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  1. Article ; Online: Unconventional Peptide Presentation by Classical MHC Class I and Implications for T and NK Cell Activation.

    Zajonc, Dirk M

    International journal of molecular sciences

    2020  Volume 21, Issue 20

    Abstract: T cell-mediated immune recognition of peptides is initiated upon binding of the antigen receptor on T cells (TCR) to the peptide-MHC complex. TCRs are typically restricted by a particular MHC allele, while polymorphism within the MHC molecule can affect ... ...

    Abstract T cell-mediated immune recognition of peptides is initiated upon binding of the antigen receptor on T cells (TCR) to the peptide-MHC complex. TCRs are typically restricted by a particular MHC allele, while polymorphism within the MHC molecule can affect the spectrum of peptides that are bound and presented to the TCR. Classical MHC Class I molecules have a confined binding groove that restricts the length of the presented peptides to typically 8-11 amino acids. Both N- and C-termini of the peptide are bound within binding pockets, allowing the TCR to dock in a diagonal orientation above the MHC-peptide complex. Longer peptides have been observed to bind either in a bulged or zig-zag orientation within the binding groove. More recently, unconventional peptide presentation has been reported for different MHC I molecules. Here, either N- or C-terminal amino acid additions to conventionally presented peptides induced a structural change either within the MHC I molecule that opened the confined binding groove or within the peptide itself, allowing the peptide ends to protrude into the solvent. Since both TCRs on T cells and killer immunoglobulin receptors on Natural Killer (NK) cells contact the MHC I molecule above or at the periphery of the peptide binding groove, unconventionally presented peptides could modulate both T cell and NK cell responses. We will highlight recent advances in our understanding of the functional consequences of unconventional peptide presentation in cellular immunity.
    MeSH term(s) Antigen Presentation ; Histocompatibility Antigens Class I/chemistry ; Histocompatibility Antigens Class I/immunology ; Humans ; Killer Cells, Natural/immunology ; Lymphocyte Activation ; Receptors, KIR/chemistry ; Receptors, KIR/immunology ; T-Lymphocytes/immunology
    Chemical Substances Histocompatibility Antigens Class I ; Receptors, KIR
    Language English
    Publishing date 2020-10-13
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2019364-6
    ISSN 1422-0067 ; 1422-0067 ; 1661-6596
    ISSN (online) 1422-0067
    ISSN 1422-0067 ; 1661-6596
    DOI 10.3390/ijms21207561
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Catching a complex for optimal signaling.

    Zajonc, Dirk M

    The Journal of biological chemistry

    2019  Volume 294, Issue 38, Page(s) 13887–13888

    Abstract: Agonistic antibodies are powerful tools to dimerize receptors in the absence of ligand binding, but high-fidelity receptor activation requires that these antibodies accurately recapitulate the native dimeric state. ... ...

    Abstract Agonistic antibodies are powerful tools to dimerize receptors in the absence of ligand binding, but high-fidelity receptor activation requires that these antibodies accurately recapitulate the native dimeric state. Spangler
    MeSH term(s) Dimerization ; Interleukin Receptor Common gamma Subunit ; Signal Transduction
    Chemical Substances Interleukin Receptor Common gamma Subunit
    Language English
    Publishing date 2019-09-20
    Publishing country United States
    Document type Journal Article ; Comment
    ZDB-ID 2997-x
    ISSN 1083-351X ; 0021-9258
    ISSN (online) 1083-351X
    ISSN 0021-9258
    DOI 10.1074/jbc.H119.010823
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Agonism of 4-1BB for immune therapy: a perspective on possibilities and complications.

    Salek-Ardakani, Shahram / Zajonc, Dirk M / Croft, Michael

    Frontiers in immunology

    2023  Volume 14, Page(s) 1228486

    Abstract: Costimulatory receptors on immune cells represent attractive targets for immunotherapy given that these molecules can increase the frequency of individual protective immune cell populations and their longevity, as well as enhance various effector ... ...

