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  1. Article ; Online: Mapping and characterization of G-quadruplexes in monkeypox genomes.

    Pereira, Higor Sette / Gemmill, Darren L / Siddiqui, M Quadir / Vasudeva, Gunjan / Patel, Trushar R

    Journal of medical virology

    2023  Volume 95, Issue 5, Page(s) e28783

    Abstract: ... health outcomes. G-quadruplexes have been a target of interest in treating viral infections ... the G-quadruplex formation using circular dichroism spectroscopy and solution small-angle X-ray ... that a quadruplex binding small-molecule with previously reported antiviral activity, TMPyP4, interacts with MPXV G ...

    Abstract Monkeypox virus (MPXV) is a double-stranded DNA virus from the family Poxviridae, which is endemic in West and Central Africa. Various human outbreaks occurred in the 1980s, resulting from a cessation of smallpox vaccination. Recently, MPXV cases have reemerged in non-endemic nations, and the 2022 outbreak has been declared a public health emergency. Treatment optionsare limited, and many countries lack the infrastructure to provide symptomatic treatments. The development of cost-effective antivirals could ease severe health outcomes. G-quadruplexes have been a target of interest in treating viral infections with different chemicals. In the present work, a genomic-scale mapping of different MPXV isolates highlighted two conserved putative quadruplex-forming sequences MPXV-exclusive in 590 isolates. Subsequently, we assessed the G-quadruplex formation using circular dichroism spectroscopy and solution small-angle X-ray scattering. Furthermore, biochemical assays indicated the ability of MPXV quadruplexes to be recognized by two specific G4-binding partners-Thioflavin T and DHX36. Additionally, our work also suggests that a quadruplex binding small-molecule with previously reported antiviral activity, TMPyP4, interacts with MPXV G-quadruplexes with nanomolar affinity in the presence and absence of DHX36. Finally, cell biology experiments suggests that TMPyP4 treatment substantially reduced gene expression of MPXV proteins. In summary, our work provides insights into the G-quadruplexes from the MPXV genome that can be further exploited to develop therapeutics.
    MeSH term(s) Monkeypox virus/genetics ; G-Quadruplexes/drug effects ; Mpox (monkeypox)/virology ; Genome, Viral ; Scattering, Small Angle ; X-Ray Diffraction ; Antiviral Agents/pharmacology ; Porphyrins/pharmacology ; Enzyme Inhibitors/pharmacology
    Chemical Substances tetra(4-N-methylpyridyl)porphine (38673-65-3) ; Antiviral Agents ; Porphyrins ; Enzyme Inhibitors
    Language English
    Publishing date 2023-05-04
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 752392-0
    ISSN 1096-9071 ; 0146-6615
    ISSN (online) 1096-9071
    ISSN 0146-6615
    DOI 10.1002/jmv.28783
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Effective Interfacing of Surface Homojunctions on Chemically Identical g-C

    Das, Sankar / Ng, Li Shiuan / Chong, Carice / Pereira, Veronica / Li, Haitao / Lee, Chi-Lik Ken / Lee, Hiang Kwee

    Small (Weinheim an der Bergstrasse, Germany)

    2024  , Page(s) e2400780

    Abstract: Developing efficient homojunctions on g-C ...

    Abstract Developing efficient homojunctions on g-C
    Language English
    Publishing date 2024-03-30
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 2168935-0
    ISSN 1613-6829 ; 1613-6810
    ISSN (online) 1613-6829
    ISSN 1613-6810
    DOI 10.1002/smll.202400780
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  3. Article ; Online: Serum starvation is as efficient as roscovitine on the cycle synchronization in G

    Praxedes, Érika Almeida / Oliveira, Lhara Ricarliany Medeiros de / da Silva Viana, João Vitor / Rodrigues, Luanna Lorenna Vieira / de Brito Vieira Neto, José / Sales, Sarah Leyenne Alves / Dos Santos Luciano, Maria Claudia / Oliveira, Moacir Franco de / Pessoa, Cláudia / Pereira, Alexsandra Fernandes

    In vitro cellular & developmental biology. Animal

    2024  Volume 60, Issue 3, Page(s) 249–257

    Abstract: Fibroblast cycle synchronization in G ...

