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  1. Article ; Online: Dialogue between E. coli free radical pathways and the mitochondria of C. elegans.

    Govindan, J Amaranath / Jayamani, Elamparithi / Zhang, Xinrui / Mylonakis, Eleftherios / Ruvkun, Gary

    Proceedings of the National Academy of Sciences of the United States of America

    2015  Volume 112, Issue 40, Page(s) 12456–12461

    Abstract: ... responses could be suppressed by additional mutations in E. coli, suggesting that C. elegans responds ... to products of E. coli to anticipate challenges to its mitochondrion. Out of 50 C. elegans gene inactivations ... to a free radical producing E. coli mutant, including the bZip transcription factor atfs-1 ...

    Abstract The microbial world presents a complex palette of opportunities and dangers to animals, which have developed surveillance and response strategies to hints of microbial intent. We show here that the mitochondrial homeostatic response pathway of the nematode Caenorhabditis elegans responds to Escherichia coli mutations that activate free radical detoxification pathways. Activation of C. elegans mitochondrial responses could be suppressed by additional mutations in E. coli, suggesting that C. elegans responds to products of E. coli to anticipate challenges to its mitochondrion. Out of 50 C. elegans gene inactivations known to mediate mitochondrial defense, we found that 7 genes were required for C. elegans response to a free radical producing E. coli mutant, including the bZip transcription factor atfs-1 (activating transcription factor associated with stress). An atfs-1 loss-of-function mutant was partially resistant to the effects of free radical-producing E. coli mutant, but a constitutively active atfs-1 mutant growing on wild-type E. coli inappropriately activated the pattern of mitochondrial responses normally induced by an E. coli free radical pathway mutant. Carbonylated proteins from free radical-producing E. coli mutant may directly activate the ATFS-1/bZIP transcription factor to induce mitochondrial stress response: feeding C. elegans with H2O2-treated E. coli induces the mitochondrial unfolded protein response, and inhibition of a gut peptide transporter partially suppressed C. elegans response to free radical damaged E. coli.
    MeSH term(s) Animals ; Animals, Genetically Modified ; Biosynthetic Pathways/genetics ; Caenorhabditis elegans/genetics ; Caenorhabditis elegans/metabolism ; Caenorhabditis elegans/microbiology ; Caenorhabditis elegans Proteins/genetics ; Caenorhabditis elegans Proteins/metabolism ; Escherichia coli/genetics ; Escherichia coli/metabolism ; Escherichia coli/physiology ; Free Radicals/metabolism ; Gene Expression ; Host-Pathogen Interactions/genetics ; Microscopy, Fluorescence ; Mitochondria/metabolism ; Mutation ; Reverse Transcriptase Polymerase Chain Reaction ; Transcription Factors/genetics ; Transcription Factors/metabolism
    Chemical Substances ATFS-1 protein, C elegans ; Caenorhabditis elegans Proteins ; Free Radicals ; Transcription Factors
    Language English
    Publishing date 2015-09-21
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 209104-5
    ISSN 1091-6490 ; 0027-8424
    ISSN (online) 1091-6490
    ISSN 0027-8424
    DOI 10.1073/pnas.1517448112
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: SARS-CoV-2 Variants and Their Clinical Significance: An Update as of May 2022.

    Mylonakis, Eleftherios

    Rhode Island medical journal (2013)

    2022  Volume 105, Issue 6, Page(s) 12–14

    MeSH term(s) COVID-19 ; Humans ; SARS-CoV-2
    Language English
    Publishing date 2022-08-01
    Publishing country United States
    Document type Journal Article
    ZDB-ID 419430-5
    ISSN 2327-2228 ; 0363-7913
    ISSN (online) 2327-2228
    ISSN 0363-7913
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: SARS-CoV-2 Variants and their Clinical Implications.

    Mylonakis, Eleftherios

    Rhode Island medical journal (2013)

    2021  Volume 104, Issue 7, Page(s) 59–60

    MeSH term(s) COVID-19 ; Humans ; SARS-CoV-2
    Language English
    Publishing date 2021-09-01
    Publishing country United States
    Document type Journal Article ; Comment
    ZDB-ID 419430-5
    ISSN 2327-2228 ; 0363-7913
    ISSN (online) 2327-2228
    ISSN 0363-7913
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Public interest trends for COVID-19 and pandemic trajectory: A time-series analysis of US state-level data.

