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Article ; Online: Autoantibodies against type I interferons are associated with multi-organ failure in COVID-19 patients.

Koning, Rutger / Bastard, Paul / Casanova, Jean-Laurent / Brouwer, Matthijs C / van de Beek, Diederik

2021 Volume 47, Issue 6, Page(s) 704–706

MeSH term(s)	Autoantibodies ; COVID-19 ; Humans ; Interferon Type I ; Interferons ; Multiple Organ Failure ; SARS-CoV-2
Chemical Substances	Autoantibodies ; Interferon Type I ; Interferons (9008-11-1)
Language	English
Publishing date	2021-04-09
Publishing country	United States
Document type	Letter ; Comment
ZDB-ID	80387-x
ISSN	1432-1238 ; 0340-0964 ; 0342-4642 ; 0935-1701
ISSN (online)	1432-1238
ISSN	0340-0964 ; 0342-4642 ; 0935-1701
DOI	10.1007/s00134-021-06392-4
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Article ; Online: Quantification of Unmethylated Insulin DNA Using Methylation Sensitive Restriction Enzyme Digital Polymerase Chain Reaction.

van de Leemkolk, Fenna E M / Nell, Rogier J / Versluis, Mieke / de Koning, Eelco J P / Huurman, Volkert A L / Alwayn, Ian P J / Ploeg, Rutger J / van der Velden, Pieter A / Engelse, Marten A

Transplant international : official journal of the European Society for Organ Transplantation

2022 Volume 35, Page(s) 10167

Abstract: Assessment of specific β-cell death can be used to determine the quality and viability of pancreatic islets prior to transplantation and hence predict the suitability of the pancreas for isolation. Recently, several groups have demonstrated that ... ...

Abstract	Assessment of specific β-cell death can be used to determine the quality and viability of pancreatic islets prior to transplantation and hence predict the suitability of the pancreas for isolation. Recently, several groups have demonstrated that unmethylated insulin (
MeSH term(s)	DNA/genetics ; DNA/metabolism ; DNA Methylation ; Humans ; Insulin/metabolism ; Insulin-Secreting Cells/physiology ; Islets of Langerhans ; Polymerase Chain Reaction
Chemical Substances	Insulin ; DNA (9007-49-2)
Language	English
Publishing date	2022-04-07
Publishing country	Switzerland
Document type	Editorial
ZDB-ID	639435-8
ISSN	1432-2277 ; 0934-0874
ISSN (online)	1432-2277
ISSN	0934-0874
DOI	10.3389/ti.2022.10167
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Article ; Online: 3D stereophotogrammetry in children and adolescents with Scleroderma En Coup De Sabre/Parry-Romberg Syndrome: Description of a novel method for monitoring disease progression.

Ter Horst, Rutger / Maal, Thomas J J / de Koning, Martien J J / Mertens, Jorre S / Schatorjé, Ellen J H / Hoppenreijs, Esther P / Seyger, Marieke M B

Skin health and disease

2022 Volume 2, Issue 3, Page(s) e132

Abstract: Background: The diagnosis of Scleroderma En Coup de Sabre (ECDS)/Parry Romberg Syndrome (PRS) is mainly based on characteristic clinical findings. Methods to objectively monitor the course of the disease in a standardized way are lacking.: Objectives!# ...

Abstract	Background: The diagnosis of Scleroderma En Coup de Sabre (ECDS)/Parry Romberg Syndrome (PRS) is mainly based on characteristic clinical findings. Methods to objectively monitor the course of the disease in a standardized way are lacking. Objectives: This descriptive, retrospective, single centre cohort study aims to describe the contribution of 3D photographs in the assessment of the degree of facial asymmetry changes over time in growing children and adolescents with ECDS and PRS. Methods: Six patients diagnosed with ECDS/PRS, with a follow-up period of at least 24 months and at least three 3D photographs were included. Mirroring these 3D photographs was automatically performed using surface-based matching to generate a colour-coded distance map, illustrating the inter-surface distance and thereby asymmetry between the original and mirrored 3D photographs. The percentage of absolute distances between the original and mirrored 3D photograph were calculated. Results: In two patients, impressive decreases in the percentages of absolute distance levels over time were found, whereas the other patients did not show progression of asymmetry over time. Conclusion: This study shows the potential of 3D stereophotogrammetry as an objective tool to measure disease activity over time in patients with ECDS/PRS.
Language	English
Publishing date	2022-07-05
Publishing country	England
Document type	Journal Article
ISSN	2690-442X
ISSN (online)	2690-442X
DOI	10.1002/ski2.132
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Article ; Online: Is a preoperative multidisciplinary team meeting (cost)effective to improve outcome for high-risk adult patients undergoing noncardiac surgery: the PREPARATION study-a multicenter stepped-wedge cluster randomized trial.