    Abstract Costimulatory receptors on immune cells represent attractive targets for immunotherapy given that these molecules can increase the frequency of individual protective immune cell populations and their longevity, as well as enhance various effector functions. 4-1BB, a member of the TNF receptor superfamily, also known as CD137 and TNFRSF9, is one such molecule that is inducible on several cell types, including T cells and NK cells. Preclinical studies in animal models have validated the notion that stimulating 4-1BB with agonist reagents or its natural ligand could be useful to augment conventional T cell and NK cell immunity to protect against tumor growth and against viral infection. Additionally, stimulating 4-1BB can enhance regulatory T cell function and might be useful in the right context for suppressing autoimmunity. Two human agonist antibodies to 4-1BB have been produced and tested in clinical trials for cancer, with variable results, leading to the production of a wealth of second-generation antibody constructs, including bi- and multi-specifics, with the hope of optimizing activity and selectivity. Here, we review the progress to date in agonism of 4-1BB, discuss the complications in targeting the immune system appropriately to elicit the desired activity, together with challenges in engineering agonists, and highlight the untapped potential of manipulating this molecule in infectious disease and autoimmunity.
    MeSH term(s) Animals ; Humans ; Immunotherapy ; Antibodies ; Autoimmunity ; Killer Cells, Natural ; Longevity
    Chemical Substances Antibodies
    Language English
    Publishing date 2023-08-17
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2606827-8
    ISSN 1664-3224 ; 1664-3224
    ISSN (online) 1664-3224
    ISSN 1664-3224
    DOI 10.3389/fimmu.2023.1228486
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: CD1c caves in on lipids.

    Zajonc, Dirk M

    Nature immunology

    2018  Volume 19, Issue 4, Page(s) 322–324

    MeSH term(s) Antigens, CD1 ; Lipids ; T-Lymphocytes
    Chemical Substances Antigens, CD1 ; Lipids
    Language English
    Publishing date 2018-03-22
    Publishing country United States
    Document type Journal Article ; Comment
    ZDB-ID 2016987-5
    ISSN 1529-2916 ; 1529-2908
    ISSN (online) 1529-2916
    ISSN 1529-2908
    DOI 10.1038/s41590-018-0074-6
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Unconventional Peptide Presentation by Classical MHC Class I and Implications for T and NK Cell Activation

    Dirk M. Zajonc

    International Journal of Molecular Sciences, Vol 21, Iss 7561, p

    2020  Volume 7561

    Abstract: T cell-mediated immune recognition of peptides is initiated upon binding of the antigen receptor on T cells (TCR) to the peptide-MHC complex. TCRs are typically restricted by a particular MHC allele, while polymorphism within the MHC molecule can affect ... ...

    Abstract T cell-mediated immune recognition of peptides is initiated upon binding of the antigen receptor on T cells (TCR) to the peptide-MHC complex. TCRs are typically restricted by a particular MHC allele, while polymorphism within the MHC molecule can affect the spectrum of peptides that are bound and presented to the TCR. Classical MHC Class I molecules have a confined binding groove that restricts the length of the presented peptides to typically 8–11 amino acids. Both N- and C-termini of the peptide are bound within binding pockets, allowing the TCR to dock in a diagonal orientation above the MHC-peptide complex. Longer peptides have been observed to bind either in a bulged or zig-zag orientation within the binding groove. More recently, unconventional peptide presentation has been reported for different MHC I molecules. Here, either N- or C-terminal amino acid additions to conventionally presented peptides induced a structural change either within the MHC I molecule that opened the confined binding groove or within the peptide itself, allowing the peptide ends to protrude into the solvent. Since both TCRs on T cells and killer immunoglobulin receptors on Natural Killer (NK) cells contact the MHC I molecule above or at the periphery of the peptide binding groove, unconventionally presented peptides could modulate both T cell and NK cell responses. We will highlight recent advances in our understanding of the functional consequences of unconventional peptide presentation in cellular immunity.
    Keywords MHC ; antigen presentation ; T cell activation ; NK cells ; killer immunoglobulin receptor ; Biology (General) ; QH301-705.5 ; Chemistry ; QD1-999
    Subject code 570
    Language English
    Publishing date 2020-10-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article: Antibody Recognition of Immunodominant Vaccinia Virus Envelope Proteins.

    Zajonc, Dirk M

    Sub-cellular biochemistry

    2017  Volume 83, Page(s) 103–126

    Abstract: Vaccinia Virus (VACV) is an enveloped double stranded DNA virus and the active ingredient of the smallpox vaccine. The systematic administration of this vaccine led to the eradication of circulating smallpox (variola virus, VARV) from the human ... ...

