LIVIVO - The Search Portal for Life Sciences

zur deutschen Oberfläche wechseln
Advanced search

Search results

Result 1 - 10 of total 13

Search options

  1. Article ; Online: Analysis of a Deep Learning Model for 12-Lead ECG Classification Reveals Learned Features Similar to Diagnostic Criteria.

    Bender, Theresa / Beinecke, Jacqueline M / Krefting, Dagmar / Muller, Carolin / Dathe, Henning / Seidler, Tim / Spicher, Nicolai / Hauschild, Anne-Christin

    IEEE journal of biomedical and health informatics

    2023  Volume PP

    Abstract: Despite their remarkable performance, deep neural networks remain unadopted in clinical practice, which is considered to be partially due to their lack of explainability. In this work, we apply explainable attribution methods to a pre-trained deep neural ...

    Abstract Despite their remarkable performance, deep neural networks remain unadopted in clinical practice, which is considered to be partially due to their lack of explainability. In this work, we apply explainable attribution methods to a pre-trained deep neural network for abnormality classification in 12-lead electrocardiography to open this "black box" and understand the relationship between model prediction and learned features. We classify data from two public databases (CPSC 2018, PTB-XL) and the attribution methods assign a "relevance score" to each sample of the classified signals. This allows analyzing what the network learned during training, for which we propose quantitative methods: average relevance scores over a) classes, b) leads, and c) average beats. The analyses of relevance scores for atrial fibrillation and left bundle branch block compared to healthy controls show that their mean values a) increase with higher classification probability and correspond to false classifications when around zero, and b) correspond to clinical recommendations regarding which lead to consider. Furthermore, c) visible P-waves and concordant T-waves result in clearly negative relevance scores in atrial fibrillation and left bundle branch block classification, respectively. Results are similar across both databases despite differences in study population and hardware. In summary, our analysis suggests that the DNN learned features similar to cardiology textbook knowledge.
    Language English
    Publishing date 2023-05-01
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2695320-1
    ISSN 2168-2208 ; 2168-2194
    ISSN (online) 2168-2208
    ISSN 2168-2194
    DOI 10.1109/JBHI.2023.3271858
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  2. Book ; Online ; Thesis: Vermittlerrolle von Annexin A2 bei der apikalen Translokation des renalen Natrium-Kalium-Chlorid-Kotransporters Typ 2

    Dathe, Dorothea Christin [Verfasser]

    2014  

    Author's details Dorothea Christin Dathe
    Keywords Medizin, Gesundheit ; Medicine, Health
    Subject code sg610
    Language German
    Publisher Freie Universität Berlin
    Publishing place Berlin
    Document type Book ; Online ; Thesis
    Database Digital theses on the web

    More links

    Kategorien

  3. Book ; Online: Analysis of a Deep Learning Model for 12-Lead ECG Classification Reveals Learned Features Similar to Diagnostic Criteria

    Bender, Theresa / Beinecke, Jacqueline Michelle / Krefting, Dagmar / Müller, Carolin / Dathe, Henning / Seidler, Tim / Spicher, Nicolai / Hauschild, Anne-Christin

    2022  

    Abstract: Despite their remarkable performance, deep neural networks remain unadopted in clinical practice, which is considered to be partially due to their lack in explainability. In this work, we apply attribution methods to a pre-trained deep neural network ( ... ...

    Abstract Despite their remarkable performance, deep neural networks remain unadopted in clinical practice, which is considered to be partially due to their lack in explainability. In this work, we apply attribution methods to a pre-trained deep neural network (DNN) for 12-lead electrocardiography classification to open this "black box" and understand the relationship between model prediction and learned features. We classify data from a public data set and the attribution methods assign a "relevance score" to each sample of the classified signals. This allows analyzing what the network learned during training, for which we propose quantitative methods: average relevance scores over a) classes, b) leads, and c) average beats. The analyses of relevance scores for atrial fibrillation (AF) and left bundle branch block (LBBB) compared to healthy controls show that their mean values a) increase with higher classification probability and correspond to false classifications when around zero, and b) correspond to clinical recommendations regarding which lead to consider. Furthermore, c) visible P-waves and concordant T-waves result in clearly negative relevance scores in AF and LBBB classification, respectively. In summary, our analysis suggests that the DNN learned features similar to cardiology textbook knowledge.

