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Article ; Online: Catechin Derivatives as Inhibitor of COVID-19 Main Protease (Mpro): Molecular Docking Studies Unveil an Opportunity Against CORONA.

Arif, Muhammad Nouman

Combinatorial chemistry & high throughput screening

2020 Volume 25, Issue 1, Page(s) 197–203

Abstract: Background: A newly emergent strain of coronavirus (COVID-19) has affected almost the whole of the world's population. Currently, there is no specific vaccine or drug against COVID-19. Xu et al. (2020) built a homolog model of SARS-CoV-2 Mpro based on ... ...

Abstract	Background: A newly emergent strain of coronavirus (COVID-19) has affected almost the whole of the world's population. Currently, there is no specific vaccine or drug against COVID-19. Xu et al. (2020) built a homolog model of SARS-CoV-2 Mpro based on SARS-CoV Mpro, which is considered as a target to inhibit the replication of CoV. Objective: The aim of the current study was to find potential inhibitors of COVID-19 Mpro using docking analysis. Methods: Autodockvina was used to carry out Protein-Ligand docking. COVID-19 main protease Mpro was docked with catechin and its different synthetic derivatives. Nelfinavir, an antiretroviral drug belonging to protease inhibitors, was taken as the standard. Results: According to the result obtained, it was found that Compound (4) and Compound (1) have more affinity than nelfinavir. Conclusion: Compounds were found to have a great potential to become COVID-19 main protease Mpro inhibitor. Nevertheless, for their medicinal use, further investigation is necessary.
MeSH term(s)	Antiviral Agents/pharmacology ; COVID-19 ; Catechin/pharmacology ; Coronavirus 3C Proteases/antagonists & inhibitors ; Humans ; Molecular Docking Simulation ; Protease Inhibitors/pharmacology ; SARS-CoV-2/drug effects
Chemical Substances	Antiviral Agents ; Protease Inhibitors ; Catechin (8R1V1STN48) ; 3C-like proteinase, SARS-CoV-2 (EC 3.4.22.-) ; Coronavirus 3C Proteases (EC 3.4.22.28)
Language	English
Publishing date	2020-11-24
Publishing country	United Arab Emirates
Document type	Journal Article
ZDB-ID	2064785-2
ISSN	1875-5402 ; 1386-2073
ISSN (online)	1875-5402
ISSN	1386-2073
DOI	10.2174/1871520620666201123101002
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Article ; Online: Assessing the impact of technological innovation on technically derived energy efficiency: a multivariate co-integration analysis of the agricultural sector in South Asia

Khan, Dilawar / Nouman, Muhammad / Ullah, Arif

Environ Dev Sustain. 2023 Apr., v. 25, no. 4 p.3723-3745

2023

Abstract: The increased demand for energy in agriculture raised the cost of production and hence caused greenhouse gas emissions. Therefore, improving energy efficiency is essential to decrease energy demand and, consequently, reduce costs and reduce greenhouse ... ...

Abstract	The increased demand for energy in agriculture raised the cost of production and hence caused greenhouse gas emissions. Therefore, improving energy efficiency is essential to decrease energy demand and, consequently, reduce costs and reduce greenhouse gas emissions. The objective of this study was to compute energy efficiency and assess the influence of technological innovation on technically computed energy efficiency of the agricultural sector in South Asia. A two-stage analysis was carried out using panel data over the period 2002–2019. First, energy efficiency was computed employing the stochastic frontier analysis (SFA) approach. Second, the influence of technological innovation on technically derived energy efficiency was examined employing a system generalized method of moments (GMM) approach. Findings of the SFA approach show that the average energy efficiency of the South Asian agricultural sector was 84%, ranging from 79 to 86%, showing that there is still 16% room for improvements in energy efficiency of the agriculture in South Asia. In addition, this study found that India has relatively high energy efficiency (86%) compared to other countries in South Asia. The study also found that energy efficiency shows a slight upward trend in the agricultural sector in South Asia. The findings of the system GMM revealed that technological innovation is playing a significant role in improving energy efficiency of the agricultural sector in South Asia. Based on our findings, South Asia can reduce energy inefficiency by spending more on research and development (R&D) in the agricultural sector.
Keywords	agricultural industry ; econometric models ; energy efficiency ; greenhouse gases ; production costs ; research and development ; technology ; time series analysis ; India
Language	English
Dates of publication	2023-04
Size	p. 3723-3745.
Publishing place	Springer Netherlands
Document type	Article ; Online
ZDB-ID	1438730-x
ISSN	1387-585X
ISSN	1387-585X
DOI	10.1007/s10668-022-02194-w
Database	NAL-Catalogue (AGRICOLA)

