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  1. Article ; Online: Prevalence of Colonic Polyps Detected by Colonoscopy in Symptomatic Patients and Comparison Between Different Age Groups. What Age Should be Considered for Investigation?

    Ejtehadi, Fardad / Taghavi, Ali Reza / Ejtehadi, Farshid / Shahramian, Iraj / Niknam, Ramin / Moini, Maryam / Tahani, Masoud

    Polski przeglad chirurgiczny

    2023  Volume 96, Issue 1, Page(s) 15–21

    Abstract: ... Introduction: ... The Burden of Colorectal cancer (CRC) as one of the most common malignancies is considerable worldwide, with 1.8 million diagnoses each year. Although it is well established that most CRCs arise from colonic polyps, guidelines and ... ...

    Abstract Introduction: The Burden of Colorectal cancer (CRC) as one of the most common malignancies is considerable worldwide, with 1.8 million diagnoses each year. Although it is well established that most CRCs arise from colonic polyps, guidelines and recommendations indicate different ages as starting points for endoscopic examination of the colon, either as cancer screening programs or in symptomatic patients. Most standard guidelines adapt the cut-off age of 50. However, this has been challenged by the results of recent studies. This multicentric prospective study aimed to investigate the frequency, distribution, and histopathological findings of colonic polyps in patients who underwent colonoscopy with special attention to the age group of 40-49-year-olds compared with 50-59 in the population.

    Material and methods: This multicentric, prospective study was designed to enroll adult patients referred to three universityaffiliated endoscopy units. As many as 723 patients met all the inclusion criteria. Data analysis was performed on endoscopic and histopathological characteristics of all detected lesions, including colonic polyps and neoplastic lesions.

    Results: A total of 723 patients with a mean age of 46.03 (16.8) years were included in this study. Rectal bleeding was the most frequent symptom (40.9%). One hundred and thirteen patients (15.6%) were found to have colonic polyps, and 11 cases (1.52%) of CRC were detected. Most polyps were located in the left colon (67.5%). There was no statistical difference in the prevalence of adenomatous polyps between the age group of 40-49 years and 50-59 years (P = 0.77). Detailed examination of data using receiver operating characteristic (ROC) curve analysis not only showed age is a risk factor for the presence of colonic polyps but also revealed the cut-off age of 42.5 for the presence of all types of colonic polyps (44.5 years for adenomatous polyps).

    Conclusion: This study has showed a similar polyp prevalence in the age group of 40-49 years as compared to 50-59. Our study suggests that appropriate colon examination should be performed at a younger age to achieve early detection of colonic polyps, specifically in patients with red flag symptoms.
    MeSH term(s) Adult ; Humans ; Middle Aged ; Colonic Polyps/diagnosis ; Colonic Polyps/epidemiology ; Prospective Studies ; Prevalence ; Retrospective Studies ; Colonoscopy ; Adenomatous Polyps/pathology
    Language English
    Publishing date 2023-10-27
    Publishing country Poland
    Document type Multicenter Study ; Journal Article
    ZDB-ID 128732-1
    ISSN 2299-2847 ; 0032-373X
    ISSN (online) 2299-2847
    ISSN 0032-373X
    DOI 10.5604/01.3001.0053.3997
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: BRCA1 mutation site may be linked with nuclear DNA ploidy in BRCA1-mutated ovarian carcinomas.

    Aghmesheh, Morteza / Saxena, Akshat / Niknam, Farshid

    Asia-Pacific journal of clinical oncology

    2015  Volume 11, Issue 2, Page(s) 135–141

    Abstract: Aims: BRCA1 has a role in maintaining normal nuclear DNA content during cell division and its inactivation may result in DNA aneuploidy and cancer progression. BRCA1-linked breast cancers are more aneuploid and have a worse prognosis, but this has not ... ...