    Abstract Fibroblast cycle synchronization in G
    MeSH term(s) Animals ; Roscovitine/pharmacology ; Dasyproctidae ; Purines/pharmacology ; Cell Cycle ; Fibroblasts ; Cells, Cultured
    Chemical Substances Roscovitine (0ES1C2KQ94) ; Purines
    Language English
    Publishing date 2024-03-01
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 1077810-x
    ISSN 1543-706X ; 0883-8364 ; 1071-2690
    ISSN (online) 1543-706X
    ISSN 0883-8364 ; 1071-2690
    DOI 10.1007/s11626-024-00866-7
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  4. Article ; Online: Motixafortide and G-CSF to mobilize hematopoietic stem cells for autologous transplantation in multiple myeloma: a randomized phase 3 trial.

    Crees, Zachary D / Rettig, Michael P / Jayasinghe, Reyka G / Stockerl-Goldstein, Keith / Larson, Sarah M / Arpad, Illes / Milone, Giulio A / Martino, Massimo / Stiff, Patrick / Sborov, Douglas / Pereira, Denise / Micallef, Ivana / Moreno-Jiménez, Gemma / Mikala, Gabor / Coronel, Maria Liz Paciello / Holtick, Udo / Hiemenz, John / Qazilbash, Muzaffar H / Hardy, Nancy /
    Latif, Tahir / García-Cadenas, Irene / Vainstein-Haras, Abi / Sorani, Ella / Gliko-Kabir, Irit / Goldstein, Inbal / Ickowicz, Debby / Shemesh-Darvish, Liron / Kadosh, Shaul / Gao, Feng / Schroeder, Mark A / Vij, Ravi / DiPersio, John F

    Nature medicine

    2023  Volume 29, Issue 4, Page(s) 869–879

    Abstract: Autologous hematopoietic stem cell transplantation (ASCT) improves survival in multiple myeloma (MM). However, many individuals are unable to collect optimal ... ...

    Abstract Autologous hematopoietic stem cell transplantation (ASCT) improves survival in multiple myeloma (MM). However, many individuals are unable to collect optimal CD34
    MeSH term(s) Adult ; Humans ; Multiple Myeloma/drug therapy ; Transplantation, Autologous ; Prospective Studies ; Heterocyclic Compounds/pharmacology ; Heterocyclic Compounds/therapeutic use ; Hematopoietic Stem Cell Mobilization/methods ; Hematopoietic Stem Cell Transplantation/adverse effects ; Hematopoietic Stem Cells/metabolism ; Antigens, CD34/metabolism ; Granulocyte Colony-Stimulating Factor/pharmacology ; Granulocyte Colony-Stimulating Factor/therapeutic use ; Immunologic Factors/therapeutic use
    Chemical Substances Heterocyclic Compounds ; Antigens, CD34 ; Granulocyte Colony-Stimulating Factor (143011-72-7) ; Immunologic Factors
    Language English
    Publishing date 2023-04-17
    Publishing country United States
    Document type Clinical Trial, Phase III ; Randomized Controlled Trial ; Multicenter Study ; Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 1220066-9
    ISSN 1546-170X ; 1078-8956
    ISSN (online) 1546-170X
    ISSN 1078-8956
    DOI 10.1038/s41591-023-02273-z
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  5. Article ; Online: Hydrolysis effects on the water uptake of starch-g-glycidyl methacrylate (

    Pellá, Michelly Cristina Galdioli / Simão, Andressa Renatta / Pereira, Guilherme Miranda / Rubira, Adley Forti

    International journal of biological macromolecules

    2023  Volume 253, Issue Pt 8, Page(s) 127654

    Abstract: This work assessed the effect of different hydrolysis periods on the properties of hydrogels based on 75 % w ... ...