    Abstract Vaccinia Virus (VACV) is an enveloped double stranded DNA virus and the active ingredient of the smallpox vaccine. The systematic administration of this vaccine led to the eradication of circulating smallpox (variola virus, VARV) from the human population. As a tribute to its success, global immunization was ended in the late 1970s. The efficacy of the vaccine is attributed to a robust production of protective antibodies against several envelope proteins of VACV, which cross-protect against infection with pathogenic VARV. Since global vaccination was ended, most children and young adults do not possess immunity against smallpox. This is a concern, since smallpox is considered a potential bioweapon. Although the smallpox vaccine is considered the gold standard of all vaccines and the targeted antigens have been widely studied, the epitopes that are targeted by the protective antibodies and their mechanism of binding had been, until recently, poorly characterized. Understanding the precise interaction between the antibodies and their epitopes will be helpful in the design of better vaccines against other diseases. In this review we will discuss the structural basis of recognition of the immunodominant VACV antigens A27, A33, D8, and L1 by protective antibodies and discuss potential implications regarding their protective capacity.
    MeSH term(s) Antibodies, Viral/immunology ; Humans ; Immunodominant Epitopes/chemistry ; Immunodominant Epitopes/immunology ; Smallpox Vaccine/immunology ; Vaccinia virus/chemistry ; Vaccinia virus/immunology ; Viral Envelope Proteins/chemistry ; Viral Envelope Proteins/immunology
    Chemical Substances Antibodies, Viral ; Immunodominant Epitopes ; Smallpox Vaccine ; Viral Envelope Proteins
    Language English
    Publishing date 2017-03-07
    Publishing country United States
    Document type Journal Article ; Review
    ISSN 0306-0225 ; 0096-8757
    ISSN 0306-0225 ; 0096-8757
    DOI 10.1007/978-3-319-46503-6_4
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: The CD1 family: serving lipid antigens to T cells since the Mesozoic era.

    Zajonc, Dirk M

    Immunogenetics

    2016  Volume 68, Issue 8, Page(s) 561–576

    Abstract: Class I-like CD1 molecules are in a family of antigen-presenting molecules that bind lipids and lipopeptides, rather than peptides for immune surveillance by T cells. Since CD1 lacks the high degree of polymorphism found in their major histocompatibility ...

    Abstract Class I-like CD1 molecules are in a family of antigen-presenting molecules that bind lipids and lipopeptides, rather than peptides for immune surveillance by T cells. Since CD1 lacks the high degree of polymorphism found in their major histocompatibility complex (MHC) class I molecules, different species express different numbers of CD1 isotypes, likely to be able to present structurally diverse classes of lipid antigens. In this review, we will present a historical overview of the structures of the different human CD1 isotypes and also discuss species-specific adaptations of the lipid-binding groove. We will discuss how single amino acid changes alter the shape and volume of the CD1 binding groove, how these minor changes can give rise to different numbers of binding pockets, and how these pockets affect the lipid repertoire that can be presented by any given CD1 protein. We will compare the structures of various lipid antigens and finally, we will discuss recognition of CD1-presented lipid antigens by antigen receptors on T cells (TCRs).
    MeSH term(s) Amino Acid Sequence ; Animals ; Antigen Presentation ; Antigens, CD1/immunology ; Dinosaurs ; Histocompatibility Antigens Class I/immunology ; Humans ; Lipids/immunology ; Models, Molecular ; Receptors, Antigen, T-Cell/immunology ; Sequence Homology, Amino Acid ; T-Lymphocytes/immunology
    Chemical Substances Antigens, CD1 ; Histocompatibility Antigens Class I ; Lipids ; Receptors, Antigen, T-Cell
    Language English
    Publishing date 2016
    Publishing country United States
    Document type Journal Article ; Review ; Research Support, N.I.H., Extramural
    ZDB-ID 186560-2
    ISSN 1432-1211 ; 0093-7711
    ISSN (online) 1432-1211
    ISSN 0093-7711
    DOI 10.1007/s00251-016-0931-0
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: CD1, MR1, NKT, and MAIT: evolution and origins of non-peptidic antigen recognition by T lymphocytes.