    Abstract Aims: BRCA1 has a role in maintaining normal nuclear DNA content during cell division and its inactivation may result in DNA aneuploidy and cancer progression. BRCA1-linked breast cancers are more aneuploid and have a worse prognosis, but this has not been elucidated in ovarian cancers. This study explores the potential difference in ploidy status between BRCA1-mutated and sporadic ovarian carcinomas. It also explores the potential association between BRCA1 mutation site and DNA ploidy status.
    Methods: This study compared DNA ploidy status of tumor blocks from 23 BRCA1-mutated ovarian carcinomas with that of 23 sporadic ovarian carcinomas matched for histologic subtype, patient age, stage and grade. DNA content of the nuclei was measured by Feulgen-Schiff staining followed by image cytometry and compared.
    Results: BRCA1-linked tumors with a stop codon closer to the N-terminal (between 1 and 500 aa; 6/6, 100%) had a significantly higher frequency of nondiploidy compared with those with stop codon above 500 aa (7/12, 58%) (P = 0.033). A diploid peak was detected in 28% of BRCA1-mutated ovarian cancers and in 33% of sporadic ovarian cancers.
    Conclusions: The present study concluded that ovarian tumors with mutations closer to the N-terminal of BRCA1 may have a higher risk of DNA aneuploidy. There is no significant difference between BRCA1-mutated and sporadic ovarian carcinomas with respect to the DNA content.
    MeSH term(s) Aneuploidy ; DNA, Neoplasm/genetics ; Female ; Genes, BRCA1/physiology ; Humans ; Middle Aged ; Mutation ; Ovarian Neoplasms/genetics ; Ploidies
    Chemical Substances DNA, Neoplasm
    Language English
    Publishing date 2015-06
    Publishing country Australia
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2187409-8
    ISSN 1743-7563 ; 1743-7555
    ISSN (online) 1743-7563
    ISSN 1743-7555
    DOI 10.1111/ajco.12310
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Cholangiocarcinoma and liver transplantation: What we know so far?

    Safarpour, Ali Reza / Askari, Hassan / Ejtehadi, Farshid / Azarnezhad, Asaad / Raeis-Abdollahi, Ehsan / Tajbakhsh, Amir / Abazari, Mohammad Foad / Tarkesh, Firoozeh / Shamsaeefar, Alireza / Niknam, Ramin / Sivandzadeh, Gholam Reza / Lankarani, Kamran Bagheri / Ejtehadi, Fardad

    World journal of gastrointestinal pathophysiology

    2021  Volume 12, Issue 5, Page(s) 84–105

    Abstract: Cholangiocarcinoma (CCA) is a type of cancer with increasing prevalence around the world that originates from cholangiocytes, the epithelial cells of the bile duct. The tumor begins insidiously and is distinguished by high grade neoplasm, poor outcome, ... ...

    Abstract Cholangiocarcinoma (CCA) is a type of cancer with increasing prevalence around the world that originates from cholangiocytes, the epithelial cells of the bile duct. The tumor begins insidiously and is distinguished by high grade neoplasm, poor outcome, and high risk for recurrence. Liver transplantation has become broadly accepted as a treatment option for CCA. Liver transplantation is expected to play a crucial role as palliative and curative therapy for unresectable hilar CCA and intrahepatic CCA. The purpose of this study was to determine which cases with CCA should be subjected to liver transplantation instead of resection, although reported post-transplant recurrence rate averages approximately 20%. This review also aims to highlight the molecular current frontiers of CCA and directions of liver transplantation for CCA.
    Language English
    Publishing date 2021-10-15
    Publishing country United States
    Document type Journal Article ; Review
    ZDB-ID 2583474-5
    ISSN 2150-5330
    ISSN 2150-5330
    DOI 10.4291/wjgp.v12.i5.84
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Cloud Point Extraction and Determination of Silver Ion in Real Sample using Bis((1H-benzo[d ]imidazol-2yl)methyl)sulfane

    Farshid Ahmadi / Khodabakhsh Niknam / Ebrahim Niknam / Saeid Delavari / Azadeh Khanmohammadi

