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Article ; Online: Individuality and stability of the koala (

Eisenhofer, Raphael / Brice, Kylie L / Blyton, Michaela Dj / Bevins, Scott E / Leigh, Kellie / Singh, Brajesh K / Helgen, Kristofer M / Hough, Ian / Daniels, Christopher B / Speight, Natasha / Moore, Ben D

PeerJ

2023 Volume 11, Page(s) e14598

Abstract: Gut microbiota studies often rely on a single sample taken per individual, representing a snapshot in time. However, we know that gut microbiota composition in many animals exhibits intra-individual variation over the course of days to months. Such ... ...

Abstract	Gut microbiota studies often rely on a single sample taken per individual, representing a snapshot in time. However, we know that gut microbiota composition in many animals exhibits intra-individual variation over the course of days to months. Such temporal variations can be a confounding factor in studies seeking to compare the gut microbiota of different wild populations, or to assess the impact of medical/veterinary interventions. To date, little is known about the variability of the koala (
MeSH term(s)	Animals ; Phascolarctidae/genetics ; Individuality ; RNA, Ribosomal, 16S/genetics ; Australia ; Microbiota
Chemical Substances	RNA, Ribosomal, 16S
Language	English
Publishing date	2023-01-23
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2703241-3
ISSN	2167-8359 ; 2167-8359
ISSN (online)	2167-8359
ISSN	2167-8359
DOI	10.7717/peerj.14598
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: Individuality and stability of the koala (Phascolarctos cinereus) faecal microbiota through time

Raphael Eisenhofer / Kylie L. Brice / Michaela DJ Blyton / Scott E. Bevins / Kellie Leigh / Brajesh K. Singh / Kristofer M. Helgen / Ian Hough / Christopher B. Daniels / Natasha Speight / Ben D. Moore

PeerJ, Vol 11, p e

2023 Volume 14598

Abstract	Gut microbiota studies often rely on a single sample taken per individual, representing a snapshot in time. However, we know that gut microbiota composition in many animals exhibits intra-individual variation over the course of days to months. Such temporal variations can be a confounding factor in studies seeking to compare the gut microbiota of different wild populations, or to assess the impact of medical/veterinary interventions. To date, little is known about the variability of the koala (Phascolarctos cinereus) gut microbiota through time. Here, we characterise the gut microbiota from faecal samples collected at eight timepoints over a month for a captive population of South Australian koalas (n individuals = 7), and monthly over 7 months for a wild population of New South Wales koalas (n individuals = 5). Using 16S rRNA gene sequencing, we found that microbial diversity was stable over the course of days to months. Each koala had a distinct faecal microbiota composition which in the captive koalas was stable across days. The wild koalas showed more variation across months, although each individual still maintained a distinct microbial composition. Per koala, an average of 57 (±16) amplicon sequence variants (ASVs) were detected across all time points; these ASVs accounted for an average of 97% (±1.9%) of the faecal microbial community per koala. The koala faecal microbiota exhibits stability over the course of days to months. Such knowledge will be useful for future studies comparing koala populations and developing microbiota interventions for this regionally endangered marsupial.
Keywords	Time series ; Longitudinal ; 16S rRNA ; Marsupial ; Eucalyptus ; Core microbiota ; Medicine ; R ; Biology (General) ; QH301-705.5
Subject code	333
Language	English
Publishing date	2023-01-01T00:00:00Z
Publisher	PeerJ Inc.
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article ; Online: Sebaceous Nevus of the Scalp.

Goel, Pedram / Wolfswinkel, Erik M / Fahradyan, Artur / Tsuha, Michaela / Hough, Michelle / Magee, William / Hammoudeh, Jeffrey A / Urata, Mark M / Howell, Lori K

The Journal of craniofacial surgery

2019 Volume 31, Issue 1, Page(s) 257–260

Abstract: Excisions of scalp nevus sebaceous (NS) presents a unique challenge due to limited soft tissue laxity, hair-bearing skin, and convex surfaces which often leave the surgeon and patient underwhelmed with the reconstructive outcome. In this study, the ... ...