    Comment: Accepted version including new experiments on additional database
    Keywords Electrical Engineering and Systems Science - Signal Processing ; Computer Science - Machine Learning
    Publishing date 2022-11-03
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

    More links

    Kategorien

  4. Conference proceedings: Barriers for using embryotox.de in healthcare practice: Results from qualitative semi-structured interviews of patients and medical doctors

    Müller, Anne / Metke, Franziska / Breuning, Martina / Holmberg, Christine / Schaefer, Christof / Onken, Marlies / Dathe, Katarina

    2023  , Page(s) 23dkvf110

    Event/congress 22. Deutscher Kongress für Versorgungsforschung (DKVF); Berlin; Deutsches Netzwerk Versorgungsforschung; 2023
    Keywords Medizin, Gesundheit
    Publishing date 2023-10-02
    Publisher German Medical Science GMS Publishing House; Düsseldorf
    Document type Conference proceedings
    DOI 10.3205/23dkvf110
    Database German Medical Science

    More links

    Kategorien

  5. Article ; Online: Annexin A2 mediates apical trafficking of renal Na⁺-K⁺-2Cl⁻ cotransporter.

    Dathe, Christin / Daigeler, Anna-Lena / Seifert, Wenke / Jankowski, Vera / Mrowka, Ralf / Kalis, Ronny / Wanker, Erich / Mutig, Kerim / Bachmann, Sebastian / Paliege, Alexander

    The Journal of biological chemistry

    2014  Volume 289, Issue 14, Page(s) 9983–9997

    Abstract: The furosemide-sensitive Na(+)-K(+)-2Cl(-) cotransporter (NKCC2) is responsible for urine concentration and helps maintain systemic salt homeostasis. Its activity depends on trafficking to, and insertion into, the apical membrane, as well as on ... ...

    Abstract The furosemide-sensitive Na(+)-K(+)-2Cl(-) cotransporter (NKCC2) is responsible for urine concentration and helps maintain systemic salt homeostasis. Its activity depends on trafficking to, and insertion into, the apical membrane, as well as on phosphorylation of conserved N-terminal serine and threonine residues. Vasopressin (AVP) signaling via PKA and other kinases activates NKCC2. Association of NKCC2 with lipid rafts facilitates its AVP-induced apical translocation and activation at the surface. Lipid raft microdomains typically serve as platforms for membrane proteins to facilitate their interactions with other proteins, but little is known about partners that interact with NKCC2. Yeast two-hybrid screening identified an interaction between NKCC2 and the cytosolic protein, annexin A2 (AnxA2). Annexins mediate lipid raft-dependent trafficking of transmembrane proteins, including the AVP-regulated water channel, aquaporin 2. Here, we demonstrate that AnxA2, which binds to phospholipids in a Ca(2+)-dependent manner and may organize microdomains, is codistributed with NKCC2 to promote its apical translocation in response to AVP stimulation and low chloride hypotonic stress. NKCC2 and AnxA2 interact in a phosphorylation-dependent manner. Phosphomimetic AnxA2 carrying a mutant phosphoacceptor (AnxA2-Y24D-GFP) enhanced surface expression and raft association of NKCC2 by 5-fold upon low chloride hypotonic stimulation, whereas AnxA2-Y24A-GFP and PKC-dependent AnxA2-S26D-GFP did not. As the AnxA2 effect involved only nonphosphorylated NKCC2, it appears to affect NKCC2 trafficking. Overexpression or knockdown experiments further supported the role of AnxA2 in the apical translocation and surface expression of NKCC2. In summary, this study identifies AnxA2 as a lipid raft-associated trafficking factor for NKCC2 and provides mechanistic insight into the regulation of this essential cotransporter.
    MeSH term(s) Amino Acid Substitution ; Animals ; Annexin A2/genetics ; Annexin A2/metabolism ; Antidiuretic Agents/pharmacology ; HEK293 Cells ; Humans ; Macaca mulatta ; Male ; Membrane Microdomains/genetics ; Membrane Microdomains/metabolism ; Mutation, Missense ; Phosphorylation/drug effects ; Phosphorylation/genetics ; Protein Transport/drug effects ; Protein Transport/genetics ; Rats ; Rats, Sprague-Dawley ; Solute Carrier Family 12, Member 1/genetics ; Solute Carrier Family 12, Member 1/metabolism ; Vasopressins/pharmacology
    Chemical Substances Annexin A2 ; Antidiuretic Agents ; Slc12a1 protein, rat ; Solute Carrier Family 12, Member 1 ; Vasopressins (11000-17-2)
    Language English
    Publishing date 2014-02-13
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2997-x
    ISSN 1083-351X ; 0021-9258
    ISSN (online) 1083-351X
    ISSN 0021-9258
    DOI 10.1074/jbc.M113.540948
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  6. Article ; Online: SPAK differentially mediates vasopressin effects on sodium cotransporters.