    Journal of Chemistry, Vol 8, Iss 1, Pp 435-

    2011  Volume 442

    Keywords Chemistry ; QD1-999 ; Science ; Q ; DOAJ:Chemistry (General) ; DOAJ:Chemistry
    Language English
    Publishing date 2011-01-01T00:00:00Z
    Publisher Hindawi Publishing Corporation
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  5. Article ; Online: Identification of FDA approved drugs against SARS-CoV-2 RNA dependent RNA polymerase (RdRp) and 3-chymotrypsin-like protease (3CLpro), drug repurposing approach.

    Molavi, Zahra / Razi, Sara / Mirmotalebisohi, Seyed Amir / Adibi, Amirjafar / Sameni, Marzieh / Karami, Farshid / Niazi, Vahid / Niknam, Zahra / Aliashrafi, Morteza / Taheri, Mohammad / Ghafouri-Fard, Soudeh / Jeibouei, Shabnam / Mahdian, Soodeh / Zali, Hakimeh / Ranjbar, Mohammad Mehdi / Yazdani, Mohsen

    Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie

    2021  Volume 138, Page(s) 111544

    Abstract: The RNA-dependent RNA polymerase (RdRp) and 3C-like protease (3CLpro) from SARS-CoV-2 play crucial roles in the viral life cycle and are considered the most promising targets for drug discovery against SARS-CoV-2. In this study, FDA-approved drugs were ... ...

    Abstract The RNA-dependent RNA polymerase (RdRp) and 3C-like protease (3CLpro) from SARS-CoV-2 play crucial roles in the viral life cycle and are considered the most promising targets for drug discovery against SARS-CoV-2. In this study, FDA-approved drugs were screened to identify the probable anti-RdRp and 3CLpro inhibitors by molecular docking approach. The number of ligands selected from the PubChem database of NCBI for screening was 1760. Ligands were energy minimized using Open Babel. The RdRp and 3CLpro protein sequences were retrieved from the NCBI database. For Homology Modeling predictions, we used the Swiss model server. Their structure was then energetically minimized using SPDB viewer software and visualized in the CHIMERA UCSF software. Molecular dockings were performed using AutoDock Vina, and candidate drugs were selected based on binding affinity (∆G). Hydrogen bonding and hydrophobic interactions between ligands and proteins were visualized using Ligplot and the Discovery Studio Visualizer v3.0 software. Our results showed 58 drugs against RdRp, which had binding energy of - 8.5 or less, and 69 drugs to inhibit the 3CLpro enzyme with a binding energy of - 8.1 or less. Six drugs based on binding energy and number of hydrogen bonds were chosen for the next step of molecular dynamics (MD) simulations to investigate drug-protein interactions (including Nilotinib, Imatinib and dihydroergotamine for 3clpro and Lapatinib, Dexasone and Relategravir for RdRp). Except for Lapatinib, other drugs-complexes were stable during MD simulation. Raltegravir, an anti-HIV drug, was observed to be the best compound against RdRp based on docking binding energy (-9.5 kcal/mole) and MD results. According to the MD results and binding energy, dihydroergotamine is a suitable candidate for 3clpro inhibition (-9.6 kcal/mol). These drugs were classified into several categories, including antiviral, antibacterial, anti-inflammatory, anti-allergic, cardiovascular, anticoagulant, BPH and impotence, antipsychotic, antimigraine, anticancer, and so on. The common prescription-indications for some of these medication categories appeared somewhat in line with manifestations of COVID-19. We hope that they can be beneficial for patients with certain specific symptoms of SARS-CoV-2 infection, but they can also probably inhibit viral enzymes. We recommend further experimental evaluations in vitro and in vivo on these FDA-approved drugs to assess their potential antiviral effect on SARS-CoV-2.
    MeSH term(s) Animals ; Antiviral Agents/adverse effects ; Antiviral Agents/therapeutic use ; COVID-19/drug therapy ; COVID-19/virology ; Coronavirus 3C Proteases/antagonists & inhibitors ; Coronavirus 3C Proteases/metabolism ; Dihydroergotamine/therapeutic use ; Drug Approval ; Drug Repositioning ; Enzyme Inhibitors/therapeutic use ; Host-Pathogen Interactions ; Humans ; Molecular Docking Simulation ; Molecular Dynamics Simulation ; RNA-Dependent RNA Polymerase/antagonists & inhibitors ; RNA-Dependent RNA Polymerase/metabolism ; Raltegravir Potassium/therapeutic use ; SARS-CoV-2/drug effects ; SARS-CoV-2/enzymology ; United States ; United States Food and Drug Administration
    Chemical Substances Antiviral Agents ; Enzyme Inhibitors ; Dihydroergotamine (436O5HM03C) ; Raltegravir Potassium (43Y000U234) ; RNA-Dependent RNA Polymerase (EC 2.7.7.48) ; 3C-like proteinase, SARS-CoV-2 (EC 3.4.22.-) ; Coronavirus 3C Proteases (EC 3.4.22.28)
    Language English
    Publishing date 2021-03-31
    Publishing country France
    Document type Journal Article
    ZDB-ID 392415-4
    ISSN 1950-6007 ; 0753-3322 ; 0300-0893
    ISSN (online) 1950-6007
    ISSN 0753-3322 ; 0300-0893
    DOI 10.1016/j.biopha.2021.111544
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Approach to multiple pulmonary nodules: a case report and review of literature.