Abstract	Excisions of scalp nevus sebaceous (NS) presents a unique challenge due to limited soft tissue laxity, hair-bearing skin, and convex surfaces which often leave the surgeon and patient underwhelmed with the reconstructive outcome. In this study, the authors conducted an institutional review board-approved retrospective review of patients who underwent excision of pathologically proven scalp primary NS from 2003 to 2017 at our institution to better define the reconstructive outcomes and options for treatment of pediatric scalp NS. 92 patients were included in the study, 54 males (58.7%) and 38 females (41.3%). The average age at surgery was 7.24 years (0.5-16.0; SD 4.7). Local tissue undermining/galeal scoring with primary closure (LTUGS) was used for lesions with average surface area of 3.6 cm, rotational or transposition flaps (RF/TF) for lesions averaging 4.3 cm, completed serial excision for lesions averaging 13.9 cm, and tissue expansion (TE) for lesions averaging 21 cm (P <0.001). One or more poor outcomes were experienced by 35 patients (38%), with a significant difference between the surgical groups; LTUGS 37.2% (29/78), RF/TF 60% (3/5), serial excision 100% (3/3), TE 0% (0/6) (P = 0.022). Univariant binary regression analysis within the LTUGS and RF/TF groups showed that lesion size was a significant predictor of poor outcomes (P = 0.012). All specimens in this study were negative for carcinoma. Therefore, most pediatric nevus sebaceous of the scalp can be managed by a single-phase procedure though risk of poor outcomes increase with nevus size with high rates of poor outcomes even with small lesions.
MeSH term(s)	Adolescent ; Child ; Child, Preschool ; Female ; Humans ; Infant ; Male ; Nevus/surgery ; Nevus, Sebaceous of Jadassohn/surgery ; Reconstructive Surgical Procedures ; Retrospective Studies ; Scalp/surgery ; Surgical Flaps/surgery
Language	English
Publishing date	2019-11-14
Publishing country	United States
Document type	Journal Article
ZDB-ID	1159501-2
ISSN	1536-3732 ; 1049-2275
ISSN (online)	1536-3732
ISSN	1049-2275
DOI	10.1097/SCS.0000000000006007
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article: Measurement of a low-absorption sample of OH-reduced fused silica.

Hild, Stefan / Lück, Harald / Winkler, Walter / Strain, Ken / Grote, Hartmut / Smith, Joshua / Malec, Michaela / Hewitson, Martin / Willke, Benno / Hough, James / Danzmann, Karsten

Applied optics

2006 Volume 45, Issue 28, Page(s) 7269–7272

Abstract: Low-absorption optics made of OH-reduced fused silica are a key technology for future gravitational wave detectors such as the Advanced LIGO. We developed a sensitive method to measure the absorption inside the beam splitter of the GEO 600, taking ... ...

Abstract	Low-absorption optics made of OH-reduced fused silica are a key technology for future gravitational wave detectors such as the Advanced LIGO. We developed a sensitive method to measure the absorption inside the beam splitter of the GEO 600, taking advantage of the effect of thermal lensing. Using this method, we derived a bulk absorption of less than 0.25 ppm/cm for a piece of Suprasil 311 SV at a wavelength of 1064 nm. To the best of our knowledge, this is the lowest value of light absorption inside fused silica reported so far in the literature.
Language	English
Publishing date	2006-10-01
Publishing country	United States
Document type	Journal Article
ISSN	1559-128X
ISSN	1559-128X
DOI	10.1364/ao.45.007269
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: The transcription factor encyclopedia.

Yusuf, Dimas / Butland, Stefanie L / Swanson, Magdalena I / Bolotin, Eugene / Ticoll, Amy / Cheung, Warren A / Zhang, Xiao Yu Cindy / Dickman, Christopher T D / Fulton, Debra L / Lim, Jonathan S / Schnabl, Jake M / Ramos, Oscar H P / Vasseur-Cognet, Mireille / de Leeuw, Charles N / Simpson, Elizabeth M / Ryffel, Gerhart U / Lam, Eric W-F / Kist, Ralf / Wilson, Miranda S C /