    Saritas, Turgay / Borschewski, Aljona / McCormick, James A / Paliege, Alexander / Dathe, Christin / Uchida, Shinichi / Terker, Andrew / Himmerkus, Nina / Bleich, Markus / Demaretz, Sylvie / Laghmani, Kamel / Delpire, Eric / Ellison, David H / Bachmann, Sebastian / Mutig, Kerim

    Journal of the American Society of Nephrology : JASN

    2013  Volume 24, Issue 3, Page(s) 407–418

    Abstract: Activation of the Na(+)-K(+)-2Cl(-)-cotransporter (NKCC2) and the Na(+)-Cl(-)-cotransporter (NCC) by vasopressin includes their phosphorylation at defined, conserved N-terminal threonine and serine residues, but the kinase pathways that mediate this ... ...

    Abstract Activation of the Na(+)-K(+)-2Cl(-)-cotransporter (NKCC2) and the Na(+)-Cl(-)-cotransporter (NCC) by vasopressin includes their phosphorylation at defined, conserved N-terminal threonine and serine residues, but the kinase pathways that mediate this action of vasopressin are not well understood. Two homologous Ste20-like kinases, SPS-related proline/alanine-rich kinase (SPAK) and oxidative stress responsive kinase (OSR1), can phosphorylate the cotransporters directly. In this process, a full-length SPAK variant and OSR1 interact with a truncated SPAK variant, which has inhibitory effects. Here, we tested whether SPAK is an essential component of the vasopressin stimulatory pathway. We administered desmopressin, a V2 receptor-specific agonist, to wild-type mice, SPAK-deficient mice, and vasopressin-deficient rats. Desmopressin induced regulatory changes in SPAK variants, but not in OSR1 to the same degree, and activated NKCC2 and NCC. Furthermore, desmopressin modulated both the full-length and truncated SPAK variants to interact with and phosphorylate NKCC2, whereas only full-length SPAK promoted the activation of NCC. In summary, these results suggest that SPAK mediates the effect of vasopressin on sodium reabsorption along the distal nephron.
    MeSH term(s) Animals ; Deamino Arginine Vasopressin/pharmacology ; Enzyme Activation/drug effects ; Kidney/drug effects ; Kidney/metabolism ; Male ; Mice ; Mice, Knockout ; Phosphorylation ; Protein Kinases/metabolism ; Protein-Serine-Threonine Kinases/deficiency ; Protein-Serine-Threonine Kinases/genetics ; Protein-Serine-Threonine Kinases/metabolism ; Rats ; Rats, Brattleboro ; Receptors, Vasopressin/agonists ; Sodium Chloride Symporters/metabolism ; Sodium-Potassium-Chloride Symporters/metabolism ; Solute Carrier Family 12, Member 1
    Chemical Substances Receptors, Vasopressin ; Slc12a1 protein, mouse ; Slc12a1 protein, rat ; Sodium Chloride Symporters ; Sodium-Potassium-Chloride Symporters ; Solute Carrier Family 12, Member 1 ; Protein Kinases (EC 2.7.-) ; Stk39 protein, mouse (EC 2.7.1.-) ; PAS domain kinases (EC 2.7.1.11) ; OXSR1 protein, mouse (EC 2.7.11.1) ; Oxsr1 protein, rat (EC 2.7.11.1) ; Protein-Serine-Threonine Kinases (EC 2.7.11.1) ; Deamino Arginine Vasopressin (ENR1LLB0FP)
    Language English
    Publishing date 2013-02-07
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 1085942-1
    ISSN 1533-3450 ; 1046-6673
    ISSN (online) 1533-3450
    ISSN 1046-6673
    DOI 10.1681/ASN.2012040404
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  7. Article: Karaya – eine Alternative zur Behandlung chronischer Obstipation: Ergebnisse einer ; -Studie zum Quellungsverhalten