Vernooij, Jacqueline E M / Boerlage, Romijn M / Doggen, Carine J M / Preckel, Benedikt / Dirksen, Carmen D / van Leeuwen, Barbara L / Spruit, Rutger J / Festen, Suzanne / van der Wal-Huisman, Hanneke / van Basten, Jean P / Kalkman, Cor J / Koning, Nick J

Trials

2023 Volume 24, Issue 1, Page(s) 660

Abstract: Background: As a result of increased life expectancy and improved care for patients suffering from chronic disease, the number of patients with multimorbidity requiring surgical intervention is increasing. For complex surgical patients, it is essential ... ...

Abstract	Background: As a result of increased life expectancy and improved care for patients suffering from chronic disease, the number of patients with multimorbidity requiring surgical intervention is increasing. For complex surgical patients, it is essential to balance the potential benefits of surgical treatment against the risk of permanent loss of functional capacity and quality of life due to complications. European and US guidelines on perioperative care recommend preoperative multidisciplinary team (MDT) discussions for high-risk noncardiac surgical patients. However, the evidence underlying benefits from preoperative MDT meetings with all relevant perioperative specialties present is limited. The current study aims to investigate the effect of implementation of preoperative MDT discussions for high-risk patients undergoing noncardiac surgery on serious adverse events. Methods/design: PREPARATION is a stepped-wedge cluster randomized trial in 14 Dutch hospitals without currently established preoperative MDT meeting. The intervention, preoperative MDT meetings, will be implemented sequentially with seven blocks of 2 hospitals switching from control (preoperative screening as usual) to the intervention every 3 months. Each hospital will be randomized to one of seven blocks. We aim to include 1200 patients. The primary outcome is the incidence of serious adverse events at 6 months. Secondary outcomes include (cost)effectiveness, functional outcome, and quality of life for up to 12 months. Discussion: PREPARATION is the first study to assess the effectiveness of a preoperative MDT meeting for high-risk noncardiac surgical patients in the presence of an anesthesiologist. If the results suggest that preoperative MDT discussions for high-risk patients are (cost)-effective, the current study facilitates implementation of preoperative MDT meetings in clinical practice. Trial registration: ClinicalTrials.gov NCT05703230. Registered on 11/09/2022.
MeSH term(s)	Humans ; Adult ; Quality of Life ; Medicine ; Perioperative Care ; Hospitals ; Patient Care Team
Language	English
Publishing date	2023-10-11
Publishing country	England
Document type	Randomized Controlled Trial ; Multicenter Study ; Journal Article
ZDB-ID	2040523-6
ISSN	1745-6215 ; 1468-6694 ; 1745-6215
ISSN (online)	1745-6215
ISSN	1468-6694 ; 1745-6215
DOI	10.1186/s13063-023-07685-3
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Article ; Online: Pneumolysin promotes host cell necroptosis and bacterial competence during pneumococcal meningitis as shown by whole-animal dual RNA-seq.

Jim, Kin Ki / Aprianto, Rieza / Koning, Rutger / Domenech, Arnau / Kurushima, Jun / van de Beek, Diederik / Vandenbroucke-Grauls, Christina M J E / Bitter, Wilbert / Veening, Jan-Willem

Cell reports

2022 Volume 41, Issue 12, Page(s) 111851

Abstract: Pneumolysin is a major virulence factor of Streptococcus pneumoniae that plays a key role in interaction with the host during invasive disease. How pneumolysin influences these dynamics between host and pathogen interaction during early phase of central ... ...

