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  1. Article ; Online: Sexual dimorphism in the Chinese endemic species Pachyhynobius shangchengensis Fei, Qu and Wu, 1983 (Urodela

    Jianli Xiong / Baowei Zhang / Qiangqiang Liu / Tao Pan / Jianping Gou

    PeerJ, Vol 7, p e

    Hynobiidae)

    2019  Volume 6408

    Abstract: Sexual dimorphism (SD) is a widespread phenomenon in most vertebrate species and is exhibited in a myriad of ways. In amphibians, sexual size dimorphism, in which females are larger than males, is the most common type, and sexual shape dimorphism varies ... ...

    Abstract Sexual dimorphism (SD) is a widespread phenomenon in most vertebrate species and is exhibited in a myriad of ways. In amphibians, sexual size dimorphism, in which females are larger than males, is the most common type, and sexual shape dimorphism varies among species. Different selection forces (sexual selection, fecundity selection, and ecological selection) that act differently upon the sexes form the consequence of SD. Thus, studies of SD provide information about the general intersexual divergence of the same species and allow insights into the impact of selective forces on the sexes. In this study, we analyzed morphometric data of the Shangcheng stout salamander, Pachyhynobius shangchengensis, an endemic and poorly known Chinese salamander, to examine sexual dimorphism in size and shape. The morphometric data included 15 characteristics of 68 females and 55 males which were analyzed using univariate and multivariate methods. A significant difference was found between the sexes in terms of both body size (snout-vent length) and some body shapes (e.g., head length and width, tail length and width, distance between limbs, and limb length and width) in this salamander. The longer snout-vent length in males may be attributed to sexual selection, longer and wider head in males may contribute to male-male competition, longer and wider tail in males may be attributed to energy storage and reproductive success, the larger distance between limbs in females is likely due to a fecundity advantage, and longer and more robust limbs in males may be related to reproductive or competitive behaviors. These results demonstrated that sexual dimorphism of different morphological traits is the consequence of different selection forces that act differently upon the sexes.
    Keywords Sexual shape dimorphism ; Sexual selection ; Morphometrics ; Shangcheng stout salamander ; Sexual size dimorphism ; Medicine ; R ; Biology (General) ; QH301-705.5
    Subject code 590
    Language English
    Publishing date 2019-02-01T00:00:00Z
    Publisher PeerJ Inc.
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  2. Article: Volatile component quantification in combination with putative gene expression analysis reveal key players in aroma formation during fruit ripening in Carica papaya cv 'Hong fei'

    Liu, R. / Du, Z. / Zhang, Y. / Shi, Y. / Chen, X. / Lin, L. / Xiong, Y. / Chen, M.

    Postharvest biology and technology

    2019  Volume 158, Issue -, Page(s) 110987

    Document type Article
    ZDB-ID 1082798-5
    ISSN 0925-5214
    Database Current Contents Nutrition, Environment, Agriculture

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  3. Article: Volatile component quantification in combination with putative gene expression analysis reveal key players in aroma formation during fruit ripening in Carica papaya cv ‘Hong fei

    Ruiming, Liu / Zhenghua, Du / Yi, Zhang / Yingying, Shi / Xiaobing, Chen / Lin, Lin / Yueming, Xiong / Mingjie, Chen

    Postharvest biology and technology. 2019 Aug. 17,

    2019  

    Abstract: ... different stages of fruit ripening were isolated from ‘Hong fei’ variety by solvent assisted flavor ... synthesis in ‘Hong fei’ during fruit ripening. ...