Marco-Ferreres, Raquel / Brosens, Jan J / Beccari, Leonardo L / Bovolenta, Paola / Benayoun, Bérénice A / Monteiro, Lara J / Schwenen, Helma D C / Grontved, Lars / Wederell, Elizabeth / Mandrup, Susanne / Veitia, Reiner A / Chakravarthy, Harini / Hoodless, Pamela A / Mancarelli, M Michela / Torbett, Bruce E / Banham, Alison H / Reddy, Sekhar P / Cullum, Rebecca L / Liedtke, Michaela / Tschan, Mario P / Vaz, Michelle / Rizzino, Angie / Zannini, Mariastella / Frietze, Seth / Farnham, Peggy J / Eijkelenboom, Astrid / Brown, Philip J / Laperrière, David / Leprince, Dominique / de Cristofaro, Tiziana / Prince, Kelly L / Putker, Marrit / del Peso, Luis / Camenisch, Gieri / Wenger, Roland H / Mikula, Michal / Rozendaal, Marieke / Mader, Sylvie / Ostrowski, Jerzy / Rhodes, Simon J / Van Rechem, Capucine / Boulay, Gaylor / Olechnowicz, Sam W Z / Breslin, Mary B / Lan, Michael S / Nanan, Kyster K / Wegner, Michael / Hou, Juan / Mullen, Rachel D / Colvin, Stephanie C / Noy, Peter John / Webb, Carol F / Witek, Matthew E / Ferrell, Scott / Daniel, Juliet M / Park, Jason / Waldman, Scott A / Peet, Daniel J / Taggart, Michael / Jayaraman, Padma-Sheela / Karrich, Julien J / Blom, Bianca / Vesuna, Farhad / O'Geen, Henriette / Sun, Yunfu / Gronostajski, Richard M / Woodcroft, Mark W / Hough, Margaret R / Chen, Edwin / Europe-Finner, G Nicholas / Karolczak-Bayatti, Magdalena / Bailey, Jarrod / Hankinson, Oliver / Raman, Venu / LeBrun, David P / Biswal, Shyam / Harvey, Christopher J / DeBruyne, Jason P / Hogenesch, John B / Hevner, Robert F / Héligon, Christophe / Luo, Xin M / Blank, Marissa Cathleen / Millen, Kathleen Joyce / Sharlin, David S / Forrest, Douglas / Dahlman-Wright, Karin / Zhao, Chunyan / Mishima, Yuriko / Sinha, Satrajit / Chakrabarti, Rumela / Portales-Casamar, Elodie / Sladek, Frances M / Bradley, Philip H / Wasserman, Wyeth W

Genome biology

2012 Volume 13, Issue 3, Page(s) R24

Abstract: Here we present the Transcription Factor Encyclopedia (TFe), a new web-based compendium of mini review articles on transcription factors (TFs) that is founded on the principles of open access and collaboration. Our consortium of over 100 researchers has ... ...

Abstract	Here we present the Transcription Factor Encyclopedia (TFe), a new web-based compendium of mini review articles on transcription factors (TFs) that is founded on the principles of open access and collaboration. Our consortium of over 100 researchers has collectively contributed over 130 mini review articles on pertinent human, mouse and rat TFs. Notable features of the TFe website include a high-quality PDF generator and web API for programmatic data retrieval. TFe aims to rapidly educate scientists about the TFs they encounter through the delivery of succinct summaries written and vetted by experts in the field. TFe is available at http://www.cisreg.ca/tfe.
MeSH term(s)	Access to Information ; Animals ; Computational Biology ; Databases, Protein/supply & distribution ; Encyclopedias as Topic ; Humans ; Internet ; Mice ; Rats ; Transcription Factors/genetics ; Transcription, Genetic
Chemical Substances	Transcription Factors
Language	English
Publishing date	2012-03-28
Publishing country	England
Document type	Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
ZDB-ID	2040529-7
ISSN	1474-760X ; 1474-760X
ISSN (online)	1474-760X
ISSN	1474-760X
DOI	10.1186/gb-2012-13-3-r24
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article: The Transcription Factor Encyclopedia

