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  1. Article ; Online: Advocating a watch-and-prepare approach with avian influenza.

    Ciminski, Kevin / Chase, Geoffrey / Schwemmle, Martin / Beer, Martin

    Nature microbiology

    2023  Volume 8, Issue 9, Page(s) 1603–1605

    MeSH term(s) Animals ; Influenza in Birds/prevention & control
    Language English
    Publishing date 2023-08-30
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 2058-5276
    ISSN (online) 2058-5276
    DOI 10.1038/s41564-023-01457-0
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: A Luminance-Based Lighting Design Method

    Daniel Bishop / J. Geoffrey Chase

    Sustainability, Vol 15, Iss 4369, p

    A Framework for Lighting Design and Review of Luminance Measures

    2023  Volume 4369

    Abstract: Imaging photometers and ray-tracing software packages have made it possible to capture and model high-resolution and accurate luminance maps. However, luminance map measurement is rarely seen in professional practice, despite its ability to evaluate ... ...

    Abstract Imaging photometers and ray-tracing software packages have made it possible to capture and model high-resolution and accurate luminance maps. However, luminance map measurement is rarely seen in professional practice, despite its ability to evaluate visual parameters accurately and directly, such as contrast, visual, size, and target brightness. Two barriers to the uptake of luminance measurement and associated design measures include (1) lack of knowledge of the range of measures available, and (2) difficulty in assessing whether a luminance-based lighting design method is a sufficient and justifiable replacement for the current illuminance-based practice. This paper reviews current practice and presents alternative luminance design measures and human needs for lighting to construct a framework for designing and comparing lighting design methods. It concludes by presenting a new luminance-based lighting method in the context of this framework to show that it is more accurate and comprehensive than current practice and can be enabled by emerging low-cost and increasingly accessible luminance measurement technologies. The overall outcomes provide the metrics and framework to bring more complete and effective luminance-based lighting design into practice.
    Keywords luminance ; luminance-maps ; lighting design ; efficient lighting ; alternative lighting design ; Environmental effects of industries and plants ; TD194-195 ; Renewable energy sources ; TJ807-830 ; Environmental sciences ; GE1-350
    Language English
    Publishing date 2023-03-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article: Socio-Economic Inequity: Diabetes in New Zealand.

    Holder-Pearson, Lui / Chase, James Geoffrey

    Frontiers in medicine

    2022  Volume 9, Page(s) 756223

    Language English
    Publishing date 2022-05-10
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2775999-4
    ISSN 2296-858X
    ISSN 2296-858X
    DOI 10.3389/fmed.2022.756223
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Preserving multi-dimensional information: A hypersphere method for parameter space analysis.

    Davey, Nicolas A C / Chase, J Geoffrey / Zhou, Cong / Murphy, Liam

    Heliyon

    2024  Volume 10, Issue 7, Page(s) e28822

    Abstract: Background: Physiological modelling often involves models described by large numbers of variables and significant volumes of clinical data. Mathematical interpretation of such models frequently necessitates analysing data points in high-dimensional ... ...

    Abstract Background: Physiological modelling often involves models described by large numbers of variables and significant volumes of clinical data. Mathematical interpretation of such models frequently necessitates analysing data points in high-dimensional spaces. Existing algorithms for analysing high-dimensional points either lose important dimensionality or do not describe the full position of points. Hence, there is a need for an algorithm which preserves this information.
    Methods: The most-distant uncovered point (MDUP) hypersphere method is a binary classification approach which defines a collection of equidistant N-dimensional points as the union of hyperspheres. The method iteratively generates hyperspheres at the most distant point in the interest region not yet contained within any hypersphere, until the entire region of interest is defined by the union of all generated hyperspheres. This method is tested on a 7-dimensional space with up to 35.8 million points representing feasible and infeasible spaces of model parameters for a clinically validated cardiovascular system model.
    Results: For different numbers of input points, the MDUP hypersphere method tends to generate large spheres away from the boundary of feasible and infeasible points, but generates the greatest number of relatively much smaller spheres around the boundary of the region of interest to fill this space. Runtime scales quadratically, in part because the current MDUP implementation is not parallelised.
    Conclusions: The MDUP hypersphere method can define points in a space of any dimension using only a collection of centre points and associated radii, making the results easily interpretable. It can identify large continuous regions, and in many cases capture the general structure of a region in only a relative few hyperspheres. The MDUP method also shows promise for initialising optimisation algorithm starting conditions within pre-defined feasible regions of model parameter spaces, which could improve model identifiability and the quality of optimisation results.
    Language English
    Publishing date 2024-03-30
    Publishing country England
    Document type Journal Article
    ZDB-ID 2835763-2
    ISSN 2405-8440
    ISSN 2405-8440
    DOI 10.1016/j.heliyon.2024.e28822
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Low-cost structured light imaging of regional volume changes for use in assessing mechanical ventilation.