Abstract	Pneumolysin is a major virulence factor of Streptococcus pneumoniae that plays a key role in interaction with the host during invasive disease. How pneumolysin influences these dynamics between host and pathogen interaction during early phase of central nervous system infection in pneumococcal meningitis remains unclear. Using a whole-animal in vivo dual RNA sequencing (RNA-seq) approach, we identify pneumolysin-specific transcriptional responses in both S. pneumoniae and zebrafish (Danio rerio) during early pneumococcal meningitis. By functional enrichment analysis, we identify host pathways known to be activated by pneumolysin and discover the importance of necroptosis for host survival. Inhibition of this pathway using the drug GSK'872 increases host mortality during pneumococcal meningitis. On the pathogen's side, we show that pneumolysin-dependent competence activation is crucial for intra-host replication and virulence. Altogether, this study provides new insights into pneumolysin-specific transcriptional responses and identifies key pathways involved in pneumococcal meningitis.
MeSH term(s)	Animals ; Meningitis, Pneumococcal/genetics ; Meningitis, Pneumococcal/metabolism ; Meningitis, Pneumococcal/microbiology ; Zebrafish/metabolism ; Necroptosis ; RNA-Seq ; Streptococcus pneumoniae/metabolism ; Bacterial Proteins/genetics ; Bacterial Proteins/metabolism
Chemical Substances	plY protein, Streptococcus pneumoniae ; Bacterial Proteins
Language	English
Publishing date	2022-12-16
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2649101-1
ISSN	2211-1247 ; 2211-1247
ISSN (online)	2211-1247
ISSN	2211-1247
DOI	10.1016/j.celrep.2022.111851
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Article ; Online: Sodium Thiosulfate in Acute Myocardial Infarction: A Randomized Clinical Trial.

de Koning, Marie-Sophie L Y / van Dorp, Paulien / Assa, Solmaz / Pundziute-Do Prado, Gabija / Voskuil, Michiel / Anthonio, Rutger L / Veen, Duco / Leiner, Tim / Sibeijn-Kuiper, Anita J / van Goor, Harry / van Veldhuisen, Dirk J / van der Meer, Peter / Nijveldt, Robin / Lipšic, Erik / van der Harst, Pim

JACC. Basic to translational science

2023 Volume 8, Issue 10, Page(s) 1285–1294

Abstract: In this proof-of-principle trial, the hypothesis was investigated that sodium thiosulfate (STS), a potent antioxidant and hydrogen sulfide donor, reduces reperfusion injury. A total of 373 patients presenting with a first ST-segment elevation myocardial ... ...

Abstract	In this proof-of-principle trial, the hypothesis was investigated that sodium thiosulfate (STS), a potent antioxidant and hydrogen sulfide donor, reduces reperfusion injury. A total of 373 patients presenting with a first ST-segment elevation myocardial infarction received either 12.5 g STS intravenously or matching placebo at arrival at the hospital and 6 hours later. The primary outcome, infarct size, measured by cardiac magnetic resonance at 4 months after randomization, did not differ between the treatment arms. Secondary outcomes were comparable as well, suggesting no clinical benefit of STS in this population at relatively low risk for large infarction.
Language	English
Publishing date	2023-08-23
Publishing country	United States
Document type	Journal Article
ISSN	2452-302X
ISSN (online)	2452-302X
DOI	10.1016/j.jacbts.2023.06.001
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Article ; Online: Exploring the Influence of Alcohol Industry Funding in Observational Studies on Moderate Alcohol Consumption and Health.

Vos, Moniek / van Soest, Annick P M / van Wingerden, Tim / Janse, Marion L / Dijk, Rick M / Brouwer, Rutger J / de Koning, Iris / Feskens, Edith J M / Sierksma, Aafje

Advances in nutrition (Bethesda, Md.)

2020 Volume 11, Issue 5, Page(s) 1384–1391

Abstract: Funding of research by industry in general can lead to sponsorship bias. The aim of the current study was to conduct an initial exploration of the impact of sponsorship bias in observational alcohol research by focusing on a broad spectrum of health ... ...

Abstract	Funding of research by industry in general can lead to sponsorship bias. The aim of the current study was to conduct an initial exploration of the impact of sponsorship bias in observational alcohol research by focusing on a broad spectrum of health outcomes. The purpose was to determine whether the outcome depended on funding source. We focused on moderate alcohol consumption and used meta-analyses that are the basis of several international alcohol guidelines. These meta-analyses included observational studies that investigated the association of alcohol consumption with 14 different health outcomes, including all-cause mortality, several cardiovascular diseases and cancers, dementia, and type 2 diabetes. Subgroup analyses and metaregressions were conducted to investigate the association between moderate alcohol consumption and the risk of different health outcomes, comparing findings of studies funded by the alcohol industry, ones not funded by the alcohol industry, and studies with an unknown funding source. A total of 386 observational studies were included. Twenty-one studies (5.4%) were funded by the alcohol industry, 309 studies (80.1%) were not funded by the alcohol industry, and for the remaining 56 studies (14.5%) the funding source was unknown. Subgroup analyses and metaregressions did not show an effect of funding source on the association between moderate alcohol intake and different health outcomes. In conclusion, only a small proportion of observational studies in meta-analyses, referred to by several international alcohol guidelines, are funded by the alcohol industry. Based on this selection of observational studies the association between moderate alcohol consumption and different health outcomes does not seem to be related to funding source.
MeSH term(s)	Alcohol Drinking ; Bias ; Cardiovascular Diseases ; Diabetes Mellitus, Type 2 ; Ethanol ; Humans
Chemical Substances	Ethanol (3K9958V90M)
Language	English
Publishing date	2020-05-11
Publishing country	United States
Document type	Journal Article ; Meta-Analysis ; Research Support, Non-U.S. Gov't
ZDB-ID	2583634-1
ISSN	2156-5376 ; 2156-5376
ISSN (online)	2156-5376
ISSN	2156-5376
DOI	10.1093/advances/nmaa052
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Article ; Online: Rationale and Design of the Groningen Intervention Study for the Preservation of Cardiac Function with Sodium Thiosulfate after St-segment Elevation Myocardial Infarction (GIPS-IV) trial.

