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  1. Article ; Online: Reply. Beyond the plate: exploring the complexities of using dietary approaches to manage endometriosis.

    van Haaps, A P / Wijbers, J V / Schreurs, A M F / Vlek, S / Tuynman, J / De Bie, B / de Vogel, A L / van Wely, M / Mijatovic, V

    Human reproduction (Oxford, England)

    2024  Volume 39, Issue 4, Page(s) 865–866

    MeSH term(s) Female ; Humans ; Endometriosis/surgery ; Diet
    Language English
    Publishing date 2024-02-17
    Publishing country England
    Document type Journal Article
    ZDB-ID 632776-x
    ISSN 1460-2350 ; 0268-1161 ; 1477-741X
    ISSN (online) 1460-2350
    ISSN 0268-1161 ; 1477-741X
    DOI 10.1093/humrep/deae021
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: The effect of dietary interventions on pain and quality of life in women diagnosed with endometriosis: a prospective study with control group.

    van Haaps, A P / Wijbers, J V / Schreurs, A M F / Vlek, S / Tuynman, J / De Bie, B / de Vogel, A L / van Wely, M / Mijatovic, V

    Human reproduction (Oxford, England)

    2023  Volume 38, Issue 12, Page(s) 2433–2446

    Abstract: ... for travel and hotel costs as an invited speaker from ESHRE. This was outside the scope of this study. M.v.W ... reports that she is a Co-Ed of Cochrane Gynecology and Fertility. V.M. reports receiving travel and ... of reproductive medicine (V.M.) of the Amsterdam UMC, location VUmc, has received several research and educational grants ...

    Abstract Study question: What is the influence of dietary interventions, namely the low fermentable oligo-, di-, mono-saccharides, and polyols (Low FODMAP) diet and endometriosis diet, on endometriosis-related pain and quality of life (QoL) compared to a control group?
    Summary answer: After adhering to a dietary intervention for 6 months, women with endometriosis reported less pain and an improved QoL compared to baseline whereas, compared to the control group, they reported less bloating and a better QoL in 3 of 11 domains.
    What is known already: Standard endometriosis treatment can be insufficient or may be accompanied by unacceptable side effects. This has resulted in an increasing interest in self-management strategies, including the appliance of the Low FODMAP diet and the endometriosis diet (an experience-based avoidance diet, developed by women with endometriosis). The Low FODMAP diet has previously been found effective in reducing endometriosis-related pain symptoms, whereas only limited studies are available on the efficacy of the endometriosis diet. A survey study recently found the endometriosis diet effective in improving QoL but currently no guidelines on use of the diet exist.
    Study design, size, duration: A prospective one-center pilot study was performed between April 2021 and December 2022. Participants could choose between adherence to a diet-the Low FODMAP diet or endometriosis diet-or no diet (control group). Women adhering to a diet received extensive guidance from a dietician in training. The follow-up period was 6 months for all three groups. For all outcomes, women adhering to the diets were compared to their baseline situation and to the control group.
    Participants/materials, setting, methods: We included women diagnosed with endometriosis (surgically and/or by radiologic imaging) who reported pain scores ≥3 cm on the visual analogue score (0-10 cm) for dysmenorrhea, deep dyspareunia, and/or chronic pelvic pain. The primary endpoint focused on pain reduction for all pain symptoms, including dysuria, bloating, and tiredness. Secondary endpoints, assessed via questionnaires, focused on QoL, gastro-intestinal health, and diet adherence.
    Main results and the role of chance: A total of 62 participants were included in the low FODMAP diet (n = 22), endometriosis diet (n = 21), and control group (n = 19). Compared to their baseline pain scores, participants adhering to a diet reported less pain in four of six symptoms (range P < 0.001 to P = 0.012) and better scores in 6 of 11 QoL domains (range P < 0.001 to P = 0.023) after 6 months. Compared to the control group, analyzed longitudinally over the 6-month follow-up period, participants applying a diet reported significant less bloating (P = 0.049), and better scores in 3 of 11 QoL domains (range P = 0.002 to P = 0.035).
    Limitations, reasons for caution: No sample size was calculated since efficacy data were lacking in the literature. In order to optimize dietary adherence, randomization was not applied, possibly resulting in selection bias.
    Wider implications of the findings: Our study suggests that women could benefit from adherence to a dietary intervention, since we found lower pain scores and better QoL after 6 months. However, caution is implied since this is a pilot study, no sample size was calculated, and data on long-term effects (>6 months) are lacking. The results of this pilot study underline the importance of further research and the drawing up of guidelines.
    Study funding/competing interest(s): A.v.H. reports receiving a travel grant from Merck outside the scope of this study. J.W., S.V., J.T., and B.D.B. have no conflicts of interest to report. A.d.V. reports having received KP-register points for internship guidance of J.W., performing paid consultations with endometriosis patients outside the study and receiving reimbursements for educational lectures at the local hospital (Albert Schweitzer Ziekenhuis, Dordrecht, the Netherlands). A.S. reports having received expenses for travel and hotel costs as an invited speaker from ESHRE. This was outside the scope of this study. M.v.W. reports that she is a Co-Ed of Cochrane Gynecology and Fertility. V.M. reports receiving travel and speaker's fees from Guerbet and research grants from Guerbet, Merck and Ferring. The department of reproductive medicine (V.M.) of the Amsterdam UMC, location VUmc, has received several research and educational grants from Guerbet, Merck and Ferring not related to the submitted work.
    Trial registration number: N/A.
    MeSH term(s) Humans ; Female ; Endometriosis/complications ; Prospective Studies ; Quality of Life ; Control Groups ; Pilot Projects ; Pelvic Pain/therapy ; Pelvic Pain/complications
    Language English
    Publishing date 2023-10-25
    Publishing country England
    Document type Journal Article
    ZDB-ID 632776-x
    ISSN 1460-2350 ; 0268-1161 ; 1477-741X
    ISSN (online) 1460-2350
    ISSN 0268-1161 ; 1477-741X
    DOI 10.1093/humrep/dead214
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Deep endometriosis muscular infiltration of the bowel wall: correlation between MRI and histopathology.