    Zhou, Cong / Chase, J Geoffrey

    Computer methods and programs in biomedicine

    2022  Volume 226, Page(s) 107176

    Abstract: Background: Optimal setting of mechanical ventilators is critical for improving outcomes. Accurate, predictive lung mechanics models are effective in optimizing MV settings, but only at a global level as they cannot estimate regional lung volume ... ...

    Abstract Background: Optimal setting of mechanical ventilators is critical for improving outcomes. Accurate, predictive lung mechanics models are effective in optimizing MV settings, but only at a global level as they cannot estimate regional lung volume ventilation to assess the potential of local distension or under-ventilation. This study presents a low-cost structured light system for non-contact high resolution chest motion measurement to estimate regional lung volume changes.
    Methods: The system consists of a structured light projector and two cameras. A new pattern is designed to extract motion from sub-regions of the chest surface, and an efficient feature is proposed to provide a fast and accurate correspondence matching between two views. Reconstruction of 3D surface points is based on the matched points and stereo method. Asymmetric distribution of tidal volume into left and right lungs is estimated based on reconstructed regional chest expansion. A proof-of-concept experiment using a dummy model and two test lungs connected to a ventilator to provide differential chest expansion is conducted under tidal volumes of 400 ml, 500 ml and 600 ml, with results compared to the widely-used SURF and ORB methods.
    Results: Compared to the SURF and ORB methods, the proposed method is more computationally efficient with ∼40% less computational time cost, and higher accuracy for dense point correspondence. Finally, the proposed method estimated the region lung volumes with the maximum error of 8 ml under 600 ml tidal volume, indicating a good accuracy.
    Conclusions: Surface reconstruction results in a proof-of-concept experiment with differential chest expansion show good performance for the proposed pattern and method in extracting the key information for regional chest expansion. The proposed method is generalizable, with potential for use in other applications.
    MeSH term(s) Respiration, Artificial/methods ; Tidal Volume ; Ventilators, Mechanical ; Lung/diagnostic imaging ; Respiration
    Language English
    Publishing date 2022-10-06
    Publishing country Ireland
    Document type Journal Article
    ZDB-ID 632564-6
    ISSN 1872-7565 ; 0169-2607
    ISSN (online) 1872-7565
    ISSN 0169-2607
    DOI 10.1016/j.cmpb.2022.107176
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Single measurement estimation of central blood pressure using an arterial transfer function.

    Murphy, Liam / Chase, J Geoffrey

    Computer methods and programs in biomedicine

    2022  Volume 229, Page(s) 107254

    Abstract: Background: Central blood pressure (BP) better reflects the loading conditions on the major organs and is more closely correlated with future cardiovascular events. The increased invasiveness and risk of infection prevents the routine measurement of ... ...

    Abstract Background: Central blood pressure (BP) better reflects the loading conditions on the major organs and is more closely correlated with future cardiovascular events. The increased invasiveness and risk of infection prevents the routine measurement of central BP. Arterial transfer functions can provide central BP estimates from clinically available peripheral measurements. However, current methods are either generalized, potentially lacking the ability to adapt to inter and intra subject variability, or individualized based on additional, clinically unavailable, pulse transit time measurements. This work proposes a novel, self-contained method for individualizing an arterial transfer function from a single peripheral pressure measurement, capable of accurately estimating central BP in a range of hemodynamic conditions.
    Methods: Pulse wave analysis of femoral BP waves was employed to formulate initial approximations of central BP and arterial inlet flow waveforms, to serve as objective functions for the identification of all model parameters. Root mean squared error (RMSE), and systolic and pulse pressure errors were assessed with respect to invasive aortic BP measurements in a seven (7) porcine endotoxin experiments. Systolic and pulse pressure errors were analysed using Bland-Altman analysis. Method accuracy is also compared with an idealized transfer function, derived using the measured aortic-femoral pulse transit time and minimizing the RMSE of model output pressure with respect to reference aortic pressure, a generalized transfer function model, and invasive femoral pressure measurements.
    Results: Mean bias and limits of agreement (95% CI) for the proposed method were 1.0(-4.6, 6.7)mmHg and -1.0(-6.6, 4.6)mmHg for systolic and pulse pressure, respectively, compared to 3.6(-0.9, 8.2)mmHg and 2.7(-1.8, 7.3)mmHg for the generalized transfer function model. Mean bias and limits of agreement for femoral pressure measurements were -6.4(-15.0, 2.3)mmHg and -9.4(-18.1, -0.8)mmHg, for systolic and pulse pressure, respectively. The pooled mean and standard deviation of the RMSE produced by the single measurement method, relative to reference aortic pressure, was 4.3(1.1)mmHg, consistent with estimates produced by the idealized transfer function, 3.9(1.2)mmHg, and improving of the generalized transfer function, 4.6(1.4)mmHg.
    Conclusions: The proposed single measurement method provides accurate central BP estimates from routinely available peripheral pressure measurements, and nothing else. The method allows for the individualization of transfer functions on a per patient basis to better capture changes in patient condition during the progression of disease and subsequent treatment, at no additional clinical cost.
    MeSH term(s) Animals ; Swine ; Blood Pressure/physiology ; Blood Pressure Determination/methods ; Arteries ; Aorta/physiology ; Hemodynamics ; Pulse Wave Analysis/methods
    Language English
    Publishing date 2022-11-24
    Publishing country Ireland
    Document type Journal Article
    ZDB-ID 632564-6
    ISSN 1872-7565 ; 0169-2607
    ISSN (online) 1872-7565
    ISSN 0169-2607
    DOI 10.1016/j.cmpb.2022.107254
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Obstructive respiratory disease simulation device.