    Ziakas, Panayiotis D / Mylonakis, Eleftherios

    PLOS digital health

    2024  Volume 3, Issue 3, Page(s) e0000462

    Abstract: Google Trends provides spatiotemporal data for user-specific terms scaled from less than 1 (lowest relative popularity) to 100 (highest relative popularity) as a proxy for the public interest. Here we use US state-level data for COVID-19 to examine ... ...

    Abstract Google Trends provides spatiotemporal data for user-specific terms scaled from less than 1 (lowest relative popularity) to 100 (highest relative popularity) as a proxy for the public interest. Here we use US state-level data for COVID-19 to examine popularity trends during the pandemic evolution. We used "coronavirus" and "covid" search terms and set the period up from January 1st, 2020, to November 12, 2022. We measured the agreement on web rankings between states using the nonparametric Kendall's W (0 for no concordance to 1 for perfect agreement). We compiled state-level weekly data on COVID-19 incidence and mortality and scaled state curves from 0 to 100 through a min-max normalization process. We used a dynamic time-warping algorithm to calculate similarities between the popularity, mortality, and incidence of COVID-19. The methodology is a pattern recognition process between time series by distance optimization. The similarity was mapped from 0 to 1, with 1 indicating perfect similarity and 0 indicating no similarity. The peak in popularity was in March 2020, succeeded by a decline and a prolonged period of fluctuation around 20%. Public interest rose briefly at the end of 2021, to fall to a low activity of around 10%. This pattern was remarkably consistent across states (Kendal's W 0.94, p < 0.001). Web search trends were an impression of contagion growth: Overall, popularity-mortality trajectories yielded higher similarity indices (median 0.78; interquartile range 0.75-0.82) compared to popularity-incidence trajectories (median 0.74; interquartile range 0.72-0.76, Wilcoxon's exact p<0.001). The popularity-mortality trajectories had a very strong similarity (>0.80) in 19/51 (37%) regions, as opposed to only 4/51 (8%) for popularity-incidence trajectories. State-level data show a fading public concern about COVID-19, and web-search popularity patterns may reflect the COVID-19 trajectory in terms of cases and mortality.
    Language English
    Publishing date 2024-03-12
    Publishing country United States
    Document type Journal Article
    ISSN 2767-3170
    ISSN (online) 2767-3170
    DOI 10.1371/journal.pdig.0000462
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: In adults with post-COVID-19 conditions, a synbiotic preparation, SIM01, alleviated some symptoms at 6 mo.

    Gotur, Deepa / Mylonakis, Eleftherios

    Annals of internal medicine

    2024  Volume 177, Issue 4, Page(s) JC45

    Abstract: Source citation: Lau RI, Su Q, Lau IS, et al. ...

    Abstract Source citation: Lau RI, Su Q, Lau IS, et al.
    MeSH term(s) Adult ; Humans ; Synbiotics ; Post-Acute COVID-19 Syndrome ; COVID-19 ; Hong Kong ; Double-Blind Method
    Language English
    Publishing date 2024-04-02
    Publishing country United States
    Document type Randomized Controlled Trial ; Journal Article
    ZDB-ID 336-0
    ISSN 1539-3704 ; 0003-4819
    ISSN (online) 1539-3704
    ISSN 0003-4819
    DOI 10.7326/J24-0018
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: In older adults, an Ad26.RSV.preF-RSV preF protein vaccine reduced RSV-related lower respiratory tract disease.

    Awar, Melina / Mylonakis, Eleftherios

    Annals of internal medicine

    2023  Volume 176, Issue 6, Page(s) JC63

    Abstract: Source citation: Falsey AR, Williams K, Gymnopoulou E, et al; CYPRESS Investigators. ...

