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  1. Article: Systematic reinstatement of highly sacred

    Mahima, Karthikeyan / Umapathy, Senthilkumar / Sudhakar, Jana Venkata / Sathishkumar, Ramalingam

    PhytoKeys

    2021  Volume 186, Page(s) 121–138

    Abstract: ... ...

    Abstract Ficuskrishnae
    Language English
    Publishing date 2021-12-09
    Publishing country Bulgaria
    Document type Journal Article
    ZDB-ID 2579891-1
    ISSN 1314-2003 ; 1314-2011
    ISSN (online) 1314-2003
    ISSN 1314-2011
    DOI 10.3897/phytokeys.186.74086
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Functional role of microRNA in the regulation of biotic and abiotic stress in agronomic plants.

    Samynathan, Ramkumar / Venkidasamy, Baskar / Shanmugam, Ashokraj / Ramalingam, Sathishkumar / Thiruvengadam, Muthu

    Frontiers in genetics

    2023  Volume 14, Page(s) 1272446

    Abstract: The increasing demand for food is the result of an increasing population. It is crucial to enhance crop yield for sustainable production. Recently, microRNAs (miRNAs) have gained importance because of their involvement in crop productivity by regulating ... ...

    Abstract The increasing demand for food is the result of an increasing population. It is crucial to enhance crop yield for sustainable production. Recently, microRNAs (miRNAs) have gained importance because of their involvement in crop productivity by regulating gene transcription in numerous biological processes, such as growth, development and abiotic and biotic stresses. miRNAs are small, non-coding RNA involved in numerous other biological functions in a plant that range from genomic integrity, metabolism, growth, and development to environmental stress response, which collectively influence the agronomic traits of the crop species. Additionally, miRNA families associated with various agronomic properties are conserved across diverse plant species. The miRNA adaptive responses enhance the plants to survive environmental stresses, such as drought, salinity, cold, and heat conditions, as well as biotic stresses, such as pathogens and insect pests. Thus, understanding the detailed mechanism of the potential response of miRNAs during stress response is necessary to promote the agronomic traits of crops. In this review, we updated the details of the functional aspects of miRNAs as potential regulators of various stress-related responses in agronomic plants.
    Language English
    Publishing date 2023-10-10
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2606823-0
    ISSN 1664-8021
    ISSN 1664-8021
    DOI 10.3389/fgene.2023.1272446
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Artificial intelligence-driven systems engineering for next-generation plant-derived biopharmaceuticals.

    Parthiban, Subramanian / Vijeesh, Thandarvalli / Gayathri, Thashanamoorthi / Shanmugaraj, Balamurugan / Sharma, Ashutosh / Sathishkumar, Ramalingam

    Frontiers in plant science

    2023  Volume 14, Page(s) 1252166

    Abstract: Recombinant biopharmaceuticals including antigens, antibodies, hormones, cytokines, single-chain variable fragments, and peptides have been used as vaccines, diagnostics and therapeutics. Plant molecular pharming is a robust platform that uses plants as ... ...

    Abstract Recombinant biopharmaceuticals including antigens, antibodies, hormones, cytokines, single-chain variable fragments, and peptides have been used as vaccines, diagnostics and therapeutics. Plant molecular pharming is a robust platform that uses plants as an expression system to produce simple and complex recombinant biopharmaceuticals on a large scale. Plant system has several advantages over other host systems such as humanized expression, glycosylation, scalability, reduced risk of human or animal pathogenic contaminants, rapid and cost-effective production. Despite many advantages, the expression of recombinant proteins in plant system is hindered by some factors such as non-human post-translational modifications, protein misfolding, conformation changes and instability. Artificial intelligence (AI) plays a vital role in various fields of biotechnology and in the aspect of plant molecular pharming, a significant increase in yield and stability can be achieved with the intervention of AI-based multi-approach to overcome the hindrance factors. Current limitations of plant-based recombinant biopharmaceutical production can be circumvented with the aid of synthetic biology tools and AI algorithms in plant-based glycan engineering for protein folding, stability, viability, catalytic activity and organelle targeting. The AI models, including but not limited to, neural network, support vector machines, linear regression, Gaussian process and regressor ensemble, work by predicting the training and experimental data sets to design and validate the protein structures thereby optimizing properties such as thermostability, catalytic activity, antibody affinity, and protein folding. This review focuses on, integrating systems engineering approaches and AI-based machine learning and deep learning algorithms in protein engineering and host engineering to augment protein production in plant systems to meet the ever-expanding therapeutics market.
    Language English
    Publishing date 2023-11-15
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2613694-6
    ISSN 1664-462X
    ISSN 1664-462X
    DOI 10.3389/fpls.2023.1252166
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Molecular phylogeny of the

