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  1. Article ; Online: Cowpox to COVID: History of vaccination in the immunocompromised host.

    Schaenman, Joanna / Avery, Robin

    Transplant infectious disease : an official journal of the Transplantation Society

    2023  Volume 25, Issue 3, Page(s) e14051

    Abstract: Background: The use of vaccination to prevent infection has a long history, starting in the 1700s with Jenner. New innovations have led to improvements in the safety and efficacy of vaccines, from live attenuated viruses to subunit vaccines, to RNA- ... ...

    Abstract Background: The use of vaccination to prevent infection has a long history, starting in the 1700s with Jenner. New innovations have led to improvements in the safety and efficacy of vaccines, from live attenuated viruses to subunit vaccines, to RNA-based vaccination for SARS-CoV-2. Despite this progress, however, solid organ transplant (SOT) recipients on immunosuppression demonstrate an impaired vaccine response compared with healthy controls. This issue is important given the increased vulnerability to infection in immunocompromised patients, especially in the setting of the Coronavirus Disease 2019 (COVID-19) pandemic.
    Methods: We reviewed the literature on key topics in vaccination with significant clinical impact on SOT patients.
    Results: Prior to COVID-19, a large amount of data has been published demonstrating impaired humoral and T-cell responses to multiple vaccinations targeting influenza, hepatitis B, VZV, and Pneumococcus. Poor immunogenicity can be addressed through the use of adjuvants to boost the immune response, even in the setting of senescence related to age or immunosuppression. New vaccines provide hope for preventing infection due to hepatitis C and Cytomegalovirus, and to the emerging infection, monkeypox. The data on the impact of the COVID-19 vaccine in SOT patients is reviewed, with a focus on seroconversion, antibody titer, and antigen-specific T cells. Factors associated with impaired response, including mycophenolate, are described.
    Conclusion: The history of vaccination demonstrates how scientific breakthroughs can be applied to clinical challenges. New approaches using adjuvants, strategic antigen selection, and RNA-based vaccines offer the potential to improve immune response in SOT recipients. Future innovations are needed to better protect the vulnerable immunocompromised host.
    MeSH term(s) Animals ; Humans ; Cowpox ; Organ Transplantation/adverse effects ; COVID-19 Vaccines ; COVID-19/prevention & control ; SARS-CoV-2 ; Vaccination ; Influenza Vaccines ; Adjuvants, Immunologic ; Immunocompromised Host ; Antibodies, Viral
    Chemical Substances COVID-19 Vaccines ; Influenza Vaccines ; Adjuvants, Immunologic ; Antibodies, Viral
    Language English
    Publishing date 2023-04-07
    Publishing country Denmark
    Document type Journal Article ; Review
    ZDB-ID 1476094-0
    ISSN 1399-3062 ; 1398-2273
    ISSN (online) 1399-3062
    ISSN 1398-2273
    DOI 10.1111/tid.14051
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: COVID-19, a UK perspective.

    Avery, Joanna / Bloom, Benjamin

    European journal of emergency medicine : official journal of the European Society for Emergency Medicine

    2020  Volume 27, Issue 3, Page(s) 156–157

    MeSH term(s) Betacoronavirus ; COVID-19 ; Coronavirus Infections/epidemiology ; Emergency Service, Hospital ; Humans ; Pandemics ; Pneumonia, Viral/epidemiology ; SARS-CoV-2 ; United Kingdom/epidemiology
    Keywords covid19
    Language English
    Publishing date 2020-03-26
    Publishing country England
    Document type Journal Article
    ZDB-ID 1233544-7
    ISSN 1473-5695 ; 0969-9546
    ISSN (online) 1473-5695
    ISSN 0969-9546
    DOI 10.1097/MEJ.0000000000000700
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: COVID-19, a UK perspective ;

    Avery, Joanna / Bloom, Benjamin

    European Journal of Emergency Medicine

    2020  Volume 27, Issue 3, Page(s) 156–157

    Keywords Emergency Medicine ; covid19
    Language English
    Publisher Ovid Technologies (Wolters Kluwer Health)
    Publishing country us
    Document type Article ; Online
    ZDB-ID 1233544-7
    ISSN 0969-9546
    ISSN 0969-9546
    DOI 10.1097/mej.0000000000000700
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  4. Article ; Online: An automated respiratory data pipeline for waveform characteristic analysis.

