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  1. Article ; Online: Antiviral strategies targeting host factors and mechanisms obliging +ssRNA viral pathogens.

    Mahajan, Supreeti / Choudhary, Shweta / Kumar, Pravindra / Tomar, Shailly

    Bioorganic & medicinal chemistry

    2021  Volume 46, Page(s) 116356

    Abstract: The ongoing COVID-19 pandemic, periodic recurrence of viral infections, and the emergence of challenging variants has created an urgent need of alternative therapeutic approaches to combat the spread of viral infections, failing to which may pose a ... ...

    Abstract The ongoing COVID-19 pandemic, periodic recurrence of viral infections, and the emergence of challenging variants has created an urgent need of alternative therapeutic approaches to combat the spread of viral infections, failing to which may pose a greater risk to mankind in future. Resilience against antiviral drugs or fast evolutionary rate of viruses is stressing the scientific community to identify new therapeutic approaches for timely control of disease. Host metabolic pathways are exquisite reservoir of energy to viruses and contribute a diverse array of functions for successful replication and pathogenesis of virus. Targeting the host factors rather than viral enzymes to cease viral infection, has emerged as an alternative antiviral strategy. This approach offers advantage in terms of increased threshold to viral resistance and can provide broad-spectrum antiviral action against different viruses. The article here provides substantial review of literature illuminating the host factors and molecular mechanisms involved in innate/adaptive responses to viral infection, hijacking of signalling pathways by viruses and the intracellular metabolic pathways required for viral replication. Host-targeted drugs acting on the pathways usurped by viruses are also addressed in this study. Host-directed antiviral therapeutics might prove to be a rewarding approach in controlling the unprecedented spread of viral infection, however the probability of cellular side effects or cytotoxicity on host cell should not be ignored at the time of clinical investigations.
    MeSH term(s) Animals ; Antiviral Agents/pharmacology ; Cytokines/metabolism ; Frameshifting, Ribosomal/drug effects ; Frameshifting, Ribosomal/physiology ; Glycosylation/drug effects ; Humans ; Immunity/drug effects ; Immunity/physiology ; Lipid Metabolism/drug effects ; Lipid Metabolism/physiology ; Metabolic Networks and Pathways/drug effects ; Metabolic Networks and Pathways/physiology ; Polyamines/metabolism ; Positive-Strand RNA Viruses/drug effects ; Positive-Strand RNA Viruses/physiology ; Signal Transduction/drug effects ; Signal Transduction/physiology ; Ubiquitination/drug effects ; Ubiquitination/physiology
    Chemical Substances Antiviral Agents ; Cytokines ; Polyamines
    Language English
    Publishing date 2021-08-08
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 1161284-8
    ISSN 1464-3391 ; 0968-0896
    ISSN (online) 1464-3391
    ISSN 0968-0896
    DOI 10.1016/j.bmc.2021.116356
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Inhibition of Chikungunya virus by an adenosine analog targeting the SAM‐dependent nsP1 methyltransferase

    Mudgal, Rajat / Mahajan, Supreeti / Tomar, Shailly

    FEBS letters. 2020 Feb., v. 594, no. 4

    2020  

    Abstract: Alphaviruses, including Chikungunya (CHIKV) and Venezuelan equine encephalitis virus (VEEV), are among the leading causes of recurrent epidemics all over the world. Alphaviral nonstructural protein 1 (nsP1) orchestrates the capping of nascent viral RNA ... ...

    Abstract Alphaviruses, including Chikungunya (CHIKV) and Venezuelan equine encephalitis virus (VEEV), are among the leading causes of recurrent epidemics all over the world. Alphaviral nonstructural protein 1 (nsP1) orchestrates the capping of nascent viral RNA via its S‐adenosyl methionine‐dependent N‐7‐methyltransferase (MTase) and guanylyltransferase activities. Here, we developed and validated a novel capillary electrophoresis (CE)‐based assay for measuring the MTase activity of purified VEEV and CHIKV nsP1. We employed the assay to assess the MTase inhibition efficiency of a few adenosine analogs and identified 5‐iodotubercidin (5‐IT) as an inhibitor of nsP1. The antiviral potency of 5‐IT was evaluated in vitro using a combination of cell‐based assays, which suggest that 5‐IT is efficacious against CHIKV in cell culture (EC₅₀: 0.409 µm).
    Keywords Chikungunya virus ; RNA ; Venezuelan equine encephalitis virus ; adenosine ; capillary electrophoresis ; cell culture ; methyltransferases ; viral nonstructural proteins
    Language English
    Dates of publication 2020-02
    Size p. 678-694.
    Publishing place John Wiley & Sons, Ltd
    Document type Article
    Note JOURNAL ARTICLE
    ZDB-ID 212746-5
    ISSN 1873-3468 ; 0014-5793
    ISSN (online) 1873-3468
    ISSN 0014-5793
    DOI 10.1002/1873-3468.13642
    Database NAL-Catalogue (AGRICOLA)

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  3. Article ; Online: Inhibition of Chikungunya virus by an adenosine analog targeting the SAM-dependent nsP1 methyltransferase.

    Mudgal, Rajat / Mahajan, Supreeti / Tomar, Shailly

    FEBS letters

    2019  Volume 594, Issue 4, Page(s) 678–694

    Abstract: Alphaviruses, including Chikungunya (CHIKV) and Venezuelan equine encephalitis virus (VEEV), are among the leading causes of recurrent epidemics all over the world. Alphaviral nonstructural protein 1 (nsP1) orchestrates the capping of nascent viral RNA ... ...