de Koning, Marie-Sophie Ly / van Dorp, Paulien / Assa, Solmaz / Hartman, Minke Ht / Voskuil, Michiel / Anthonio, Rutger L / Veen, Duco / Pundziute-Do Prado, Gabija / Leiner, Tim / van Goor, Harry / van der Meer, Peter / van Veldhuisen, Dirk J / Nijveldt, Robin / Lipsic, Erik / van der Harst, Pim

American heart journal

2021 Volume 243, Page(s) 167–176

Abstract: Background: Ischemia and subsequent reperfusion cause myocardial injury in patients presenting with ST-segment elevation myocardial infarction (STEMI). Hydrogen sulfide (H: Study design: The Groningen Intervention study for the Preservation of ... ...

Abstract	Background: Ischemia and subsequent reperfusion cause myocardial injury in patients presenting with ST-segment elevation myocardial infarction (STEMI). Hydrogen sulfide (H Study design: The Groningen Intervention study for the Preservation of cardiac function with STS after STEMI (GIPS-IV) trial (NCT02899364) is a double-blind, randomized, placebo-controlled, multicenter trial, which will enroll 380 patients with a first STEMI. Patients receive STS 12.5 grams intravenously or matching placebo in addition to standard care immediately at arrival at the catheterization laboratory after providing consent. A second dose is administered 6 hours later at the coronary care unit. The primary endpoint is myocardial infarct size as quantified by cardiac magnetic resonance imaging 4 months after randomization. Secondary endpoints include the effect of STS on peak CK-MB during admission and left ventricular ejection fraction and NT-proBNP levels at 4 months follow-up. Patients will be followed-up for 2 years to assess clinical endpoints. Conclusions: The GIPS-IV trial is the first study to determine the effect of a H
MeSH term(s)	Humans ; Myocardial Infarction ; Percutaneous Coronary Intervention ; ST Elevation Myocardial Infarction/drug therapy ; Stroke Volume ; Thiosulfates ; Treatment Outcome ; Ventricular Function, Left
Chemical Substances	Thiosulfates ; sodium thiosulfate (HX1032V43M)
Language	English
Publishing date	2021-09-15
Publishing country	United States
Document type	Journal Article ; Multicenter Study ; Randomized Controlled Trial ; Research Support, Non-U.S. Gov't
ZDB-ID	80026-0
ISSN	1097-6744 ; 0002-8703
ISSN (online)	1097-6744
ISSN	0002-8703
DOI	10.1016/j.ahj.2021.08.012
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Article ; Online: Potential impact of celiac disease genetic risk factors on T cell receptor signaling in gluten-specific CD4+ T cells.

Bakker, Olivier B / Ramírez-Sánchez, Aarón D / Borek, Zuzanna A / de Klein, Niek / Li, Yang / Modderman, Rutger / Kooy-Winkelaar, Yvonne / Johannesen, Marie K / Matarese, Filomena / Martens, Joost H A / Kumar, Vinod / van Bergen, Jeroen / Qiao, Shuo-Wang / Lundin, Knut E A / Sollid, Ludvig M / Koning, Frits / Wijmenga, Cisca / Withoff, Sebo / Jonkers, Iris H

Scientific reports

2021 Volume 11, Issue 1, Page(s) 9252

Abstract: Celiac disease is an auto-immune disease in which an immune response to dietary gluten leads to inflammation and subsequent atrophy of small intestinal villi, causing severe bowel discomfort and malabsorption of nutrients. The major instigating factor ... ...