    Lusk, Savannah / Ward, Christopher S / Chang, Andersen / Twitchell-Heyne, Avery / Fattig, Shaun / Allen, Genevera / Jankowsky, Joanna L / Ray, Russell S

    The Journal of physiology

    2023  Volume 601, Issue 21, Page(s) 4767–4806

    Abstract: Comprehensive and accurate analysis of respiratory and metabolic data is crucial to modelling congenital, pathogenic and degenerative diseases converging on autonomic control failure. A lack of tools for high-throughput analysis of respiratory datasets ... ...

    Abstract Comprehensive and accurate analysis of respiratory and metabolic data is crucial to modelling congenital, pathogenic and degenerative diseases converging on autonomic control failure. A lack of tools for high-throughput analysis of respiratory datasets remains a major challenge. We present Breathe Easy, a novel open-source pipeline for processing raw recordings and associated metadata into operative outcomes, publication-worthy graphs and robust statistical analyses including QQ and residual plots for assumption queries and data transformations. This pipeline uses a facile graphical user interface for uploading data files, setting waveform feature thresholds and defining experimental variables. Breathe Easy was validated against manual selection by experts, which represents the current standard in the field. We demonstrate Breathe Easy's utility by examining a 2-year longitudinal study of an Alzheimer's disease mouse model to assess contributions of forebrain pathology in disordered breathing. Whole body plethysmography has become an important experimental outcome measure for a variety of diseases with primary and secondary respiratory indications. Respiratory dysfunction, while not an initial symptom in many of these disorders, often drives disability or death in patient outcomes. Breathe Easy provides an open-source respiratory analysis tool for all respiratory datasets and represents a necessary improvement upon current analytical methods in the field. KEY POINTS: Respiratory dysfunction is a common endpoint for disability and mortality in many disorders throughout life. Whole body plethysmography in rodents represents a high face-value method for measuring respiratory outcomes in rodent models of these diseases and disorders. Analysis of key respiratory variables remains hindered by manual annotation and analysis that leads to low throughput results that often exclude a majority of the recorded data. Here we present a software suite, Breathe Easy, that automates the process of data selection from raw recordings derived from plethysmography experiments and the analysis of these data into operative outcomes and publication-worthy graphs with statistics. We validate Breathe Easy with a terabyte-scale Alzheimer's dataset that examines the effects of forebrain pathology on respiratory function over 2 years of degeneration.
    MeSH term(s) Animals ; Mice ; Humans ; Longitudinal Studies ; Software ; Respiration ; Plethysmography
    Language English
    Publishing date 2023-10-03
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, U.S. Gov't, Non-P.H.S. ; Research Support, Non-U.S. Gov't
    ZDB-ID 3115-x
    ISSN 1469-7793 ; 0022-3751
    ISSN (online) 1469-7793
    ISSN 0022-3751
    DOI 10.1113/JP284363
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Duration of Antibiotic Therapy in Necrotizing Soft Tissue Infections: Shorter is Safe.

    Terzian, W T Hillman / Nunn, Andrew M / Call, Erika B / Bliss, Sara E / Swinarska, Joanna T / Rigdon, Joseph / Avery, Martin D / Hoth, J Jason / Miller, Preston R

    Surgical infections

    2022  Volume 23, Issue 5, Page(s) 430–435

    Abstract: Background: ...