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Book ; Online: New trends in radiology education, time to adapt locally

Khan, Faheem Ullah / Khan, Nouman / Saeed, Muhammad Arif

Department of Radiology

2020

Keywords	Radiology ; Residency ; Education ; Medical ; COVID-19 ; Medical Education ; covid19
Publishing date	2020-05-01T07:00:00Z
Publisher	eCommons@AKU
Publishing country	pk
Document type	Book ; Online
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Article ; Online: Mapping CircRNA–miRNA–mRNA regulatory axis identifies hsa_circ_0080942 and hsa_circ_0080135 as a potential theranostic agents for SARS-CoV-2 infection

Hassan Ayaz / Nouman Aslam / Faryal Mehwish Awan / Rabea Basri / Bisma Rauff / Badr Alzahrani / Muhammad Arif / Aqsa Ikram / Ayesha Obaid / Anam Naz / Sadiq Noor Khan / Burton B. Yang / Azhar Nazir

PLoS ONE, Vol 18, Iss

2023 Volume 4

Abstract: Non-coding RNAs (ncRNAs) can control the flux of genetic information; affect RNA stability and play crucial roles in mediating epigenetic modifications. A number of studies have highlighted the potential roles of both virus-encoded and host-encoded ... ...

Abstract	Non-coding RNAs (ncRNAs) can control the flux of genetic information; affect RNA stability and play crucial roles in mediating epigenetic modifications. A number of studies have highlighted the potential roles of both virus-encoded and host-encoded ncRNAs in viral infections, transmission and therapeutics. However, the role of an emerging type of non-coding transcript, circular RNA (circRNA) in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection has not been fully elucidated so far. Moreover, the potential pathogenic role of circRNA-miRNA-mRNA regulatory axis has not been fully explored as yet. The current study aimed to holistically map the regulatory networks driven by SARS-CoV-2 related circRNAs, miRNAs and mRNAs to uncover plausible interactions and interplay amongst them in order to explore possible therapeutic options in SARS-CoV-2 infection. Patient datasets were analyzed systematically in a unified approach to explore circRNA, miRNA, and mRNA expression profiles. CircRNA-miRNA-mRNA network was constructed based on cytokine storm related circRNAs forming a total of 165 circRNA-miRNA-mRNA pairs. This study implies the potential regulatory role of the obtained circRNA-miRNA-mRNA network and proposes that two differentially expressed circRNAs hsa_circ_0080942 and hsa_circ_0080135 might serve as a potential theranostic agents for SARS-CoV-2 infection. Collectively, the results shed light on the functional role of circRNAs as ceRNAs to sponge miRNA and regulate mRNA expression during SARS-CoV-2 infection.
Keywords	Medicine ; R ; Science ; Q
Subject code	570
Language	English
Publishing date	2023-01-01T00:00:00Z
Publisher	Public Library of Science (PLoS)
Document type	Article ; Online
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Article ; Online: Mapping CircRNA-miRNA-mRNA regulatory axis identifies hsa_circ_0080942 and hsa_circ_0080135 as a potential theranostic agents for SARS-CoV-2 infection.

Hassan Ayaz / Nouman Aslam / Faryal Mehwish Awan / Rabea Basri / Bisma Rauff / Badr Alzahrani / Muhammad Arif / Aqsa Ikram / Ayesha Obaid / Anam Naz / Sadiq Noor Khan / Burton B Yang / Azhar Nazir