    Abstract Alphaviruses, including Chikungunya (CHIKV) and Venezuelan equine encephalitis virus (VEEV), are among the leading causes of recurrent epidemics all over the world. Alphaviral nonstructural protein 1 (nsP1) orchestrates the capping of nascent viral RNA via its S-adenosyl methionine-dependent N-7-methyltransferase (MTase) and guanylyltransferase activities. Here, we developed and validated a novel capillary electrophoresis (CE)-based assay for measuring the MTase activity of purified VEEV and CHIKV nsP1. We employed the assay to assess the MTase inhibition efficiency of a few adenosine analogs and identified 5-iodotubercidin (5-IT) as an inhibitor of nsP1. The antiviral potency of 5-IT was evaluated in vitro using a combination of cell-based assays, which suggest that 5-IT is efficacious against CHIKV in cell culture (EC
    MeSH term(s) Adenosine/analogs & derivatives ; Adenosine/pharmacology ; Amino Acid Sequence ; Animals ; Antiviral Agents/chemistry ; Antiviral Agents/pharmacology ; Chikungunya virus/drug effects ; Chikungunya virus/enzymology ; Chikungunya virus/physiology ; Chlorocebus aethiops ; Methyltransferases/metabolism ; Vero Cells ; Virus Replication/drug effects
    Chemical Substances Antiviral Agents ; Methyltransferases (EC 2.1.1.-) ; methionine S-methyltransferase (EC 2.1.1.12) ; Adenosine (K72T3FS567)
    Keywords covid19
    Language English
    Publishing date 2019-11-02
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 212746-5
    ISSN 1873-3468 ; 0014-5793
    ISSN (online) 1873-3468
    ISSN 0014-5793
    DOI 10.1002/1873-3468.13642
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Chapter 19 Advances in structure-assisted antiviral discovery for animal viral diseases

    Tomar, Shailly / Mahajan, Supreeti / Kumar, Ravi

    Genomics and Biotechnological Advances in Veterinary, Poultry, and Fisheries

    Abstract: Abstract The latest advancements in drug development are structure-assisted and computer-aided identification, design, and synthesis of target-specific antiviral. Structural virology of animal viruses has made valuable contribution to our understanding ... ...

    Abstract Abstract The latest advancements in drug development are structure-assisted and computer-aided identification, design, and synthesis of target-specific antiviral. Structural virology of animal viruses has made valuable contribution to our understanding of viruses in general, replication, evolution, and interaction with the host. Structure–function relation studies are definitely the need of the hour for rational design of drugs and vaccines to effectively treat animal viral diseases. These studies are important for economical, veterinary, and human medical perspectives. X-ray crystallography, nuclear magnetic resonance and cryo-electron microscopy techniques elaborate the structure–function relation studies by utilizing various computational approaches for structure-assisted designing of drug molecules and antiviral against viruses. Availability of protein three-dimensional structures, high-performance computing, data management software, and internet are enhancing the modern day drug discovery process. Computational tools offer the advantage of delivering new drug candidates more quickly and at a lower cost. Various viral proteins that are necessary for the survival of the virus inside the host are discussed in this chapter such as viral polymerase, helicase, protease, etc. Various antiviral drug molecules identified and designed on the basis of the structure of viral proteins which are highlighted, and disclosed details of the available inhibitors and potential antiviral are discussed. Further improvement in identified inhibitors, the need of novel structure-based drugs and their clinical testing is emphasized. This chapter describes briefly the structural techniques and advances made in animal virology toward structure-based identification and development of antiviral for treatment of animal viruses. In the future, the studies discussed may serve as the basis for development of potential antiviral against animal viral diseases.
    Keywords covid19
    Publisher Elsevier; PMC
    Document type Article ; Online
    DOI 10.1016/b978-0-12-816352-8.00019-9
    Database COVID19

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  5. Article ; Online: Advances in structure-assisted antiviral discovery for animal viral diseases

    Tomar, Shailly / Mahajan, Supreeti / Kumar, Ravi

    Genomics and Biotechnological Advances in Veterinary, Poultry, and Fisheries

    Abstract: The latest advancements in drug development are structure-assisted and computer-aided identification, design, and synthesis of target-specific antiviral. Structural virology of animal viruses has made valuable contribution to our understanding of viruses ...

    Abstract The latest advancements in drug development are structure-assisted and computer-aided identification, design, and synthesis of target-specific antiviral. Structural virology of animal viruses has made valuable contribution to our understanding of viruses in general, replication, evolution, and interaction with the host. Structure–function relation studies are definitely the need of the hour for rational design of drugs and vaccines to effectively treat animal viral diseases. These studies are important for economical, veterinary, and human medical perspectives. X-ray crystallography, nuclear magnetic resonance and cryo-electron microscopy techniques elaborate the structure–function relation studies by utilizing various computational approaches for structure-assisted designing of drug molecules and antiviral against viruses. Availability of protein three-dimensional structures, high-performance computing, data management software, and internet are enhancing the modern day drug discovery process. Computational tools offer the advantage of delivering new drug candidates more quickly and at a lower cost. Various viral proteins that are necessary for the survival of the virus inside the host are discussed in this chapter such as viral polymerase, helicase, protease, etc. Various antiviral drug molecules identified and designed on the basis of the structure of viral proteins which are highlighted, and disclosed details of the available inhibitors and potential antiviral are discussed. Further improvement in identified inhibitors, the need of novel structure-based drugs and their clinical testing is emphasized. This chapter describes briefly the structural techniques and advances made in animal virology toward structure-based identification and development of antiviral for treatment of animal viruses. In the future, the studies discussed may serve as the basis for development of potential antiviral against animal viral diseases.
    Keywords covid19
    Publisher Elsevier; PMC
    Document type Article ; Online
    DOI 10.1016/b978-0-12-816352-8.00019-9
    Database COVID19

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