Yusuf, Dimas / Butland, Stefanie L / Swanson, Magdalena I / Bolotin, Eugene / Ticoll, Amy / Cheung, Warren A / Cindy Zhang, Xiao Yu / Dickman, Christopher TD / Fulton, Debra L / Lim, Jonathan S / Schnabl, Jake M / Ramos, Oscar HP / Vasseur-Cognet, Mireille / de Leeuw, Charles N / Simpson, Elizabeth M / Ryffel, Gerhart U / Lam, Eric W-F / Kist, Ralf / Wilson, Miranda SC /

Marco-Ferreres, Raquel / Brosens, Jan J / Beccari, Leonardo L / Bovolenta, Paola / Benayoun, Bérénice A / Monteiro, Lara J / Schwenen, Helma DC / Grontved, Lars / Wederell, Elizabeth / Mandrup, Susanne / Veitia, Reiner A / Chakravarthy, Harini / Hoodless, Pamela A / Mancarelli, M Michela / Torbett, Bruce E / Banham, Alison H / Reddy, Sekhar P / Cullum, Rebecca L / Liedtke, Michaela / Tschan, Mario P / Vaz, Michelle / Rizzino, Angie / Zannini, Mariastella / Frietze, Seth / Farnham, Peggy J / Eijkelenboom, Astrid / Brown, Philip J / Laperrière, David / Leprince, Dominique / de Cristofaro, Tiziana / Prince, Kelly L / Putker, Marrit / del Peso, Luis / Camenisch, Gieri / Wenger, Roland H / Mikula, Michal / Rozendaal, Marieke / Mader, Sylvie / Ostrowski, Jerzy / Rhodes, Simon J / Van Rechem, Capucine / Boulay, Gaylor / Olechnowicz, Sam WZ / Breslin, Mary B / Lan, Michael S / Nanan, Kyster K / Wegner, Michael / Hou, Juan / Mullen, Rachel D / Colvin, Stephanie C / Noy, Peter John / Webb, Carol F / Witek, Matthew E / Ferrell, Scott / Daniel, Juliet M / Park, Jason / Waldman, Scott A / Peet, Daniel J / Taggart, Michael / Jayaraman, Padma-Sheela / Karrich, Julien J / Blom, Bianca / Vesuna, Farhad / O’Geen, Henriette / Sun, Yunfu / Gronostajski, Richard M / Woodcroft, Mark W / Hough, Margaret R / Chen, Edwin / Europe-Finner, G Nicholas / Karolczak-Bayatti, Magdalena / Bailey, Jarrod / Hankinson, Oliver / Raman, Venu / LeBrun, David P / Biswal, Shyam / Harvey, Christopher J / DeBruyne, Jason P / Hogenesch, John B / Hevner, Robert F / Héligon, Christophe / Luo, Xin M / Blank, Marissa Cathleen / Millen, Kathleen Joyce / Sharlin, David S / Forrest, Douglas / Dahlman-Wright, Karin / Zhao, Chunyan / Mishima, Yuriko / Sinha, Satrajit / Chakrabarti, Rumela / Portales-Casamar, Elodie / Sladek, Frances M / Bradley, Philip H / Wasserman, Wyeth W

GenomeBiology.com. 2012 Mar., v. 13, no. 3

2012

Abstract	Here we present the Transcription Factor Encyclopedia (TFe), a new web-based compendium of mini review articles on transcription factors (TFs) that is founded on the principles of open access and collaboration. Our consortium of over 100 researchers has collectively contributed over 130 mini review articles on pertinent human, mouse and rat TFs. Notable features of the TFe website include a high-quality PDF generator and web API for programmatic data retrieval. TFe aims to rapidly educate scientists about the TFs they encounter through the delivery of succinct summaries written and vetted by experts in the field. TFe is available at http://www.cisreg.ca/tfe .
Keywords	Internet ; humans ; mice ; rats ; transcription factors
Language	English
Dates of publication	2012-03
Size	p. 2882.
Publishing place	Springer-Verlag
Document type	Article
ZDB-ID	2040529-7
ISSN	1474-760X ; 1465-6914 ; 1465-6906
ISSN (online)	1474-760X ; 1465-6914
ISSN	1465-6906
DOI	10.1186/gb-2012-13-3-r24
Database	NAL-Catalogue (AGRICOLA)