PLoS ONE, Vol 18, Iss 4, p e

2023 Volume 0283589

Abstract	Non-coding RNAs (ncRNAs) can control the flux of genetic information; affect RNA stability and play crucial roles in mediating epigenetic modifications. A number of studies have highlighted the potential roles of both virus-encoded and host-encoded ncRNAs in viral infections, transmission and therapeutics. However, the role of an emerging type of non-coding transcript, circular RNA (circRNA) in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection has not been fully elucidated so far. Moreover, the potential pathogenic role of circRNA-miRNA-mRNA regulatory axis has not been fully explored as yet. The current study aimed to holistically map the regulatory networks driven by SARS-CoV-2 related circRNAs, miRNAs and mRNAs to uncover plausible interactions and interplay amongst them in order to explore possible therapeutic options in SARS-CoV-2 infection. Patient datasets were analyzed systematically in a unified approach to explore circRNA, miRNA, and mRNA expression profiles. CircRNA-miRNA-mRNA network was constructed based on cytokine storm related circRNAs forming a total of 165 circRNA-miRNA-mRNA pairs. This study implies the potential regulatory role of the obtained circRNA-miRNA-mRNA network and proposes that two differentially expressed circRNAs hsa_circ_0080942 and hsa_circ_0080135 might serve as a potential theranostic agents for SARS-CoV-2 infection. Collectively, the results shed light on the functional role of circRNAs as ceRNAs to sponge miRNA and regulate mRNA expression during SARS-CoV-2 infection.
Keywords	Medicine ; R ; Science ; Q
Subject code	570
Language	English
Publishing date	2023-01-01T00:00:00Z
Publisher	Public Library of Science (PLoS)
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article ; Online: Mapping CircRNA-miRNA-mRNA regulatory axis identifies hsa_circ_0080942 and hsa_circ_0080135 as a potential theranostic agents for SARS-CoV-2 infection.

Ayaz, Hassan / Aslam, Nouman / Awan, Faryal Mehwish / Basri, Rabea / Rauff, Bisma / Alzahrani, Badr / Arif, Muhammad / Ikram, Aqsa / Obaid, Ayesha / Naz, Anam / Khan, Sadiq Noor / Yang, Burton B / Nazir, Azhar

PloS one

2023 Volume 18, Issue 4, Page(s) e0283589

Abstract	Non-coding RNAs (ncRNAs) can control the flux of genetic information; affect RNA stability and play crucial roles in mediating epigenetic modifications. A number of studies have highlighted the potential roles of both virus-encoded and host-encoded ncRNAs in viral infections, transmission and therapeutics. However, the role of an emerging type of non-coding transcript, circular RNA (circRNA) in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection has not been fully elucidated so far. Moreover, the potential pathogenic role of circRNA-miRNA-mRNA regulatory axis has not been fully explored as yet. The current study aimed to holistically map the regulatory networks driven by SARS-CoV-2 related circRNAs, miRNAs and mRNAs to uncover plausible interactions and interplay amongst them in order to explore possible therapeutic options in SARS-CoV-2 infection. Patient datasets were analyzed systematically in a unified approach to explore circRNA, miRNA, and mRNA expression profiles. CircRNA-miRNA-mRNA network was constructed based on cytokine storm related circRNAs forming a total of 165 circRNA-miRNA-mRNA pairs. This study implies the potential regulatory role of the obtained circRNA-miRNA-mRNA network and proposes that two differentially expressed circRNAs hsa_circ_0080942 and hsa_circ_0080135 might serve as a potential theranostic agents for SARS-CoV-2 infection. Collectively, the results shed light on the functional role of circRNAs as ceRNAs to sponge miRNA and regulate mRNA expression during SARS-CoV-2 infection.
MeSH term(s)	Humans ; MicroRNAs/genetics ; MicroRNAs/metabolism ; RNA, Circular/genetics ; RNA, Messenger/genetics ; RNA, Messenger/metabolism ; Precision Medicine ; COVID-19/genetics ; SARS-CoV-2/genetics
Chemical Substances	MicroRNAs ; RNA, Circular ; RNA, Messenger
Language	English
Publishing date	2023-04-13
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2267670-3
ISSN	1932-6203 ; 1932-6203
ISSN (online)	1932-6203
ISSN	1932-6203
DOI	10.1371/journal.pone.0283589
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Article: Impact of rhizobial inoculum and inorganic fertilizers on nutrients (NPK) availability and uptake in wheat crop

Adnan, Muhammad / Inayat-ur-Rahman / Abdul Basir / Hidayat Ullah / Ishaq Ahmad Mian / Muhammad Arif / Muhammad Jamal Khan / Muhammad Sharif / Mukhtar Alam / Nouman Saleem / Zahir Shah

Canadian journal of soil science. 2016 Mar. 30, v. 96, no. 2

2016

Abstract: Experiments were conducted to evaluate the effect of rhizobial inoculums and inorganic fertilizers on NP availability, soil microbial activity, wheat NPK concentration and uptake. These experiments were consisted of two factors, four inoculums (no, ... ...