    Niknam, Farshid / Chen, Jiezhong / Napaki, Sabar / Aghmesheh, Morteza

    TheScientificWorldJournal

    2011  Volume 11, Page(s) 760–765

    Abstract: Chest X-ray and CT examinations often find pulmonary nodules that could be malignant or benign. A case is presented and discussed here in order to improve diagnosis and management of pulmonary nodules. A 62-year-old lady was found to have multiple ... ...

    Abstract Chest X-ray and CT examinations often find pulmonary nodules that could be malignant or benign. A case is presented and discussed here in order to improve diagnosis and management of pulmonary nodules. A 62-year-old lady was found to have multiple pulmonary nodules by X-ray when she complained of a cough and fever. This was confirmed by a CT scan. Fine needle aspiration (FNA) of one of the lung lesions reported scant atypical epithelial cells that stained positive for TTF-1 and cytokeratin 7, but negative for cytokeratin 20. Thus, it was suspicious for large cell carcinoma. A videothoracoscopic lung biopsy and histopathology were applied and showed a necrotic nodule with surrounding chronic inflammation and macrophage response, with no evidence of malignant cells. Atypical reactive pneumocytes at the periphery of the lesion (an old infarct) were probably equivalent to the atypical cells seen on cytology. This result changed the diagnosis of our patient from a malignant condition to a benign process. Thus, CT and FNA may give a false positive. A second pathological opinion is very useful for the right diagnosis and management, as shown in our case.
    MeSH term(s) Biopsy, Needle ; Female ; Humans ; Middle Aged ; Multiple Pulmonary Nodules/diagnostic imaging ; Multiple Pulmonary Nodules/pathology ; Radiography, Thoracic ; Tomography, X-Ray Computed
    Language English
    Publishing date 2011-04-05
    Publishing country United States
    Document type Case Reports ; Journal Article ; Review
    ZDB-ID 2075968-X
    ISSN 1537-744X ; 1537-744X
    ISSN (online) 1537-744X
    ISSN 1537-744X
    DOI 10.1100/tsw.2011.74
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Does irrigation of the subdiaphragmatic region with ropivacaine reduce the incidence of right shoulder tip pain after laparoscopic cholecystectomy? A prospective randomized, double-blind, controlled study.