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Article: Transcription Factor Encyclopedia

Marco-Ferreres, Raquel / Brosens, Jan J / Beccari, Leonardo L / Bovolenta, Paola / Benayoun, Bérénice A / Monteiro, Lara J / Schwenen, Helma DC / Grontved, Lars / Wederell, Elizabeth / Mandrup, Susanne / Veitia, Reiner A / Chakravarthy, Harini / Hoodless, Pamela A / Mancarelli, M Michela / Torbett, Bruce E / Banham, Alison H / Reddy, Sekhar P / Cullum, Rebecca L / Liedtke, Michaela / Tschan, Mario P / Vaz, Michelle / Rizzino, Angie / Zannini, Mariastella / Frietze, Seth / Farnham, Peggy J / Eijkelenboom, Astrid / Brown, Philip J / Laperrière, David / Leprince, Dominique / de Cristofaro, Tiziana / Prince, Kelly L / Putker, Marrit / del Peso, Luis / Camenisch, Gieri / Wenger, Roland H / Mikula, Michal / Rozendaal, Marieke / Mader, Sylvie / Ostrowski, Jerzy / Rhodes, Simon J / Van Rechem, Capucine / Boulay, Gaylor / Olechnowicz, Sam WZ / Breslin, Mary B / Lan, Michael S / Nanan, Kyster K / Wegner, Michael / Hou, Juan / Mullen, Rachel D / Colvin, Stephanie C / Noy, Peter John / Webb, Carol F / Witek, Matthew E / Ferrell, Scott / Daniel, Juliet M / Park, Jason / Waldman, Scott A / Peet, Daniel J / Taggart, Michael / Jayaraman, Padma-Sheela / Karrich, Julien J / Blom, Bianca / Vesuna, Farhad / O’Geen, Henriette / Sun, Yunfu / Gronostajski, Richard M / Woodcroft, Mark W / Hough, Margaret R / Chen, Edwin / Europe-Finner, G Nicholas / Karolczak-Bayatti, Magdalena / Bailey, Jarrod / Hankinson, Oliver / Raman, Venu / LeBrun, David P / Biswal, Shyam / Harvey, Christopher J / DeBruyne, Jason P / Hogenesch, John B / Hevner, Robert F / Héligon, Christophe / Luo, Xin M / Blank, Marissa Cathleen / Millen, Kathleen Joyce / Sharlin, David S / Forrest, Douglas / Dahlman-Wright, Karin / Zhao, Chunyan / Mishima, Yuriko / Sinha, Satrajit / Chakrabarti, Rumela / Portales-Casamar, Elodie / Sladek, Frances M / Bradley, Philip H / Wasserman, Wyeth W

GenomeBiology.com

Volume v. 13,, Issue no. 3

Abstract	Here we present the Transcription Factor Encyclopedia (TFe), a new web-based compendium of mini review articles on transcription factors (TFs) that is founded on the principles of open access and collaboration. Our consortium of over 100 researchers has collectively contributed over 130 mini review articles on pertinent human, mouse and rat TFs. Notable features of the TFe website include a high-quality PDF generator and web API for programmatic data retrieval. TFe aims to rapidly educate scientists about the TFs they encounter through the delivery of succinct summaries written and vetted by experts in the field. TFe is available at http://www.cisreg.ca/tfe .
Keywords	mice ; transcription factors ; humans ; rats ; Internet
Language	English
Document type	Article
ISSN	1465-6906
Database	AGRIS - International Information System for the Agricultural Sciences and Technology

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Article ; Online: Individuality and stability of the koala (

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Article ; Online: Individuality and stability of the koala (Phascolarctos cinereus) faecal microbiota through time

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Article ; Online: Sebaceous Nevus of the Scalp.

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Article: Measurement of a low-absorption sample of OH-reduced fused silica.

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Article ; Online: The transcription factor encyclopedia.

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Article: The Transcription Factor Encyclopedia

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Article: Transcription Factor Encyclopedia

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