    Abstract Background:
    MeSH term(s) Anti-Bacterial Agents/therapeutic use ; Debridement ; Fasciitis, Necrotizing ; Hospitalization ; Humans ; Prospective Studies ; Retrospective Studies ; Soft Tissue Infections/epidemiology
    Chemical Substances Anti-Bacterial Agents
    Language English
    Publishing date 2022-04-22
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1440120-4
    ISSN 1557-8674 ; 1096-2964
    ISSN (online) 1557-8674
    ISSN 1096-2964
    DOI 10.1089/sur.2022.011
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Double trouble or a silver lining? A case report of two patients with NPM1-mutated donor-derived acute myeloid leukemia (AML).

    Loh, Joanna Bao Ern / Walker, Patricia / Avery, Sharon / Patil, Sushrut / Spencer, Andrew / Wei, Andrew / Fleming, Shaun

    Leukemia & lymphoma

    2020  Volume 62, Issue 2, Page(s) 489–491

    MeSH term(s) Humans ; Leukemia, Myeloid, Acute/diagnosis ; Leukemia, Myeloid, Acute/genetics ; Mutation ; Nuclear Proteins/genetics ; Tissue Donors
    Chemical Substances Nuclear Proteins
    Language English
    Publishing date 2020-10-13
    Publishing country United States
    Document type Case Reports ; Letter
    ZDB-ID 1042374-6
    ISSN 1029-2403 ; 1042-8194
    ISSN (online) 1029-2403
    ISSN 1042-8194
    DOI 10.1080/10428194.2020.1832663
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Experiences and impact of living with incontinence associated stigma: A protocol for a systematic review and narrative synthesis of qualitative studies.

    Murphy, Cathy / Avery, Miriam / Macaulay, Margaret / Fader, Mandy

    PloS one

    2022  Volume 17, Issue 7, Page(s) e0270885

    Abstract: ... articles will be reviewed. An adapted Joanna Briggs Institute Data Extraction Form will be used ... to collect the data and quality will be assessed using the Joanna Briggs Institute checklist for qualitative research ...

    Abstract Introduction: Incontinence is global health and social issue, with urinary incontinence alone affecting over 400 million people. Incontinence can lead to physical harms such as skin damage, but it also commonly causes social and psychological harms, including those associated with stigma. For many people, treatment to cure incontinence does not work or is not suitable and they live with the long-term consequences of incontinence. At the moment, no stigma reduction interventions (increasingly used with other conditions such as mental health problems and HIV) have been developed for people living with incontinence. As a starting point for developing such an intervention, this review will address the questions 1) What are the incontinence (urinary or faecal) associated experiences of stigma of people living with incontinence? 2) What is the impact of incontinence associated stigma on their lives?
    Methods: The reviewers will search Embase, Medline, PsychINFO and the Cumulative Index to Nursing and Allied Health Literature using controlled vocabulary and relevant search terms. Articles assessed to meet inclusion criteria will be included. Once duplicates have been removed, titles and abstracts will be screened and full texts of selected research articles will be reviewed. An adapted Joanna Briggs Institute Data Extraction Form will be used to collect the data and quality will be assessed using the Joanna Briggs Institute checklist for qualitative research appraisal tool. A framework approach (using the Revised Framework for Understanding Non-communicable Disease Related Stigma) will be used to organise, integrate, interpret and summarise findings from included articles. The review will be reported in accordance with the Enhancing Transparency in reporting the synthesis of qualitative research statement. Prospero registration number CRD42021259065.
    Discussion: The systematic review described in this protocol will provide the first in-depth, comprehensive understanding of people's experiences of the stigma associated with incontinence and the impact that it has on their lives. It will identify broader influences of contextual variables such as age, sex, cause and type of incontinence, socio-economic culture and geographical location. The review aims to provide insights to support the development of incontinence associated stigma reduction interventions.
    MeSH term(s) Delivery of Health Care ; Humans ; Narration ; Qualitative Research ; Review Literature as Topic ; Social Stigma ; Urinary Incontinence
    Language English
    Publishing date 2022-07-08
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2267670-3
    ISSN 1932-6203 ; 1932-6203
    ISSN (online) 1932-6203
    ISSN 1932-6203
    DOI 10.1371/journal.pone.0270885
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Infliximab Pricing in International Economic Evaluations in Inflammatory Bowel Disease to Inform Biologic and Biosimilar Access Policies