    Niknam, Farshid / Saxena, Akshat / Niles, Navindran / Budak, Ulvi U / Mekisic, Allan

    The American surgeon

    2014  Volume 80, Issue 1, Page(s) E17–8

    MeSH term(s) Adult ; Aged ; Aged, 80 and over ; Amides/therapeutic use ; Anesthetics, Local/therapeutic use ; Cholecystectomy, Laparoscopic ; Cholelithiasis/surgery ; Diaphragm ; Double-Blind Method ; Female ; Humans ; Incidence ; Intraoperative Care/methods ; Male ; Middle Aged ; Pain Measurement ; Pain, Postoperative/epidemiology ; Pain, Postoperative/prevention & control ; Prospective Studies ; Shoulder Pain/epidemiology ; Shoulder Pain/etiology ; Shoulder Pain/prevention & control ; Therapeutic Irrigation ; Treatment Outcome
    Chemical Substances Amides ; Anesthetics, Local ; ropivacaine (7IO5LYA57N)
    Language English
    Publishing date 2014-01
    Publishing country United States
    Document type Journal Article ; Randomized Controlled Trial
    ZDB-ID 202465-2
    ISSN 1555-9823 ; 0003-1348
    ISSN (online) 1555-9823
    ISSN 0003-1348
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Cloud Point Extraction and Determination of Silver Ion in Real Sample using Bis((1H-benzo[d ]imidazol-2yl)methyl)sulfane

    Farshid Ahmadi / Khodabakhsh Niknam / Ebrahim Niknam / Saeid Delavari / Azadeh Khanmohammadi

    E-Journal of Chemistry, Vol 8, Iss 1, Pp 435-

    2011  Volume 442

    Abstract: Bis((1H-benzo[d]imidazol-2yl)methyl)sulfane (BHIS) was used as a complexing agent in cloud point extraction for the first time and applied for selective pre-concentration of trace amounts of silver. The method is based on the extraction of silver at pH 8. ...

    Abstract Bis((1H-benzo[d]imidazol-2yl)methyl)sulfane (BHIS) was used as a complexing agent in cloud point extraction for the first time and applied for selective pre-concentration of trace amounts of silver. The method is based on the extraction of silver at pH 8.0 by using non-ionic surfactant T-X114 and bis((1H-benzo[d]imidazol-2yl)methyl)sulfane as a chelating agent. The adopted concentrations for BHIS, Triton X-114 and HNO3, bath temperature, centrifuge rate and time were optimized. Detection limits (3SDb/m) of 1.7 along with enrichment factor of 39 for silver ion was achieved. The high efficiency of cloud point extraction to carry out the determination of analytes in complex matrices was demonstrated. The proposed method was successfully applied to the ultra-trace determination of silver in real samples.
    Keywords Chemistry ; QD1-999
    Language English
    Publishing date 2011-01-01T00:00:00Z
    Publisher Hindawi Publishing Corporation
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article ; Online: Increased Expression of Toll-Like Receptors 2 and 4 in Renal Transplant Recipients that Develop Allograft Dysfunction: A Cohort Study.

    Hosseinzadeh, Morteza / Nafar, Mohsen / Ahmadpoor, Pedram / Noorbakhsh, Farshid / Yekaninejad, Mir Saeed / Niknam, Mohammad Hossein / Amirzargar, Aliakbar

    Iranian journal of immunology : IJI

    2017  Volume 14, Issue 1, Page(s) 24–34

    Abstract: Background: The incidence of ischemic reperfusion injury (IRI) in early phase post-transplantation and activation of toll-like receptor (TLR-2) and TLR-4 remarkably impact the outcome of a renal allograft.: Objective: To investigate whether the ... ...