    Abstract This work assessed the effect of different hydrolysis periods on the properties of hydrogels based on 75 % w w
    MeSH term(s) Hydrogels ; Water ; Starch ; Hydrolysis
    Chemical Substances glycidyl methacrylate (R8WN29J8VF) ; Hydrogels ; Water (059QF0KO0R) ; Starch (9005-25-8)
    Language English
    Publishing date 2023-10-24
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 282732-3
    ISSN 1879-0003 ; 0141-8130
    ISSN (online) 1879-0003
    ISSN 0141-8130
    DOI 10.1016/j.ijbiomac.2023.127654
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  6. Article ; Online: A comparative study of starch-g-(glycidyl methacrylate)/synthetic polymer-based hydrogels.

    Pellá, Michelly Cristina Galdioli / Simão, Andressa Renatta / Mauricio, Marcos Roberto / Estrada, Ruben Auccaise / Pereira, Guilherme Miranda / da Silva, Rafael / Rubira, Adley Forti

    Carbohydrate polymers

    2023  Volume 307, Page(s) 120614

    Abstract: ... GMA; starch-g-GMA; ...

    Abstract Chemical modification reactions and blending formation are two alternatives used to improve the properties of starch-based materials. This work used both approaches to evaluate how they would affect the properties of hydrogels. The hydrogels were based on corn starch (St), modified with glycidyl methacrylate (GMA; starch-g-GMA;
    Language English
    Publishing date 2023-01-26
    Publishing country England
    Document type Journal Article
    ZDB-ID 1501516-6
    ISSN 1879-1344 ; 0144-8617
    ISSN (online) 1879-1344
    ISSN 0144-8617
    DOI 10.1016/j.carbpol.2023.120614
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  7. Article ; Online: Association of TAP1 1177A>G and 2090A>G gene polymorphisms with latent tuberculosis infections in sheltered populations, in the metropolitan area of Guadalajara, Mexico: a pilot study.

    Cazarez-Navarro, Gerardo / Palomares-Marín, Jaime / Rodríguez-Preciado, Sergio Yair / Pereira-Suárez, Ana Laura / Martínez-López, Erika / Bacilio-Medrano, Eva Adriana / Huerta-Olvera, Selene / Hernández-Cañaveral, Iván Isidro

    Revista do Instituto de Medicina Tropical de Sao Paulo

    2021  Volume 63, Page(s) e55

    Abstract: ... aimed to determine the association between TAP1 gene 1177A>G (rs1057141) and 2090A>G (rs1135216 ... analyzed (46 were LTBI-positive and 92 were controls). Genotyping of the rs11352216 (2090A>G) and rs1057141 ... 1177A>G) gene IDs was performed using the Applied Biosystems Step One Thermal Cycler Real-Time PCR ...