Abstract	Experiments were conducted to evaluate the effect of rhizobial inoculums and inorganic fertilizers on NP availability, soil microbial activity, wheat NPK concentration and uptake. These experiments were consisted of two factors, four inoculums (no, lentil, peas, and chickpeas) and two NPK doses (120:90:60 and 96:72:48 kg haâ»Â¹). Inoculums significantly increased plant total NPK concentration by 39, 57, and 37%, and their uptake by 66, 86, and 56%, respectively. Peas inoculum was most efficient in wheat NPK concentration and uptake. The interactive effect of inoculums and NPK demonstrated that peas and lentil inoculums with 20% less NPK had statistically better role than full NPK without inoculation. AB-DTPA extractible P and mineral N were progressively increased with incubation periods and exhibited significant differences between inoculated and uninoculated treatments during all incubation intervals for NP except at day 7 for N. Peas inoculum showed maximum mean net NP availability of 131.5 and 3.48 mg kgâ»Â¹ over 56Â d of incubation, respectively. Significantly higher cumulative COâ of 1429 mg kgâ»Â¹ with a net increase of 866Â mg kgâ»Â¹ was recorded for peaâs inoculums during 12Â d of incubation interval. It is concluded that peas rhizobium could be used as a plant-growth-promoting rhizobacteria for wheat and other cereal crops.
Keywords	carbon dioxide ; chickpeas ; grain crops ; inoculum ; lentils ; microbial activity ; mineral fertilizers ; nitrogen ; nutrients ; peas ; plant growth-promoting rhizobacteria ; Rhizobium ; soil ; wheat
Language	English
Dates of publication	2016-0330
Size	p. 169-176.
Publishing place	Canadian Science Publishing
Document type	Article
ZDB-ID	417254-1
ISSN	1918-1841 ; 0008-4271
ISSN (online)	1918-1841
ISSN	0008-4271
DOI	10.1139/cjss-2016-0012
Database	NAL-Catalogue (AGRICOLA)

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Article ; Online: Recent trends in molecular epidemiology of Hepatitis C virus in Mardan, KPK Pakistan.

Wahid, Braira / Waqar, Muhammad / Rasool, Nouman / Rehman, Zobaria / Saeed, Jamaluddin / Wasim, Muhammad / Khan, Muhammad Arif / Ali, Amjad / Rafique, Shazia / Sajjad / Idrees, Muhammad

Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases

2018 Volume 66, Page(s) 66–71

Abstract: To determine the genotypic distribution of HCV, frequency of risk factors involved in its transmission, and correlation of genotype with viral load in Mardan population which is the second largest city of Khyber Pakhtunkhwa (KPK), Pakistan. Blood samples ...

Abstract	To determine the genotypic distribution of HCV, frequency of risk factors involved in its transmission, and correlation of genotype with viral load in Mardan population which is the second largest city of Khyber Pakhtunkhwa (KPK), Pakistan. Blood samples of 1140 were collected from different regions of Mardan and major proportion of recruited patients were internally displaced people (IDPs), refugees, and slum dwellers. Complete patient's history was analyzed to assess the possible risks involved in HCV transmission. Viral genotype was determined by PCR (polymerase chain reaction) whereas, HCV RNA was measured by qRT-PCR. Data was analyzed using SPSS statistical software. Our results indicate 3a as the most abundant subtype in Mardan population followed by 3b, 2a, 2b, 4a, untypeable, mixed, 1a, and 1b. In contrast to previous findings, genotype 1 was the least prevalent genotype and the overall prevalence of HCV in Mardan population was significantly higher in females (n = 687, 60.2%) than males (n = 453, 39.7%). Significant difference between-genotypes and gender was observed in genotype 1 (p < .034) and genotype 3 (p < .004). The mean age was 44 (SD ± 9.51). The most frequently found mixed genotype was 3a + 1b and mixed genotype was more prevalent in males. The proportion of middle-aged people (41-49 years) was higher whereas, older and younger people were least infected with HCV. This is the first study that showed substantial correlation of genotype 3 with low and intermediate viral load in Mardan population. Moreover, high and extremely high viral load was associated with other genotypes. Our findings showed that most of the patients who experienced high and extremely high viremia in their blood were males and belonged to Takhat Bhai and Mardaan regions. There were significant difference in the prevalence of HCV genotype 3a (p = .001) and genotype 3b (p = .005) in different regions of Mardan. Pre-treatment viral load is significantly high (p 0.001) in tehsil Mardan patients infected with HCV genotype 3 as compared to other genotypes. Unsafe medical practices such as medical and dental surgeries, intravenous drug use, and blood transfusions were the main risk factors for HCV transmission in Mardan, KPK Pakistan. This study gives clear insights into the epidemiological status of HCV in Mardan population. Genotype 3 is correlated with low and intermediate viral load whereas high viral loads were revealed among patients infected with genotypes other than genotype 3. In the absence of better data and robust epidemiological information, this detailed analysis of HCV genotypes with special reference to risk factors, pretreatment viral load, gender, and age will provide the baseline data for development of optimal HCV eradication and preventive strategies.
MeSH term(s)	Adolescent ; Adult ; Aged ; Child ; Female ; Genotype ; Hepacivirus/genetics ; Hepatitis C/epidemiology ; Hepatitis C/virology ; Humans ; Male ; Middle Aged ; Molecular Epidemiology ; Pakistan/epidemiology ; Viral Load ; Young Adult
Language	English
Publishing date	2018-09-08
Publishing country	Netherlands
Document type	Journal Article
ZDB-ID	2037068-4
ISSN	1567-7257 ; 1567-1348
ISSN (online)	1567-7257
ISSN	1567-1348
DOI	10.1016/j.meegid.2018.09.003
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Article: Management for Agricultural, Forestry, and Urban Uses. Impact of rhizobial inoculum and inorganic fertilizers on nutrients (NPK) availability and uptake in wheat crop