    Abstract The purpose of this research was to quantify volatile compound changes during papaya fruit ripening and to identify putative genes that are responsible for aroma synthesis. Volatile compounds at four different stages of fruit ripening were isolated from ‘Hong fei’ variety by solvent assisted flavor evaporation, then analyzed by gas chromatography-mass spectrometry. In total, 38 different volatile compounds were identified, including terpenes, esters, lactones, ketones, alcohols, aldehydes, volatile acids, S- and N- containing compounds, and volatile phenols. The contents of terpenes, esters, lactones, ketones, volatile acids, and volatile phenols showed general upward trends and reached amximum at half yellow or full ripe stages, meanwhile most alcohols, aldehydes, S- and N-containing compounds showed downward trends with fruit ripening. The putative aroma biosynthesis genes were quantified by RT- qPCR, and the correlation analysis suggested that CpLIS1 and CpP450-2 could be responsible for linalool and linalool oxide biosynthesis, respectively; BITC biosynthesis could be regulated at post-transcriptional, post-translational or enzymatic levels, CpAAT1 and CpACX1 could catalyze the formation of some specific esters or lactones. This study offered important clues for further dissection of the molecular mechanisms underlining aroma synthesis in ‘Hong fei’ during fruit ripening.
    Keywords Carica papaya ; biosynthesis ; dissection ; evaporation ; flavor ; fruits ; gas chromatography-mass spectrometry ; gene expression ; lactones ; linalool ; odors ; papayas ; solvents ; volatile compounds
    Language English
    Dates of publication 2019-0817
    Publishing place Elsevier B.V.
    Document type Article
    Note NAL-AP-2-clean ; Pre-press version
    ZDB-ID 1082798-5
    ISSN 1873-2356 ; 0925-5214
    ISSN (online) 1873-2356
    ISSN 0925-5214
    DOI 10.1016/j.postharvbio.2019.110987
    Database NAL-Catalogue (AGRICOLA)

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  4. Article ; Online: scDOT: enhancing single-cell RNA-Seq data annotation and uncovering novel cell types through multi-reference integration.

    Xiong, Yi-Xuan / Zhang, Xiao-Fei

    Briefings in bioinformatics

    2024  Volume 25, Issue 2

    Abstract: The proliferation of single-cell RNA-seq data has greatly enhanced our ability to comprehend the intricate nature of diverse tissues. However, accurately annotating cell types in such data, especially when handling multiple reference datasets and ... ...

    Abstract The proliferation of single-cell RNA-seq data has greatly enhanced our ability to comprehend the intricate nature of diverse tissues. However, accurately annotating cell types in such data, especially when handling multiple reference datasets and identifying novel cell types, remains a significant challenge. To address these issues, we introduce Single Cell annotation based on Distance metric learning and Optimal Transport (scDOT), an innovative cell-type annotation method adept at integrating multiple reference datasets and uncovering previously unseen cell types. scDOT introduces two key innovations. First, by incorporating distance metric learning and optimal transport, it presents a novel optimization framework. This framework effectively learns the predictive power of each reference dataset for new query data and simultaneously establishes a probabilistic mapping between cells in the query data and reference-defined cell types. Secondly, scDOT develops an interpretable scoring system based on the acquired probabilistic mapping, enabling the precise identification of previously unseen cell types within the data. To rigorously assess scDOT's capabilities, we systematically evaluate its performance using two diverse collections of benchmark datasets encompassing various tissues, sequencing technologies and diverse cell types. Our experimental results consistently affirm the superior performance of scDOT in cell-type annotation and the identification of previously unseen cell types. These advancements provide researchers with a potent tool for precise cell-type annotation, ultimately enriching our understanding of complex biological tissues.
    MeSH term(s) Humans ; Data Curation ; Single-Cell Gene Expression Analysis ; Benchmarking ; Learning ; Research Personnel
    Language English
    Publishing date 2024-03-03
    Publishing country England
    Document type Journal Article
    ZDB-ID 2068142-2
    ISSN 1477-4054 ; 1467-5463
    ISSN (online) 1477-4054
    ISSN 1467-5463
    DOI 10.1093/bib/bbae072
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Gouty tophus in the airway: A case report.

    Xiong, Chenyili / Chen, Fei

    Asian journal of surgery

    2023  Volume 46, Issue 7, Page(s) 2892–2893

    Language English
    Publishing date 2023-02-14
    Publishing country Netherlands
    Document type Letter
    ZDB-ID 1068461-x
    ISSN 0219-3108 ; 1015-9584
    ISSN (online) 0219-3108
    ISSN 1015-9584
    DOI 10.1016/j.asjsur.2023.01.100
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Ski ameliorates synovial cell inflammation in monosodium iodoacetate-induced knee osteoarthritis.