    Abstract Latent tuberculosis infection (LTBI) is a condition that has no clinical signs and symptoms. LTBI patients are characterized by persistent immune responses to Mycobacterium tuberculosis, and approximately 5-10% of these infected individuals will develop active TB at some point in their lives. The antigen transporter associated with antigen processing (TAP1) is a protein involved in the transport of the antigen from the cytoplasm to the endoplasmic reticulum by means of the association with MHC class I molecules. It plays a fundamental role in the immune response, promoting the clearance of intracellular pathogens. Our pilot study aimed to determine the association between TAP1 gene 1177A>G (rs1057141) and 2090A>G (rs1135216) genetic polymorphisms with susceptibility to LTBI. In this case-control study, 153 individuals from shelters were analyzed (46 were LTBI-positive and 92 were controls). Genotyping of the rs11352216 (2090A>G) and rs1057141 (1177A>G) gene IDs was performed using the Applied Biosystems Step One Thermal Cycler Real-Time PCR allelic discrimination technology. The haplotypic analyses were performed with the Arlequin 3.5 program. Social assistance centers and shelters that serve vulnerable populations represent high-risk sites due to overcrowding and the impaired nutritional status of their residents. The G allele (OR=1.99, CI=1.109-3.587, p=0.021) and the GG genotype of rs11352216 (A>G) were associated with susceptibility to LTBI, according to the codominant genetic model (OR=8.32, CI=1.722-61.98, p=0.007). The rs1057141 (A>G) polymorphism was not associated with LTBI risk. The results suggest that carriers of the G allele of rs1135216 (A>G) are susceptible to LTBI.
    MeSH term(s) ATP Binding Cassette Transporter, Subfamily B, Member 2/genetics ; Case-Control Studies ; Genetic Predisposition to Disease ; Humans ; Latent Tuberculosis/genetics ; Mexico ; Mycobacterium tuberculosis ; Pilot Projects ; Polymorphism, Single Nucleotide
    Chemical Substances ATP Binding Cassette Transporter, Subfamily B, Member 2 ; TAP1 protein, human
    Language English
    Publishing date 2021-07-05
    Publishing country Brazil
    Document type Journal Article
    ZDB-ID 128928-7
    ISSN 1678-9946 ; 0036-4665
    ISSN (online) 1678-9946
    ISSN 0036-4665
    DOI 10.1590/S1678-9946202163055
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  8. Article ; Online: Conservation and divergence of the G-interfaces of Drosophila melanogaster septins.

    de Freitas Fernandes, Adriano / Leonardo, Diego Antonio / Cavini, Italo Augusto / Rosa, Higor Vinícius Dias / Vargas, Jhon Antoni / D'Muniz Pereira, Humberto / Nascimento, Alessandro S / Garratt, Richard Charles

    Cytoskeleton (Hoboken, N.J.)

    2023  Volume 80, Issue 7-8, Page(s) 153–168

    Abstract: Septins possess a conserved guanine nucleotide-binding (G) domain that participates ... Sep5 and Pnut. Here, we report the crystal structure of the heterodimer formed between the G-domains ... of Sep1 and Sep2, the first from an insect to be described to date. A G-interface stabilizes the dimer ...

    Abstract Septins possess a conserved guanine nucleotide-binding (G) domain that participates in the stabilization of organized hetero-oligomeric complexes which assemble into filaments, rings and network-like structures. The fruit fly, Drosophila melanogaster, has five such septin genes encoding Sep1, Sep2, Sep4, Sep5 and Pnut. Here, we report the crystal structure of the heterodimer formed between the G-domains of Sep1 and Sep2, the first from an insect to be described to date. A G-interface stabilizes the dimer (in agreement with the expected arrangement for the Drosophila hexameric particle) and this bears significant resemblance to its human counterparts, even down to the level of individual amino acid interactions. On the other hand, a model for the G-interface formed between the two copies of Pnut which occupy the centre of the hexamer, shows important structural differences, including the loss of a highly favourable bifurcated salt-bridge network. Whereas wild-type Pnut purifies as a monomer, the reintroduction of the salt-bridge network results in stabilizing the dimeric interface in solution as shown by size exclusion chromatography and thermal stability measurements. Adaptive steered molecular dynamics reveals an unzipping mechanism for dimer dissociation which initiates at a point of electrostatic repulsion within the switch II region. Overall, the data contribute to a better understanding of the molecular interactions involved in septin assembly/disassembly.
    Language English
    Publishing date 2023-01-03
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2534372-5
    ISSN 1949-3592 ; 1949-3584
    ISSN (online) 1949-3592
    ISSN 1949-3584
    DOI 10.1002/cm.21740
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  9. Article ; Online: Full confluency, serum starvation, and roscovitine for inducing arrest in the G

    Rodrigues, Luanna Lorenna Vieira / Moura, Yasmin Beatriz França / Viana, João Vitor da Silva / de Oliveira, Lhara Ricarliany Medeiros / Praxedes, Érika Almeida / Vieira, José de Brito / Sales, Sarah Leyenne Alves / Silva, Herlon Victor Rodrigues / Luciano, Maria Claudia Dos Santos / Pessoa, Claudia / Pereira, Alexsandra Fernandes

    Animal reproduction

    2023  Volume 20, Issue 1, Page(s) e20230017

    Abstract: ... serum starvation (0.5% serum), and roscovitine (15 µM) treatments on the cell cycle synchronization in G ...