    Abstract Source citation: Falsey AR, Williams K, Gymnopoulou E, et al; CYPRESS Investigators.
    MeSH term(s) Humans ; Aged ; Respiratory Syncytial Virus Infections/prevention & control ; Antibodies, Viral ; Respiratory Syncytial Virus Vaccines ; Respiratory Tract Diseases
    Chemical Substances Antibodies, Viral ; Respiratory Syncytial Virus Vaccines
    Language English
    Publishing date 2023-06-06
    Publishing country United States
    Document type Journal Article ; Comment
    ZDB-ID 336-0
    ISSN 1539-3704 ; 0003-4819
    ISSN (online) 1539-3704
    ISSN 0003-4819
    DOI 10.7326/J23-0039
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: Editorial:

    Junqueira, Juliana Campos / Mylonakis, Eleftherios

    Frontiers in microbiology

    2023  Volume 13, Page(s) 1128600

    Language English
    Publishing date 2023-01-04
    Publishing country Switzerland
    Document type Editorial
    ZDB-ID 2587354-4
    ISSN 1664-302X
    ISSN 1664-302X
    DOI 10.3389/fmicb.2022.1128600
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: In older adults, an AS01

    Awar, Melina / Mylonakis, Eleftherios

    Annals of internal medicine

    2023  Volume 176, Issue 6, Page(s) JC62

    Abstract: Source citation: Papi A, Ison MG, Langley JM, et al; AReSVi-006 Study Group. ...

    Abstract Source citation: Papi A, Ison MG, Langley JM, et al; AReSVi-006 Study Group.
    MeSH term(s) Humans ; Aged ; Respiratory Syncytial Virus Infections/prevention & control ; Antibodies, Neutralizing ; Antibodies, Viral ; Respiratory Syncytial Virus Vaccines/therapeutic use ; Respiratory Tract Diseases
    Chemical Substances Antibodies, Neutralizing ; Antibodies, Viral ; Respiratory Syncytial Virus Vaccines
    Language English
    Publishing date 2023-06-06
    Publishing country United States
    Document type Journal Article ; Comment
    ZDB-ID 336-0
    ISSN 1539-3704 ; 0003-4819
    ISSN (online) 1539-3704
    ISSN 0003-4819
    DOI 10.7326/J23-0038
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Public interest trends for Covid-19 and alignment with the disease trajectory: A time-series analysis of national-level data.

    Ziakas, Panayiotis D / Mylonakis, Eleftherios

    PLOS digital health

    2023  Volume 2, Issue 6, Page(s) e0000271

    Abstract: Data from web search engines have become a valuable adjunct in epidemiology and public health, specifically during epidemics. We aimed to explore the concordance of web search popularity for Covid-19 across 6 Western nations (United Kingdom, United ... ...

    Abstract Data from web search engines have become a valuable adjunct in epidemiology and public health, specifically during epidemics. We aimed to explore the concordance of web search popularity for Covid-19 across 6 Western nations (United Kingdom, United States, France, Italy, Spain and Germany) and how timeline changes align with the pandemic waves, Covid-19 mortality, and incident case trajectories. We used the Google Trends tool for web-search popularity, and "Our World in Data" on Covid-19 reported cases, deaths, and administrative responses (measured by stringency index) to analyze country-level data. The Google Trends tool provides spatiotemporal data, scaled to a range of <1 (lowest relative popularity) to 100 (highest relative popularity), for the selected search terms, timeframe, and region. We used "coronavirus" and "covid" as search terms and set the timeframe up to November 12, 2022. We obtained multiple consecutive samples using the same terms to validate against sampling bias. We consolidated national-level incident cases and deaths weekly and transformed them to a range between 0 to 100 through the min-max normalization algorithm. We calculated the concordance of relative popularity rankings between regions, using the non-parametric Kendall's W, which maps concordance between 0 (lack of agreement) to 1 (perfect match). We used a dynamic time-warping algorithm to explore the similarity between Covid-19 relative popularity, mortality, and incident case trajectories. This methodology can recognize the similarity of shapes between time-series through a distance optimization process. The peak popularity was recorded on March 2020, to be followed by a decline below 20% in the subsequent three months and a long-standing period of variation around that level. At the end of 2021, public interest spiked shortly to fade away to a low level of around 10%. This pattern was highly concordant across the six regions (Kendal's W 0.88, p< .001). In dynamic time warping analysis, national-level public interest yielded a high similarity with the Covid-19 mortality trajectory (Similarity indices range 0.60-0.79). Instead, public interest was less similar with incident cases (0.50-0.76) and stringency index trajectories (0.33-0.64). We demonstrated that public interest is better intertwined with population mortality, rather than incident case trajectory and administrative responses. As the public interest in Covid-19 gradually subsides, these observations could help predict future public interest in pandemic events.
    Language English
    Publishing date 2023-06-09
    Publishing country United States
    Document type Journal Article
    ISSN 2767-3170
    ISSN (online) 2767-3170
    DOI 10.1371/journal.pdig.0000271
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Activity of daptomycin or linezolid in combination with rifampin or gentamicin against biofilm-forming Enterococcus faecalis or E. faecium in an in vitro pharmacodynamic model using simulated endocardial vegetations and an in vivo survival assay using Galleria mellonella larvae.