    Xiong, Ao / Xiong, Renping / Luo, Fei

    Heliyon

    2024  Volume 10, Issue 2, Page(s) e24471

    Abstract: Knee osteoarthritis (KOA) is one of the most common degenerative diseases and is characterized by cartilage degeneration, synovial inflammation, joint stiffness and even loss of motor function. In the clinical treatment of arthritis, conventional ... ...

    Abstract Knee osteoarthritis (KOA) is one of the most common degenerative diseases and is characterized by cartilage degeneration, synovial inflammation, joint stiffness and even loss of motor function. In the clinical treatment of arthritis, conventional analgesic and anti-inflammatory drugs have great side effects. We have evaluated the possibility of the endogenous transcription regulator Ski as an anti-inflammatory alternative in OA through experimental studies in animal models and in vivo and in vitro. Male Sprague‒Dawley rats were injected with monosodium iodoacetate (MIA) into the knee joints to induce symptoms identical to those of human OA. We isolated knee synovial tissue under sterile conditions and cultured primary synovial cells. In vitro, Ski inhibits the proinflammatory factors IL-1β, IL-6 and TNF-α mRNA and protein expression in lipopolysaccharide (LPS)-stimulated fibroblast-like synoviocytes (FLSs) and U-937 cells. In addition, Ski attenuates or inhibits OA-induced synovial inflammation by upregulating the protein expression of the anti-inflammatory factor IL-4 and downregulating the protein expression of downstream molecules related to the NF-κB inflammatory signaling pathway. In vivo, Ski downregulated proinflammatory factors and p-NF-κB p65 in KOA synovial tissue and alleviated pain-related behaviors in KOA rats. These experimental data show that Ski has strong anti-inflammatory activity. Ski is an endogenous factor, and if used in the clinical treatment of OA, the side effects are small. However, the anti-inflammatory mechanism of Ski must be further studied.
    Language English
    Publishing date 2024-01-14
    Publishing country England
    Document type Journal Article
    ZDB-ID 2835763-2
    ISSN 2405-8440
    ISSN 2405-8440
    DOI 10.1016/j.heliyon.2024.e24471
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: A commentary on "Distribution of coronal plane alignment of the knee classification in Chinese osteoarthritic and healthy population: A retrospective cross-sectional observational study".

    Xiong, Ao / Luo, Fei / Lu, Hong

    International journal of surgery (London, England)

    2024  

    Language English
    Publishing date 2024-04-09
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2212038-5
    ISSN 1743-9159 ; 1743-9191
    ISSN (online) 1743-9159
    ISSN 1743-9191
    DOI 10.1097/JS9.0000000000001433
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Fish species mislabelling in China: evidence from a survey of frozen, dried, and surimi-based fish products marketed as cod-related species.

    Yao, Lili / Wang, Shihui / Xue, Hanyue / Fei, Yanjin / Xiong, Xiaohui / Xiong, Xiong

    Food additives & contaminants. Part A, Chemistry, analysis, control, exposure & risk assessment

    2024  Volume 41, Issue 2, Page(s) 134–142

    Abstract: Cod'-related species are among the most appreciated marine fish resources around the world, but are also prone to species mislabelling. In the present study, a total of 76 frozen, dried, and surimi-based fish products, sold as 'Cod' (59 products), ' ... ...

    Abstract 'Cod'-related species are among the most appreciated marine fish resources around the world, but are also prone to species mislabelling. In the present study, a total of 76 frozen, dried, and surimi-based fish products, sold as 'Cod' (59 products), 'Atlantic authentic Cod' (11 products), and 'Authentic Cod' (6 products), were collected in China. A species-specific LAMP (loop-mediated isothermal amplification) method was used to screen for the presence of Atlantic cod (
    MeSH term(s) Humans ; Animals ; Gadiformes/genetics ; Gadus morhua/genetics ; Real-Time Polymerase Chain Reaction ; Sequence Analysis, DNA ; Fish Products
    Language English
    Publishing date 2024-02-01
    Publishing country England
    Document type Journal Article
    ZDB-ID 2462951-0
    ISSN 1944-0057 ; 1944-0049
    ISSN (online) 1944-0057
    ISSN 1944-0049
    DOI 10.1080/19440049.2024.2302962
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Transcriptomic datasets of Verticillium wilt resistant and non-resistant Gossypium barbadense varieties during pathogen inoculation.