    Zajonc, Dirk M / Flajnik, Martin F

    Immunogenetics

    2016  Volume 68, Issue 8, Page(s) 489–490

    Language English
    Publishing date 2016
    Publishing country United States
    Document type Editorial
    ZDB-ID 186560-2
    ISSN 1432-1211 ; 0093-7711
    ISSN (online) 1432-1211
    ISSN 0093-7711
    DOI 10.1007/s00251-016-0941-y
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: Single-cell transcriptomes and T cell receptors of vaccine-expanded apolipoprotein B-specific T cells.

    Nettersheim, Felix Sebastian / Ghosheh, Yanal / Winkels, Holger / Kobiyama, Kouji / Durant, Christopher / Armstrong, Sujit Silas / Brunel, Simon / Roy, Payel / Dileepan, Thamotharampillai / Jenkins, Marc K / Zajonc, Dirk M / Ley, Klaus

    Frontiers in cardiovascular medicine

    2023  Volume 9, Page(s) 1076808

    Abstract: Atherosclerotic cardiovascular diseases are the major cause of death worldwide. CD4 T cells responding to Apolipoprotein B (ApoB), the core protein of most lipoproteins, have been identified as critical disease modulators. In healthy individuals, ApoB- ... ...

    Abstract Atherosclerotic cardiovascular diseases are the major cause of death worldwide. CD4 T cells responding to Apolipoprotein B (ApoB), the core protein of most lipoproteins, have been identified as critical disease modulators. In healthy individuals, ApoB-reactive (ApoB
    Language English
    Publishing date 2023-01-05
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2781496-8
    ISSN 2297-055X
    ISSN 2297-055X
    DOI 10.3389/fcvm.2022.1076808
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article: Recognition of Microbial Glycolipids by Natural Killer T Cells.

    Zajonc, Dirk M / Girardi, Enrico

    Frontiers in immunology

    2015  Volume 6, Page(s) 400

    Abstract: T cells can recognize microbial antigens when presented by dedicated antigen-presenting molecules. While peptides are presented by classical members of the major histocompatibility complex (MHC) family (MHC I and II), lipids, glycolipids, and ... ...

    Abstract T cells can recognize microbial antigens when presented by dedicated antigen-presenting molecules. While peptides are presented by classical members of the major histocompatibility complex (MHC) family (MHC I and II), lipids, glycolipids, and lipopeptides can be presented by the non-classical MHC member, CD1. The best studied subset of lipid-reactive T cells are type I natural killer T (iNKT) cells that recognize a variety of different antigens when presented by the non-classical MHCI homolog CD1d. iNKT cells have been shown to be important for the protection against various microbial pathogens, including B. burgdorferi, the causative agents of Lyme disease, and S. pneumoniae, which causes pneumococcal meningitis and community-acquired pneumonia. Both pathogens carry microbial glycolipids that can trigger the T cell antigen receptor (TCR), leading to iNKT cell activation. iNKT cells have an evolutionary conserved TCR alpha chain, yet retain the ability to recognize structurally diverse glycolipids. They do so using a conserved recognition mode, in which the TCR enforces a conserved binding orientation on CD1d. TCR binding is accompanied by structural changes within the TCR binding site of CD1d, as well as the glycolipid antigen itself. In addition to direct recognition of microbial antigens, iNKT cells can also be activated by a combination of cytokines (IL-12/IL-18) and TCR stimulation. Many microbes carry TLR antigens, and microbial infections can lead to TLR activation. The subsequent cytokine response in turn lower the threshold of TCR-mediated iNKT cell activation, especially when weak microbial or even self-antigens are presented during the cause of the infection. In summary, iNKT cells can be directly activated through TCR triggering of strong antigens, while cytokines produced by the innate immune response may be necessary for TCR triggering and iNKT cell activation in the presence of weak antigens. Here, we will review the molecular basis of iNKT cell recognition of glycolipids, with an emphasis on microbial glycolipids.
    Language English
    Publishing date 2015
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2606827-8
    ISSN 1664-3224
    ISSN 1664-3224
    DOI 10.3389/fimmu.2015.00400
    Database MEDical Literature Analysis and Retrieval System OnLINE

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