    Clifton, Jaimey A / Guy, Ella F S / Knopp, Jennifer L / Chase, J Geoffrey

    HardwareX

    2024  Volume 17, Page(s) e00512

    Abstract: Respiratory disease is a major contributor to healthcare costs, as well as increasing morbidity and early mortality. The device presented is used to simulate the effects of Chronic Obstructive Pulmonary Disease (COPD) in healthy people. The intended use ... ...

    Abstract Respiratory disease is a major contributor to healthcare costs, as well as increasing morbidity and early mortality. The device presented is used to simulate the effects of Chronic Obstructive Pulmonary Disease (COPD) in healthy people. The intended use is to provide data equivalent to COPD data measured from those who are ill for initial validation of respiratory mechanics models. It would thus eliminate the need to test unhealthy and/or fragile subjects, or the need for invasive or costly equipment based test methods. The device is used in conjunction with an open-access venturi-based flow sensor, to measure pressure, flow, and breath tidal volume. The device simulates the pressure and flow profiles of a person who has COPD including the non-linear increased resistance to end-exhalation and gas trapping. To achieve this non-linearity, a combination of high and low resistance outlets is used. Thus, the simulator allows the collection of patient-specific COPD-like breathing data in a non-invasive manner from healthy subjects. The device is low-cost with the majority of the parts 3D printed using a Prusa mini 3D printer and PLA filament.
    Language English
    Publishing date 2024-02-01
    Publishing country England
    Document type Journal Article
    ISSN 2468-0672
    ISSN (online) 2468-0672
    DOI 10.1016/j.ohx.2024.e00512
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Respiratory bi-directional pressure and flow data collection device with thoracic and abdominal circumferential monitoring.

    Guy, Ella F S / Geoffrey Chase, J / Holder-Pearson, Lui R

    HardwareX

    2022  Volume 12, Page(s) e00354

    Abstract: Non-invasive pressure and flow data from Venturi-based sensors can be used with validated models to identify patient-specific lung mechanics. To validate applied respiratory models a secondary measurement is required. Rotary encoder-based tape measures ... ...

    Abstract Non-invasive pressure and flow data from Venturi-based sensors can be used with validated models to identify patient-specific lung mechanics. To validate applied respiratory models a secondary measurement is required. Rotary encoder-based tape measures were designed to capture change in circumference of a subject's thorax and diaphragm. Circumferential changes can be correlated to measured or modelled change in lung volume and associated muscular recruitment measures (patient work of breathing). Hence, these simple measurement devices can expedite respiratory research, by adding low-cost, accessible, and clinically useful measurements.
    Language English
    Publishing date 2022-08-27
    Publishing country England
    Document type Journal Article
    ISSN 2468-0672
    ISSN (online) 2468-0672
    DOI 10.1016/j.ohx.2022.e00354
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: Increased insulin resistance in intensive care: longitudinal retrospective analysis of glycaemic control patients in a New Zealand ICU.

    Knopp, Jennifer L / Chase, J Geoffrey / Shaw, Geoffrey M

    Therapeutic advances in endocrinology and metabolism

    2021  Volume 12, Page(s) 20420188211012144

    Abstract: Background: Critical care populations experience demographic shifts in response to trends in population and healthcare, with increasing severity and/or complexity of illness a common observation worldwide. Inflammation in critical illness impacts ... ...