    Xiong, Xianpeng / Sun, Cong / Chen, Bin / Sun, Jie / Fei, Cong / Xue, Fei

    Scientific data

    2024  Volume 11, Issue 1, Page(s) 11

    Abstract: Cotton is a significant cash crop and the primary source of natural fiber globally. Among the numerous diseases encountered in cotton production, Verticillium wilt is one of the most serious, caused by the pathogen Verticillium dahliae (V. dahliae). ... ...

    Abstract Cotton is a significant cash crop and the primary source of natural fiber globally. Among the numerous diseases encountered in cotton production, Verticillium wilt is one of the most serious, caused by the pathogen Verticillium dahliae (V. dahliae). Unfortunately, there are no effective targeted methods to combat this disease. Genomic resources for Verticillium wilt resistance primarily exist in Gossypium barbadense (G. barbadense). Regrettably, there have been limited transcriptomic comparisons between V. dahliae-resistant and -susceptible varieties of G. barbadense due to the scarcity of susceptible resources. In this study, we conducted a transcriptome analysis on both V. dahliae-resistant and -susceptible varieties of G. barbadense at the 0, 12, 24 and 48 hours after V. dahliae inoculation. This comparative transcriptome analysis yielded high-quality data and offered new insights into the molecular mechanisms underlying cotton's resistance against this destructive pathogen.
    MeSH term(s) Disease Resistance/genetics ; Gene Expression Profiling ; Gene Expression Regulation, Plant ; Gossypium/genetics ; Plant Diseases/genetics ; Verticillium/genetics
    Language English
    Publishing date 2024-01-02
    Publishing country England
    Document type Dataset ; Journal Article
    ZDB-ID 2775191-0
    ISSN 2052-4463 ; 2052-4463
    ISSN (online) 2052-4463
    ISSN 2052-4463
    DOI 10.1038/s41597-023-02852-2
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Ski ameliorates synovial cell inflammation in monosodium iodoacetate-induced knee osteoarthritis

    Ao Xiong / Renping Xiong / Fei Luo

    Heliyon, Vol 10, Iss 2, Pp e24471- (2024)

    2024  

    Abstract: Knee osteoarthritis (KOA) is one of the most common degenerative diseases and is characterized by cartilage degeneration, synovial inflammation, joint stiffness and even loss of motor function. In the clinical treatment of arthritis, conventional ... ...

    Abstract Knee osteoarthritis (KOA) is one of the most common degenerative diseases and is characterized by cartilage degeneration, synovial inflammation, joint stiffness and even loss of motor function. In the clinical treatment of arthritis, conventional analgesic and anti-inflammatory drugs have great side effects. We have evaluated the possibility of the endogenous transcription regulator Ski as an anti-inflammatory alternative in OA through experimental studies in animal models and in vivo and in vitro. Male Sprague‒Dawley rats were injected with monosodium iodoacetate (MIA) into the knee joints to induce symptoms identical to those of human OA. We isolated knee synovial tissue under sterile conditions and cultured primary synovial cells. In vitro, Ski inhibits the proinflammatory factors IL-1β, IL-6 and TNF-α mRNA and protein expression in lipopolysaccharide (LPS)-stimulated fibroblast-like synoviocytes (FLSs) and U-937 cells. In addition, Ski attenuates or inhibits OA-induced synovial inflammation by upregulating the protein expression of the anti-inflammatory factor IL-4 and downregulating the protein expression of downstream molecules related to the NF-κB inflammatory signaling pathway. In vivo, Ski downregulated proinflammatory factors and p–NF–κB p65 in KOA synovial tissue and alleviated pain-related behaviors in KOA rats. These experimental data show that Ski has strong anti-inflammatory activity. Ski is an endogenous factor, and if used in the clinical treatment of OA, the side effects are small. However, the anti-inflammatory mechanism of Ski must be further studied.
    Keywords Osteoarthritis ; Ski ; Fibroblast-like synoviocytes ; U-937 cell ; Proinflammatory factors ; Anti-inflammatory factor ; Science (General) ; Q1-390 ; Social sciences (General) ; H1-99
    Subject code 616
    Language English
    Publishing date 2024-01-01T00:00:00Z
    Publisher Elsevier
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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