Adnan, Muhammad / Shah, Zahir / Arif, Muhammad / Khan, Muhammad Jamal / Mian, Ishaq Ahmad / Sharif, Muhammad / Alam, Mukhtar / Basir, Abdul / Ullah, Hidayat / Inayat-ur-Rahman / Saleem, Nouman

Canadian journal of soil science

2016 Volume 96, Issue 2, Page(s) 169–176

Language	English
Document type	Article
ZDB-ID	417254-1
ISSN	0008-4271
Database	Current Contents Nutrition, Environment, Agriculture

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Article ; Online: Renal artery stenosis: to intervene, or not to intervene, "that is the question".

Haqqie, Syed S / Nappi, Anthony / Siskin, Gary / Syed, Nouman A / Ghate, Ketan / Mathew, Roy O / Wang, Jeffrey / Sidhu, Mandeep S / Kumar, Vishesh / Salman, Loay / Merrill, Donna / Akmal, Muhammad U T / Nayer, Ali / Asif, Arif

Seminars in dialysis

2014 Volume 27, Issue 1, Page(s) E4–7

Abstract: Renal artery stenosis (RAS) due to atherosclerosis continues to be a major cause of secondary hypertension. It can also lead to renal dysfunction due to ischemic nephropathy. While major clinical trials have emphasized that medical management should be ... ...

Abstract	Renal artery stenosis (RAS) due to atherosclerosis continues to be a major cause of secondary hypertension. It can also lead to renal dysfunction due to ischemic nephropathy. While major clinical trials have emphasized that medical management should be preferred over angioplasty and stenting for the treatment of renal artery stenosis, clinical scenarios continue to raise doubts about the optimal management strategy. Herein, we present two cases that were admitted with hypertensive emergency and renal function deterioration. Medical therapy failed to control the blood pressure and in one patient, renal failure progressed to a point where renal replacement therapy was required. Both patients underwent angioplasty (for >90% stenosis) and stent insertion with successful resolution of stenosis by interventional radiology. Postoperatively, blood pressure gradually decreased with improvement in serum creatinine. Dialysis therapy was discontinued. At 4- and 8-month follow-up, both patients continue to do well with blood pressure readings in the 132-145/70-90 mmHg range. This article highlights the importance of percutaneous interventions in the management of atherosclerotic RAS and calls for heightened awareness and careful identification of candidates who would benefit from angioplasty and stent insertion.
MeSH term(s)	Acute Kidney Injury/etiology ; Acute Kidney Injury/therapy ; Angioplasty ; Atherosclerosis/complications ; Female ; Humans ; Hypertension, Renovascular/etiology ; Hypertension, Renovascular/therapy ; Male ; Middle Aged ; Radiography ; Renal Artery/diagnostic imaging ; Renal Artery Obstruction/complications ; Renal Artery Obstruction/etiology ; Renal Artery Obstruction/therapy ; Renal Replacement Therapy ; Stents
Language	English
Publishing date	2014-01
Publishing country	United States
Document type	Case Reports ; Journal Article
ZDB-ID	1028193-9
ISSN	1525-139X ; 0894-0959
ISSN (online)	1525-139X
ISSN	0894-0959
DOI	10.1111/sdi.12140
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