, specimens WINF(M)11892 (Melampsora sp. from Manitoba) and CFB8931 (Melampsora sp. from the Yukon) had 99.0% sequence identity with the Alberta sample. From these results we applied the identity of M. epitea to the rust discovered in Slave Lake, AB. With the current emphasis on willows for bioenergy production in Canada, growers must remain vigilant for this pathogen and the damages it could cause to willow plantations.
    Keywords Melampsora ; Salix ; rust disease ; willow health ; canker ; Forestry ; SD1-669.5 ; Environmental sciences ; GE1-350
    Language English
    Publishing date 2023-06-01T00:00:00Z
    Publisher Frontiers Media S.A.
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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