    Abstract The puma population is constantly decreasing, and cloning by somatic cell nuclear transfer can be used to conserve the species. One of the factors determining the success of the development of cloned embryos is the cell cycle stage of the donor cells. We evaluated the effects of full confluency (~100%), serum starvation (0.5% serum), and roscovitine (15 µM) treatments on the cell cycle synchronization in G
    Language English
    Publishing date 2023-04-21
    Publishing country Brazil
    Document type Journal Article
    ZDB-ID 2227229-X
    ISSN 1984-3143 ; 1984-3143
    ISSN (online) 1984-3143
    ISSN 1984-3143
    DOI 10.1590/1984-3143-AR2023-0017
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  10. Article ; Online: The role of tumor necrosis factor alpha - 308A > G polymorphism on the clinical states of SARS-CoV-2 infection.

    Sotomayor-Lugo, Francisco / Alemañy-Díaz Perera, Claudia / Roblejo-Balbuena, Hilda / Zúñiga-Rosales, Yaíma / Monzón-Benítez, Giselle / Suárez-Besil, Beatriz / González-Torres, María de Los Ángeles / Torres-Rives, Bárbara / Álvarez-Gavilán, Yudelmis / Bravo-Ramírez, Maidalys / Pereira-Roche, Nayade / Benítez-Cordero, Yudelkis / Silva-Ayçaguer, Luis Carlos / Marcheco-Teruel, Beatriz

    The Egyptian journal of medical human genetics

    2022  Volume 23, Issue 1, Page(s) 55

    Abstract: ... on its transcriptional activity. These include the - 308A > G polymorphism which increases the TNFα levels with the expression ... of the A allele. The aim of this study was to explore whether the TNFα.- 308A > G polymorphism affects ... the genotype of the TNFα.- 308A > G polymorphism.: Results: Results show a higher tendency of being ...

    Abstract Background: Tumor necrosis factor-alpha (TNFɑ) is a cytokine that manages the host defense mechanism, which may play a role in the pathogenesis of COVID-19 patients. Several single-nucleotide polymorphisms, described in the promoter region of the TNFα gene, have a significant role on its transcriptional activity. These include the - 308A > G polymorphism which increases the TNFα levels with the expression of the A allele. The aim of this study was to explore whether the TNFα.- 308A > G polymorphism affects the clinical state of COVID-19 patients. The study included a total of 1028 individuals infected with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), which were distributed in 3 groups: asymptomatic, mild symptomatic and severe symptomatic patients. The amplification-refractory mutation system was used to determine the genotype of the TNFα.- 308A > G polymorphism.
    Results: Results show a higher tendency of being asymptomatic in individuals carrying the GG genotype (336 of 411; OR 1.24, 95% CI 0.91-1.70). The development of a severe form of SARS-CoV-2 infection was not found in subjects with the A allele compared to those with the G allele (OR 0.96, 95% CI 0.51-1.79), except in the eastern region of the country where the risk increased (OR 4.41, 95% CI 1.14-17.05). However, the subjects carrying the A allele had a higher chance of developing symptoms (OR 1.24, 95% CI 0.91-1.70) compared to those with the G allele.
    Conclusion: The TNFα.- 308A allele has an influence on developing symptoms of COVID-19 in Cuban patients, and that it particularly increases the risk of presenting severe forms of the disease in the eastern region of the country.
    Language English
    Publishing date 2022-03-07
    Publishing country Egypt
    Document type Journal Article
    ZDB-ID 2515357-2
    ISSN 2090-2441 ; 2090-2441
    ISSN (online) 2090-2441
    ISSN 2090-2441
    DOI 10.1186/s43042-022-00274-0
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