    Naazish S. Bashir / Avery Hughes / Wendy J. Ungar

    MDM Policy & Practice, Vol

    A Systematic Review

    2023  Volume 8

    Abstract: ... Embase, Healthstar, Allied and Complementary Medicine, Joanna Briggs Institute EBP Database ...

    Abstract Background. Policies mandating the use of lower cost biosimilars in patients with inflammatory bowel disease (IBD) have created concerns for patients who prefer their original biologic. Purpose. To inform the cost-effectiveness of biosimilar infliximab treatment in IBD by systematically reviewing the effect of infliximab price variation on cost-effectiveness for jurisdictional decision making. Data Sources. MEDLINE, Embase, Healthstar, Allied and Complementary Medicine, Joanna Briggs Institute EBP Database, International Pharmaceutical Abstracts, Health and Psychosocial Instruments, Mental Measurements Yearbook citation databases, PEDE, CEA registry, HTA agencies. Study Selection. Economic evaluations of infliximab for adult or pediatric Crohn’s disease and/or ulcerative colitis published from 1998 through 2019 in which drug price was varied in sensitivity analysis were included. Data Extraction. Study characteristics, main findings, and results of drug price sensitivity analyses were extracted. Studies were critically appraised. The cost-effective price of infliximab was determined based on the stated willingness-to-pay (WTP) thresholds for each jurisdiction. Data Synthesis. Infliximab price was examined in sensitivity analysis in 31 studies. Infliximab showed favorable cost-effectiveness at a price ranging from CAD $66 to $1,260 per vial, depending on jurisdiction. A total of 18 analyses (43%) demonstrated cost-effectiveness ratios above the jurisdictional WTP threshold. Limitations. Drug prices were not always reported separately, WTP thresholds varied, and funding sources were not consistently reported. Conclusion. Despite the high cost of infliximab, few economic evaluations examined price variation, limiting the ability to infer the effects of biosimilar introduction. Alternative pricing strategies and access to treatment could be considered to enable IBD patients to maintain access to their current medications. Highlights In an effort to reduce public drug expenditures, Canadian and other jurisdictional ...
    Keywords Medicine (General) ; R5-920
    Subject code 303
    Language English
    Publishing date 2023-02-01T00:00:00Z
    Publisher SAGE Publishing
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article ; Online: Correction: Methodology for clinical genotyping of CYP2D6 and CYP2C19.

    Henriques, Beatriz Carvalho / Buchner, Avery / Hu, Xiuying / Wang, Yabing / Yavorskyy, Vasyl / Wallace, Keanna / Dong, Rachael / Martens, Kristina / Carr, Michael S / Asl, Bahareh Behroozi / Hague, Joshua / Sivapalan, Sudhakar / Maier, Wolfgang / Dernovsek, Mojca Z / Henigsberg, Neven / Hauser, Joanna / Souery, Daniel / Cattaneo, Annamaria / Mors, Ole /
    Rietschel, Marcella / Pfeffer, Gerald / Hume, Stacey / Aitchison, Katherine J

    Translational psychiatry

    2022  Volume 12, Issue 1, Page(s) 94

    Language English
    Publishing date 2022-03-08
    Publishing country United States
    Document type Published Erratum
    ZDB-ID 2609311-X
    ISSN 2158-3188 ; 2158-3188
    ISSN (online) 2158-3188
    ISSN 2158-3188
    DOI 10.1038/s41398-022-01845-w
    Database MEDical Literature Analysis and Retrieval System OnLINE

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