    Oberthür, Christine / Dathe, Britta / Dura, Johanna / Wolff, Armin

    Schweizerische Zeitschrift für Ganzheitsmedizin / Swiss Journal of Integrative Medicine

    2010  Volume 19, Issue 1, Page(s) 36–41

    Abstract: Hintergrund: Die Obstipation zÄhlt zu den hÄufigsten EntleerungsstÖrungen des Darmes, unter der ca. 12% der BevÖlkerung leidet. Zur Behandlung der chronischen Obstipation stehen diverse Substanzen zur VerfÜgung, deren laxierender Effekt auf ... ...

    Institution Vifor AG, Zweigniederlassung Medichemie Ettingen, CH-Ettingen Hochschule Albstadt-Sigmaringen, DE-Sigmaringen
    Abstract Hintergrund: Die Obstipation zÄhlt zu den hÄufigsten EntleerungsstÖrungen des Darmes, unter der ca. 12% der BevÖlkerung leidet. Zur Behandlung der chronischen Obstipation stehen diverse Substanzen zur VerfÜgung, deren laxierender Effekt auf unterschiedlichen Wirkweisen beruht. Die Akzeptanz von Mitteln pflanzlicher Herkunft in der BevÖlkerung ist auch bei den pflanzlichen Laxantien zu beobachten. Bei den quellbaren Stoffen werden hÄufig Leinsamen, Flohsamen und Indischer Flohsamen eingesetzt. Der Quellstoff Karaya, ein Polysaccharidgemisch, ist dagegen als quellendes Laxans noch recht unbekannt. Studienziel: In einer In-vitro-Studie wurde das Quellverhalten ausgesuchter Samendrogen im Vergleich zu Karaya sowie der Einfluss verschiedener Parameter auf die Quellung untersucht. Methoden: Die QuellfÄhigkeit der untersuchten Samendrogen und Karaya wurde in verschiedenen Medien (Wasser, isotonische KochsalzlÖsung), Volumina (25 bzw. 500 ml), pH Werten (1, 2, 4 und 8) und ZeitrÄumen (4 bzw. 24 Stunden) nach der EuropÄischen PharmakopÖe bzw. angepassten Methoden untersucht. Ergebnisse: Die QuellfÄhigkeit von Karaya ist den anderen Samendrogen deutlich Überlegen. Im Zeitraum von 24 Stunden konnten fÜr Karaya bis zu 17-fach hÖhere Quellvolumina gemessen werden. Die Quellung ist pH-Wert-abhÄngig, sie wird bei steigendem pH Wert begÜnstigt und hÄlt Über 24 Stunden an. Die Quellung der Samendrogen ist gering und innerhalb von 2 Stunden abgeschlossen. Gequollenes Karaya ist gelartig und zeigt scherverdÜnnende Eigenschaften. Schlussfolgerungen: Eine Behandlung der chronischen Obstipation mit Karaya stellt eine Alternative zu den Üblicherweise eingesetzten pflanzlichen Quellstoffen dar.
    Keywords <italic>Sterculia urens Roxb.</italic> ; Obstipation ; Quellstoffe ; Gummi Karaya
    Language German
    Publishing date 2010-02-09
    Publisher S. Karger GmbH
    Publishing place Freiburg, Germany
    Document type Article
    Note Originalarbeit / Original Article
    ZDB-ID 1472244-6
    ISSN 1663-7607 ; 1015-0684
    ISSN (online) 1663-7607
    ISSN 1015-0684
    DOI 10.1159/000283643
    Database Karger publisher's database