    Mahima, Karthikeyan / Sudhakar, Jana Venkata / Sathishkumar, Ramalingam

    Genome

    2020  Volume 63, Issue 12, Page(s) 597–606

    Abstract: The closely related species present in the subgenera ... ...

    Abstract The closely related species present in the subgenera of
    MeSH term(s) Biological Evolution ; DNA, Plant/genetics ; Ficus/anatomy & histology ; Ficus/classification ; Ficus/genetics ; Genetic Markers ; Phenotype ; Phylogeny ; Plant Leaves ; Sequence Analysis, DNA ; Species Specificity
    Chemical Substances DNA, Plant ; Genetic Markers
    Language English
    Publishing date 2020-08-21
    Publishing country Canada
    Document type Journal Article
    ZDB-ID 639031-6
    ISSN 1480-3321 ; 0831-2796
    ISSN (online) 1480-3321
    ISSN 0831-2796
    DOI 10.1139/gen-2019-0210
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Clostridium Difficile and Noncirrhotic Hyperammonnemia in a Patient With COVID-19 Infection.

    Ramalingam, Sathishkumar / Gunasekaran, Kulothungan / Arora, Harkesh / Muruganandam, Maheswari / Padmanabhan, Priyesh

    Cureus

    2021  Volume 13, Issue 4, Page(s) e14533

    Abstract: Clostridium ... ...

    Abstract Clostridium difficile
    Language English
    Publishing date 2021-04-17
    Publishing country United States
    Document type Case Reports
    ZDB-ID 2747273-5
    ISSN 2168-8184
    ISSN 2168-8184
    DOI 10.7759/cureus.14533
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Production of Genistein in

    Malla, Ashwini / Shanmugaraj, Balamurugan / Sharma, Ashutosh / Ramalingam, Sathishkumar

    Plants (Basel, Switzerland)

    2021  Volume 10, Issue 11

    Abstract: Isoflavonoids, the diverse group of secondary metabolites derived from the phenylpropanoid pathway, are distributed predominantly in leguminous plants. It has received considerable attention in recent days due to its health promoting benefits and is ... ...

    Abstract Isoflavonoids, the diverse group of secondary metabolites derived from the phenylpropanoid pathway, are distributed predominantly in leguminous plants. It has received considerable attention in recent days due to its health promoting benefits and is known to prevent certain diseases in humans. These isoflavonoids are synthesized from flavonoid intermediates of phenylpropanoid pathway by the enzyme isoflavone synthase. Metabolic engineering of isoflavonoid biosynthesis in non-legume crop plants could offer the health benefits of these compounds in diverse plant species further contributing for crop improvement. The transient expression of heterologous genes in the host is considered as an alternative to stable expression, that can provide a rapid way of studying the pathway engineering for metabolite production and could also act as a production platform for nutraceuticals and biopharmaceuticals. In this study, isoflavone genistein was produced in
    Language English
    Publishing date 2021-10-27
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2704341-1
    ISSN 2223-7747
    ISSN 2223-7747
    DOI 10.3390/plants10112311
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: Advancements and future prospective of DNA barcodes in the herbal drug industry.

    Mahima, Karthikeyan / Sunil Kumar, Koppala Narayana / Rakhesh, Kanakarajan Vijayakumari / Rajeswaran, Parameswaran Sathiya / Sharma, Ashutosh / Sathishkumar, Ramalingam

    Frontiers in pharmacology

    2022  Volume 13, Page(s) 947512

    Abstract: Ethnopharmacological relevance: ...