    Vlek, S L / Zwart, E A H / Schreurs, A M F / van Waesberghe, J H T M / Bleeker, M C G / Mijatovic, V / Tuynman, J B

    Clinical radiology

    2023  Volume 78, Issue 9, Page(s) 661–665

    Abstract: Aim: To assess the correlation between magnetic resonance imaging (MRI) and histopathology for predicting muscular infiltration of endometriosis in the bowel wall in patients undergoing colorectal resection.: Materials and methods: All consecutive ... ...

    Abstract Aim: To assess the correlation between magnetic resonance imaging (MRI) and histopathology for predicting muscular infiltration of endometriosis in the bowel wall in patients undergoing colorectal resection.
    Materials and methods: All consecutive patients who underwent colorectal surgery for deep endometriosis (DE) with a preoperative MRI in a single tertiary care referral hospital between 2001 and 2019 were included in a prospective cohort. MRI images were revised by a single blinded radiologist. The MRI results regarding the infiltration depth (serosal, muscular, submucosal, or mucosal) and lesion expansion of DE were compared to histopathology.
    Results: A total of 84 patients were eligible for evaluation. A sensitivity of 89% and positive predictive value of 97% was shown for predicting muscular involvement of the bowel wall.
    Conclusion: This study showed that MRI is valuable in predicting the involvement of the muscular layer of the colorectal wall. Therefore, in patients with symptomatic pelvic bowel endometriosis MRI is a useful tool in guiding the extent of colorectal surgery.
    MeSH term(s) Female ; Humans ; Rectal Diseases ; Endometriosis/diagnostic imaging ; Endometriosis/surgery ; Endometriosis/pathology ; Prospective Studies ; Retrospective Studies ; Magnetic Resonance Imaging/methods ; Colorectal Neoplasms/surgery ; Laparoscopy/methods
    Language English
    Publishing date 2023-05-09
    Publishing country England
    Document type Journal Article
    ZDB-ID 391227-9
    ISSN 1365-229X ; 0009-9260
    ISSN (online) 1365-229X
    ISSN 0009-9260
    DOI 10.1016/j.crad.2023.04.010
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Combined throat/nasal swab sampling for SARS-CoV-2 is equivalent to nasopharyngeal sampling.