    Abstract Background: The incidence of ischemic reperfusion injury (IRI) in early phase post-transplantation and activation of toll-like receptor (TLR-2) and TLR-4 remarkably impact the outcome of a renal allograft.
    Objective: To investigate whether the expression of TLRs in peripheral blood mononuclear cells (PBMCs) can predict the clinical outcome of kidney allografts.
    Methods: We obtained blood samples from 52 renal transplant patients before transplant, and 2, 90, and 180 days post-transplantation in order to analyze the surface expressions of TLR-2 and TLR-4 on peripheral blood monocytes. The expression patterns of TLR-2 and TLR-4 were compared between patients with graft dysfunction (GD) and those with well-functioning graft (WFG).
    Results: Significantly different mean dynamic changes in surface expression of TLR-2 according to percentage of TLR-2+ cells between (the GD and WFG) groups existed at most time-points before and after renal transplantation (p=0.007) with the exception of day 2 post-transplantation. We observed significantly higher mean fluorescence intensities of TLR-2 and TLR-4 on CD14+ cells in the GD group compared to the WFG group. This finding was particularly observed 180 days post-transplantation (p=0.001). Based on TLR-2 and TLR-4 protein expression for each step, multiple logistic regression and ROC curve analysis revealed that an increase in CD14+ TLR-2+ monocytes within the 90 days post-transplantaton was associated with increased risk of GD at 180 and 365 days post-transplantation [odds ratio (OR)=1.27, p=0.005)].
    Conclusion: Sequential monitoring of TLR-2 and TLR-4 expression patterns in peripheral blood monocytes appear to be prognostic and predictive biomarkers for early and late kidney allograft outcomes.
    MeSH term(s) Adult ; Allografts/immunology ; Biomarkers/metabolism ; Cohort Studies ; Female ; Follow-Up Studies ; Humans ; Kidney Transplantation ; Leukocytes, Mononuclear/immunology ; Lipopolysaccharide Receptors/metabolism ; Male ; Middle Aged ; Primary Graft Dysfunction/diagnosis ; Prognosis ; Risk ; Toll-Like Receptor 2/metabolism ; Toll-Like Receptor 4/metabolism ; Transplant Recipients
    Chemical Substances Biomarkers ; Lipopolysaccharide Receptors ; TLR2 protein, human ; TLR4 protein, human ; Toll-Like Receptor 2 ; Toll-Like Receptor 4
    Language English
    Publishing date 2017-03
    Publishing country Iran
    Document type Journal Article
    ISSN 1735-367X
    ISSN (online) 1735-367X
    DOI IJIv14i1A3
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Approach to Multiple Pulmonary Nodules

    Farshid Niknam / Jiezhong Chen / Sabar Napaki / Morteza Aghmesheh

    The Scientific World Journal, Vol 11, Pp 760-

    A Case Report and Review of Literature

    2011  Volume 765

    Abstract: Chest X-ray and CT examinations often find pulmonary nodules that could be malignant or benign. A case is presented and discussed here in order to improve diagnosis and management of pulmonary nodules. A 62-year-old lady was found to have multiple ... ...

    Abstract Chest X-ray and CT examinations often find pulmonary nodules that could be malignant or benign. A case is presented and discussed here in order to improve diagnosis and management of pulmonary nodules. A 62-year-old lady was found to have multiple pulmonary nodules by X-ray when she complained of a cough and fever. This was confirmed by a CT scan. Fine needle aspiration (FNA) of one of the lung lesions reported scant atypical epithelial cells that stained positive for TTF-1 and cytokeratin 7, but negative for cytokeratin 20. Thus, it was suspicious for large cell carcinoma. A videothoracoscopic lung biopsy and histopathology were applied and showed a necrotic nodule with surrounding chronic inflammation and macrophage response, with no evidence of malignant cells. Atypical reactive pneumocytes at the periphery of the lesion (an old infarct) were probably equivalent to the atypical cells seen on cytology. This result changed the diagnosis of our patient from a malignant condition to a benign process. Thus, CT and FNA may give a false positive. A second pathological opinion is very useful for the right diagnosis and management, as shown in our case.
    Keywords Technology ; T ; Medicine ; R ; Science ; Q
    Subject code 610
    Language English
    Publishing date 2011-01-01T00:00:00Z
    Publisher Hindawi Limited
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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