    More links

    Kategorien

  8. Article: Karaya - eine Alternative zur Behandlung chronischer Obstipation: Ergebnisse einer In-vitro-Studie zum Quellungsverhalten. Karaya - An Alternative for Treating Chronic Constipation: Results of an In vftro Study on Swelling Chracteristics of Medications

    Wolff, Armin / Oberthür, Christine / Dathe, Britta / Dura, Johanna

    Schweizerische Zeitschrift für Ganzheitsmedizin

    2007  Volume 19, Issue 1, Page(s) 36

    Language German
    Document type Article
    ZDB-ID 1472244-6
    ISSN 1015-0684
    Database Current Contents Medicine

    More links

    Kategorien

  9. Book: Bildung der Persönlichkeit

    Lieberknecht, Christine / Dathe, Uwe / Gemper, Bodo B / Klein, Franz-Josef / Mues, Steffen / Schlösser, Jürgen / Tromsdorf, Kristine

    Plädoyer für den kooperativen Föderalismus als Wettbewerbsföderalismus

    (Reihe: Wirtschafts- und Sozialordnung ; Band 8)

    2013  

    Author's details Prof. Dr. Dr. Bodo Gemper (Hrsg.) : Mit Beiträgen von Christine Lieberknecht (Ministerpräsidentin des Freistaates Thüringen), Studiendirektorin Kristine Tromsdorf und Schülerinnen und Schülern des Johanneum-Gymnasiums zu Herborn, Steffen Mues (Bürgermeister der Universitätsstadt Siegen), Prof. Dr. phil. Franz-Josef Klein (Prorektor der Universität Siegen) und Prof. Dr. rer. pol. DCom. Bodo Gemper, ergänzt um Beiträge von Prof. Dr. rer. pol. Hans Jürgen Schlösser (Universität Siegen) und Dr. phil. Uwe Dathe (Jena)
    Series title Reihe: Wirtschafts- und Sozialordnung ; Band 8
    Language German
    Size XIV, 76 Seiten, Illustrationen
    Edition 1. Auflage
    Publisher Edition Ensis
    Publishing place Netphen
    Document type Book
    Note Enthält 11 Beiträge
    ISBN 9783981363609 ; 9783981363616 ; 3981363604 ; 3981363612
    Database ECONomics Information System