    Luther, Megan K / Arvanitis, Marios / Mylonakis, Eleftherios / LaPlante, Kerry L

    Antimicrobial agents and chemotherapy

    2014  Volume 58, Issue 8, Page(s) 4612–4620

    Abstract: ... regimen against biofilm-forming E. faecalis. The addition of gentamicin to daptomycin (at 6 or 10 mg/kg ... the bactericidal activity of daptomycin against E. faecalis, and the addition of rifampin antagonized ... E. faecalis. The addition of gentamicin improved the efficacy of daptomycin against E. faecalis and ...

    Abstract Enterococci are the third most frequent cause of infective endocarditis. A high-inoculum stationary-phase in vitro pharmacodynamic model with simulated endocardial vegetations was used to simulate the human pharmacokinetics of daptomycin at 6 or 10 mg/kg of body weight/day or linezolid at 600 mg every 12 h (q12h), alone or in combination with gentamicin at 1.3 mg/kg q12h or rifampin at 300 mg q8h or 900 mg q24h. Biofilm-forming, vancomycin-susceptible Enterococcus faecalis and vancomycin-resistant Enterococcus faecium (vancomycin-resistant enterococcus [VRE]) strains were tested. At 24, 48, and 72 h, all daptomycin-containing regimens demonstrated significantly more activity (decline in CFU/g) than any linezolid-containing regimen against biofilm-forming E. faecalis. The addition of gentamicin to daptomycin (at 6 or 10 mg/kg) in the first 24 h significantly improved bactericidal activity. In contrast, the addition of rifampin delayed the bactericidal activity of daptomycin against E. faecalis, and the addition of rifampin antagonized the activities of all regimens against VRE at 24 h. Also, against VRE, the addition of gentamicin to linezolid at 72 h improved activity and was bactericidal. Rifampin significantly antagonized the activity of linezolid against VRE at 72 h. In in vivo Galleria mellonella survival assays, linezolid and daptomycin improved survival. Daptomycin at 10 mg/kg improved survival significantly over that with linezolid against E. faecalis. The addition of gentamicin improved the efficacy of daptomycin against E. faecalis and those of linezolid and daptomycin against VRE. We conclude that in enterococcal infection models, daptomycin has more activity than linezolid alone. Against biofilm-forming E. faecalis, the addition of gentamicin in the first 24 h causes the most rapid decline in CFU/g. Of interest, the addition of rifampin decreased the activity of daptomycin against both E. faecalis and VRE.
    MeSH term(s) Acetamides/pharmacokinetics ; Acetamides/pharmacology ; Animals ; Anti-Bacterial Agents/pharmacokinetics ; Anti-Bacterial Agents/pharmacology ; Biofilms/drug effects ; Biofilms/growth & development ; Colony Count, Microbial ; Daptomycin/pharmacokinetics ; Daptomycin/pharmacology ; Drug Interactions ; Drug Therapy, Combination ; Enterococcus faecalis/drug effects ; Enterococcus faecalis/physiology ; Enterococcus faecium/drug effects ; Enterococcus faecium/physiology ; Gentamicins/pharmacokinetics ; Gentamicins/pharmacology ; Humans ; Larva/drug effects ; Larva/microbiology ; Linezolid ; Microbial Sensitivity Tests ; Models, Biological ; Models, Statistical ; Moths/drug effects ; Moths/microbiology ; Oxazolidinones/pharmacokinetics ; Oxazolidinones/pharmacology ; Rifampin/pharmacokinetics ; Rifampin/pharmacology
    Chemical Substances Acetamides ; Anti-Bacterial Agents ; Gentamicins ; Oxazolidinones ; Linezolid (ISQ9I6J12J) ; Daptomycin (NWQ5N31VKK) ; Rifampin (VJT6J7R4TR)
    Language English
    Publishing date 2014-05-27
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 217602-6
    ISSN 1098-6596 ; 0066-4804
    ISSN (online) 1098-6596
    ISSN 0066-4804
    DOI 10.1128/AAC.02790-13
    Database MEDical Literature Analysis and Retrieval System OnLINE

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