Abstract	Celiac disease is an auto-immune disease in which an immune response to dietary gluten leads to inflammation and subsequent atrophy of small intestinal villi, causing severe bowel discomfort and malabsorption of nutrients. The major instigating factor for the immune response in celiac disease is the activation of gluten-specific CD4+ T cells expressing T cell receptors that recognize gluten peptides presented in the context of HLA-DQ2 and DQ8. Here we provide an in-depth characterization of 28 gluten-specific T cell clones. We assess their transcriptional and epigenetic response to T cell receptor stimulation and link this to genetic factors associated with celiac disease. Gluten-specific T cells have a distinct transcriptional profile that mostly resembles that of Th1 cells but also express cytokines characteristic of other types of T-helper cells. This transcriptional response appears not to be regulated by changes in chromatin state, but rather by early upregulation of transcription factors and non-coding RNAs that likely orchestrate the subsequent activation of genes that play a role in immune pathways. Finally, integration of chromatin and transcription factor binding profiles suggest that genes activated by T cell receptor stimulation of gluten‑specific T cells may be impacted by genetic variation at several genetic loci associated with celiac disease.
MeSH term(s)	Biomarkers/metabolism ; CD4-Positive T-Lymphocytes/immunology ; CD4-Positive T-Lymphocytes/metabolism ; Celiac Disease/chemically induced ; Celiac Disease/genetics ; Celiac Disease/immunology ; Celiac Disease/pathology ; Cytokines/immunology ; Cytokines/metabolism ; Gene Expression Profiling ; Gene Expression Regulation ; Glutens/administration & dosage ; Glutens/immunology ; Humans ; Receptors, Antigen, T-Cell/genetics ; Receptors, Antigen, T-Cell/immunology ; Transcriptome
Chemical Substances	Biomarkers ; Cytokines ; Receptors, Antigen, T-Cell ; Glutens (8002-80-0)
Language	English
Publishing date	2021-04-29
Publishing country	England
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2615211-3
ISSN	2045-2322 ; 2045-2322
ISSN (online)	2045-2322
ISSN	2045-2322
DOI	10.1038/s41598-021-86612-5
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Article ; Online: Potential impact of celiac disease genetic risk factors on T cell receptor signaling in gluten-specific CD4+ T cells

Olivier B. Bakker / Aarón D. Ramírez-Sánchez / Zuzanna A. Borek / Niek de Klein / Yang Li / Rutger Modderman / Yvonne Kooy-Winkelaar / Marie K. Johannesen / Filomena Matarese / Joost H. A. Martens / Vinod Kumar / Jeroen van Bergen / Shuo-Wang Qiao / Knut E. A. Lundin / Ludvig M. Sollid / Frits Koning / Cisca Wijmenga / Sebo Withoff / Iris H. Jonkers

Scientific Reports, Vol 11, Iss 1, Pp 1-

2021 Volume 15

Abstract: Abstract Celiac disease is an auto-immune disease in which an immune response to dietary gluten leads to inflammation and subsequent atrophy of small intestinal villi, causing severe bowel discomfort and malabsorption of nutrients. The major instigating ... ...

Abstract	Abstract Celiac disease is an auto-immune disease in which an immune response to dietary gluten leads to inflammation and subsequent atrophy of small intestinal villi, causing severe bowel discomfort and malabsorption of nutrients. The major instigating factor for the immune response in celiac disease is the activation of gluten-specific CD4+ T cells expressing T cell receptors that recognize gluten peptides presented in the context of HLA-DQ2 and DQ8. Here we provide an in-depth characterization of 28 gluten-specific T cell clones. We assess their transcriptional and epigenetic response to T cell receptor stimulation and link this to genetic factors associated with celiac disease. Gluten-specific T cells have a distinct transcriptional profile that mostly resembles that of Th1 cells but also express cytokines characteristic of other types of T-helper cells. This transcriptional response appears not to be regulated by changes in chromatin state, but rather by early upregulation of transcription factors and non-coding RNAs that likely orchestrate the subsequent activation of genes that play a role in immune pathways. Finally, integration of chromatin and transcription factor binding profiles suggest that genes activated by T cell receptor stimulation of gluten‑specific T cells may be impacted by genetic variation at several genetic loci associated with celiac disease.
Keywords	Medicine ; R ; Science ; Q
Subject code	570 ; 610
Language	English
Publishing date	2021-04-01T00:00:00Z
Publisher	Nature Portfolio
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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