    More links

    Kategorien

  10. Article ; Online: Twenty-three unsolved problems in hydrology (UPH) ? a community perspective

    G?nter?Bl?schl / Marc F.P.?Bierkens / Antonio?Chambel / Christophe?Cudennec / Georgia?Destouni / Aldo?Fiori / James W.?Kirchner / Jeffrey J.?McDonnell / Hubert H.G.?Savenije / Murugesu?Sivapalan / Christine?Stumpp / Elena?Toth / Elena?Volpi / Gemma?Carr / Claire?Lupton / Jos??Salinas / Borb?la?Sz?les / Alberto?Viglione / Hafzullah?Aksoy /
    Scott T.?Allen / Anam?Amin / Vazken?Andr?assian / Berit?Arheimer / Santosh K.?Aryal / Victor?Baker / Earl?Bardsley / Marlies H.?Barendrecht / Alena?Bartosova / Okke?Batelaan / Wouter R.?Berghuijs / Keith?Beven / Theresa?Blume / Thom?Bogaard / Pablo?Borges de Amorim / Michael E.?B?ttcher / Gilles?Boulet / Korbinian?Breinl / Mitja?Brilly / Luca?Brocca / Wouter?Buytaert / Attilio?Castellarin / Andrea?Castelletti / Xiaohong?Chen / Yangbo?Chen / Yuanfang?Chen / Peter?Chifflard / Pierluigi?Claps / Martyn P.?Clark / Adrian L.?Collins / Barry?Croke / Annette?Dathe / Paula C.?David / Felipe P. J.?de Barros / Gerrit?de Rooij / Giuliano?Di Baldassarre / Jessica M.?Driscoll / Doris?Duethmann / Ravindra?Dwivedi / Ebru?Eris / William H.?Farmer / James?Feiccabrino / Grant?Ferguson / Ennio?Ferrari / Stefano?Ferraris / Benjamin?Fersch / David?Finger / Laura?Foglia / Keirnan?Fowler / Boris?Gartsman / Simon?Gascoin / Eric?Gaume / Alexander?Gelfan / Josie?Geris / Shervan?Gharari / Tom?Gleeson / Miriam?Glendell / Alena?Gonzalez Bevacqua / Mar?a P.?Gonz?lez-Dugo / Salvatore?Grimaldi / A. B.?Gupta / Bj?rn?Guse / Dawei?Han / David?Hannah / Adrian?Harpold / Stefan?Haun / Kate?Heal / Kay?Helfricht / Mathew?Herrnegger / Matthew?Hipsey / Hana?Hlav??ikov? / Clara?Hohmann / Ladislav?Holko / Christopher?Hopkinson / Markus?Hrachowitz / Tissa H.?Illangasekare / Azhar?Inam / Camyla?Innocente / Erkan?Istanbulluoglu / Ben?Jarihani / Zahra?Kalantari / Andis?Kalvans / Sonu?Khanal / Sina?Khatami / Jens?Kiesel / Mike?Kirkby / Wouter?Knoben / Krzysztof?Kochanek / Silvia?Kohnov? / Alla?Kolechkina / Stefan?Krause / David?Kreamer / H.?Kreibich / Harald?Kunstmann / Holger?Lange / Margarida L. R.?Liberato / Eric?Lindquist / Timothy?Link / Junguo?Liu / Daniel Peter?Loucks / Charles?Luce / Gil?Mah? / Olga?Makarieva / Julien?Malard / Shamshagul?Mashtayeva / Shreedhar?Maskey / Josep?Mas-Pla / Maria?Mavrova-Guirguinova / Maurizio?Mazzoleni / Sebastian?Mernild / Bruce Dudley?Misstear / Alberto?Montanari / Hannes?M?ller-Thomy / Alireza?Nabizadeh / Fernando?Nardi / Christopher?Neale / Nataliia?Nesterova / Bakhram?Nurtaev / Vincent O.?Odongo / Subhabrata?Panda / Saket?Pande / Zhonghe?Pang / Georgia?Papacharalampous / Charles?Perrin / Laurent?Pfister / Rafael?Pimentel / Mar?a J.?Polo / David?Post / Cristina?Prieto Sierra / Maria-Helena?Ramos / Maik?Renner / Jos? Eduardo?Reynolds / Elena?Ridolfi / Riccardo?Rigon / Monica?Riva / David E.?Robertson / Renzo?Rosso / Tirthankar?Roy / Jo?o H.M.?S? / Gianfausto?Salvadori / Mel?Sandells / Bettina?Schaefli / Andreas?Schumann / Anna?Scolobig / Jan?Seibert / Eric?Servat / Mojtaba?Shafiei / Ashish?Sharma / Moussa?Sidibe / Roy C.?Sidle / Thomas?Skaugen / Hugh?Smith / Sabine M.?Spiessl / Lina?Stein / Ingelin?Steinsland / Ulrich?Strasser / Bob?Su / Jan?Szolgay / David?Tarboton / Flavia?Tauro / Guillaume?Thirel / Fuqiang?Tian / Rui?Tong / Kamshat?Tussupova / Hristos?Tyralis / Remko?Uijlenhoet / Rens?van Beek / Ruud J.?van der Ent / Martine?van der Ploeg / Anne F.?Van Loon / Ilja?van Meerveld / Ronald?van Nooijen / Pieter R.?van Oel / Jean-Philippe?Vidal / Jana?von Freyberg / S.?Vorogushyn / Przemyslaw?Wachniew / Andrew J.?Wade / Philip?Ward / Ida K.?Westerberg / Christopher?White / Eric F.?Wood / Ross?Woods / Zongxue?Xu / Koray K.?Yilmaz / Yongqiang?Zhang

    Hydrological Sciences Journal - Journal des Sciences Hydrologiques

    2019  

    Publishing country de
    Document type Article ; Online
    DOI 10.1080/02626667.2019.1620507
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

    More links

    Kategorien

To top