    Abstract Ethnopharmacological relevance:
    Language English
    Publishing date 2022-10-21
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2587355-6
    ISSN 1663-9812
    ISSN 1663-9812
    DOI 10.3389/fphar.2022.947512
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article: Isolation of 5' regulatory region of

    Mohanan, Manoj Vadakkenchery / Pushpanathan, Anunanthini / Jayanarayanan, Ashwin Narayan / Selvarajan, Dharshini / Ramalingam, Sathishkumar / Govind, Hemaprabha / Chinnaswamy, Appunu

    3 Biotech

    2023  Volume 13, Issue 7, Page(s) 228

    Abstract: Chilling Tolerant Divergence 1 (: Supplementary information: The online version contains supplementary material available at 10.1007/s13205-023-03650-8. ...

    Abstract Chilling Tolerant Divergence 1 (
    Supplementary information: The online version contains supplementary material available at 10.1007/s13205-023-03650-8.
    Language English
    Publishing date 2023-06-09
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 2600522-0
    ISSN 2190-5738 ; 2190-572X
    ISSN (online) 2190-5738
    ISSN 2190-572X
    DOI 10.1007/s13205-023-03650-8
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: Plant Metabolic Gene Clusters: Evolution, Organization, and Their Applications in Synthetic Biology.

    Bharadwaj, Revuru / Kumar, Sarma R / Sharma, Ashutosh / Sathishkumar, Ramalingam

    Frontiers in plant science

    2021  Volume 12, Page(s) 697318

    Abstract: Plants are a remarkable source of high-value specialized metabolites having significant physiological and ecological functions. Genes responsible for synthesizing specialized metabolites are often clustered together for a coordinated expression, which is ...

    Abstract Plants are a remarkable source of high-value specialized metabolites having significant physiological and ecological functions. Genes responsible for synthesizing specialized metabolites are often clustered together for a coordinated expression, which is commonly observed in bacteria and filamentous fungi. Similar to prokaryotic gene clustering, plants do have gene clusters encoding enzymes involved in the biosynthesis of specialized metabolites. More than 20 gene clusters involved in the biosynthesis of diverse metabolites have been identified across the plant kingdom. Recent studies demonstrate that gene clusters are evolved through gene duplications and neofunctionalization of primary metabolic pathway genes. Often, these clusters are tightly regulated at nucleosome level. The prevalence of gene clusters related to specialized metabolites offers an attractive possibility of an untapped source of highly useful biomolecules. Accordingly, the identification and functional characterization of novel biosynthetic pathways in plants need to be worked out. In this review, we summarize insights into the evolution of gene clusters and discuss the organization and importance of specific gene clusters in the biosynthesis of specialized metabolites. Regulatory mechanisms which operate in some of the important gene clusters have also been briefly described. Finally, we highlight the importance of gene clusters to develop future metabolic engineering or synthetic biology strategies for the heterologous production of novel metabolites.
    Language English
    Publishing date 2021-08-13
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2613694-6
    ISSN 1664-462X
    ISSN 1664-462X
    DOI 10.3389/fpls.2021.697318
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article: Disseminated Nocardia infection-A rare presentation.

    Arora, Harkesh / Ramalingam, Sathishkumar / Sanghavi, Rajvee / Balogun, Adedayo / Muruganandam, Maheshwari

    Clinical case reports

    2021  Volume 9, Issue 8, Page(s) e04673

    Abstract: Nocardia infection is rare and requires early diagnosis, extended use of sulfonamides for good prognosis, and prevention of recurrence. It is crucial to suspect nocardiosis in cases of atypical pneumonias or unexplained visceral organ dysfunction. ...

    Abstract Nocardia infection is rare and requires early diagnosis, extended use of sulfonamides for good prognosis, and prevention of recurrence. It is crucial to suspect nocardiosis in cases of atypical pneumonias or unexplained visceral organ dysfunction.
    Language English
    Publishing date 2021-08-21
    Publishing country England
    Document type Case Reports
    ZDB-ID 2740234-4
    ISSN 2050-0904
    ISSN 2050-0904
    DOI 10.1002/ccr3.4673
    Database MEDical Literature Analysis and Retrieval System OnLINE

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