    Abstract Background: Critical care populations experience demographic shifts in response to trends in population and healthcare, with increasing severity and/or complexity of illness a common observation worldwide. Inflammation in critical illness impacts glucose-insulin metabolism, and hyperglycaemia is associated with mortality and morbidity. This study examines longitudinal trends in insulin sensitivity across almost a decade of glycaemic control in a single unit.
    Methods: A clinically validated model of glucose-insulin dynamics is used to assess hour-hour insulin sensitivity over the first 72 h of insulin therapy. Insulin sensitivity and its hour-hour percent variability are examined over 8 calendar years alongside severity scores and diagnostics.
    Results: Insulin sensitivity was found to decrease by 50-55% from 2011 to 2015, and remain low from 2015 to 2018, with no concomitant trends in age, severity scores or risk of death, or diagnostic category. Insulin sensitivity variability was found to remain largely unchanged year to year and was clinically equivalent (95% confidence interval) at the median and interquartile range. Insulin resistance was associated with greater incidence of high insulin doses in the effect saturation range (6-8 U/h), with the 75th percentile of hourly insulin doses rising from 4-4.5 U/h in 2011-2014 to 6 U/h in 2015-2018.
    Conclusions: Increasing insulin resistance was observed alongside no change in insulin sensitivity variability, implying greater insulin needs but equivalent (variability) challenge to glycaemic control. Increasing insulin resistance may imply greater inflammation and severity of illness not captured by existing severity scores. Insulin resistance reduces glucose tolerance, and can cause greater incidence of insulin saturation and resultant hyperglycaemia. Overall, these results have significant clinical implications for glycaemic control and nutrition management.
    Language English
    Publishing date 2021-05-31
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2554822-0
    ISSN 2042-0196 ; 2042-0188
    ISSN (online) 2042-0196
    ISSN 2042-0188
    DOI 10.1177/20420188211012144
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: The goldilocks problem: Nutrition and its impact on glycaemic control.

    Knopp, Jennifer L / Chase, J Geoffrey / Shaw, Geoffrey M

    Clinical nutrition (Edinburgh, Scotland)

    2021  Volume 40, Issue 6, Page(s) 3677–3687

    Abstract: Background: Glucose intolerance and insulin resistance manifest as hyperglycaemia in intensive care, which is associated with mortality and morbidities. Glycaemic control (GC) may improve outcomes, though safe and effective control has proven elusive. ... ...

    Abstract Background: Glucose intolerance and insulin resistance manifest as hyperglycaemia in intensive care, which is associated with mortality and morbidities. Glycaemic control (GC) may improve outcomes, though safe and effective control has proven elusive. Nutritional glucose intake affects blood glucose (BG) outcomes, but few protocols actively control it. This study aims to examine BG outcomes in the context of nutritional management during GC.
    Methods: Retrospective cohort analysis of 5 glycaemic control cohorts spanning 4 years (n = 273) from Christchurch Hospital Intensive Care Unit (ICU). GC is delivered using a single model-based protocol (STAR), with default 4.4-8.0 mmol/L target range via. modulation of insulin and nutrition. Clinical adaptations/cohorts include variations on upper target (UL-9 with 9.0 mmol/L, reducing workload and nutrition responsiveness), and insulin only (IO) with clinically set nutrition at 3 glucose concentrations (71 g/L vs. 120 and 180 g/L in the TARGET study).
    Results: Percent of BG hours in the 4.4-8.0 mmol/L range highest under standard STAR conditions (78%), and was lower at 64% under UL-9, likely due to reduced time-responsiveness of nutrition-insulin changes. By comparison, IO only resulted in 64-69% BG in range across different nutrition types. A subset of patients receiving high glucose nutrition under IO were persistently hyperglycaemic, indicating patient-specific glucose tolerance.
    Conclusion: STAR GC is most effective when nutrition and insulin are modulated together with timely responsiveness to persistent hyperglycaemia. Results imply modulation of nutrition alongside insulin improves GC, particularly in patients with persistent hyperglycaemia/low glucose tolerance.
    MeSH term(s) Aged ; Blood Glucose ; Clinical Studies as Topic ; Cohort Studies ; Critical Care ; Female ; Glycemic Control/methods ; Humans ; Hyperglycemia/prevention & control ; Insulin/administration & dosage ; Intensive Care Units ; Male ; Middle Aged ; Nutritional Status ; Nutritional Support/methods ; Outcome Assessment, Health Care ; Reference Values ; Retrospective Studies
    Chemical Substances Blood Glucose ; Insulin
    Language English
    Publishing date 2021-05-11
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 604812-2
    ISSN 1532-1983 ; 0261-5614
    ISSN (online) 1532-1983
    ISSN 0261-5614
    DOI 10.1016/j.clnu.2021.05.002
    Database MEDical Literature Analysis and Retrieval System OnLINE

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