    Vlek, A L M / Wesselius, T S / Achterberg, R / Thijsen, S F T

    European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology

    2020  Volume 40, Issue 1, Page(s) 193–195

    Abstract: Purpose: PCR on a nasopharyngeal sample is the reference method for the detection of SARS-nCoV-2. However, combined throat/nasal sampling as a testing method has several advantages. We compared the combined throat/nasal sampling with nasopharyngeal ... ...

    Abstract Purpose: PCR on a nasopharyngeal sample is the reference method for the detection of SARS-nCoV-2. However, combined throat/nasal sampling as a testing method has several advantages. We compared the combined throat/nasal sampling with nasopharyngeal sampling for detection of SARS-CoV-2 in healthcare workers suspected of COVID-19.
    Methods: In 107 healthcare workers with symptoms of COVID-19, combined throat/nasal sampling and nasopharyngeal sampling was performed. Detection of SARS-CoV-2 was performed by RT-PCR targeting.
    Results: A total of 80 healthcare workers (74.8%) tested negative with both sampling methods, and 25 healthcare workers (23.4%) tested positive with both sampling methods. There were two discrepant results with positive PCR in combined throat/nasal swabs and negative PCR in nasopharyngeal swabs (1.9%). The κ index for concordance between the 2 sampling methods was high (0.95). The median cycle threshold (Ct) value of PCR on nasopharyngeal samples was significantly lower than the Ct value of PCR on combined throat/nasal samples (19 (IQR 17-20) versus 21 (IQR 18-29) cycles, p value 0.01).
    Conclusion: Combined throat/nasal swabs yield a similar sensitivity to detect SARS-CoV-2 as nasopharyngeal swabs and are a good alternative sampling method, despite a lower Ct value for the nasopharyngeal samples.
    MeSH term(s) Adult ; COVID-19/diagnosis ; COVID-19 Nucleic Acid Testing/methods ; Health Personnel/statistics & numerical data ; Humans ; Middle Aged ; Nasopharynx/virology ; Nose/virology ; Pharynx/virology ; RNA, Viral/isolation & purification ; SARS-CoV-2/genetics ; SARS-CoV-2/isolation & purification ; Specimen Handling/methods ; Young Adult
    Chemical Substances RNA, Viral
    Keywords covid19
    Language English
    Publishing date 2020-07-14
    Publishing country Germany
    Document type Comparative Study ; Journal Article
    ZDB-ID 603155-9
    ISSN 1435-4373 ; 0934-9723 ; 0722-2211
    ISSN (online) 1435-4373
    ISSN 0934-9723 ; 0722-2211
    DOI 10.1007/s10096-020-03972-y
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Book ; Article ; Online: Ontology learning with machine learning techniques

    Vlek, R.J. / van Rooijen, L.A. / Jacobs, K.M.J.

    2020  

    Abstract: In this project we aimed to find out if and how techniques from artificial intelligence (AI) can be used to support the process of ontology creation and make it more efficient. ...

    Abstract In this project we aimed to find out if and how techniques from artificial intelligence (AI) can be used to support the process of ontology creation and make it more efficient.
    Keywords Life Science
    Language English
    Publishing country nl
    Document type Book ; Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article ; Online: The use of growth hormone therapy in adults with Prader-Willi syndrome: A systematic review.

    Frixou, Mikaela / Vlek, Diane / Lucas-Herald, Angela K / Keir, Lindsay / Kyriakou, Andreas / Shaikh, M Guftar

    Clinical endocrinology

    2020  Volume 94, Issue 4, Page(s) 645–655

    Abstract: Objective: Despite clear benefits in the management of children with Prader-Willi syndrome (PWS), the role of growth hormone (GH) in adults is unclear. The aim of this study was to conduct a systematic review to evaluate the effects of GH on body ... ...

    Abstract Objective: Despite clear benefits in the management of children with Prader-Willi syndrome (PWS), the role of growth hormone (GH) in adults is unclear. The aim of this study was to conduct a systematic review to evaluate the effects of GH on body composition, bone health and cardiovascular health in adults with PWS.
    Design: A systematic computerized literature search of the PubMed database was conducted by two independent reviewers. Inclusion criteria were individuals over the age of 16 years with a genetic diagnosis of PWS who had received GH therapy, together with assessment of body composition, bone health or cardiovascular health.
    Results: Twenty full-text papers met the inclusion criteria, encompassing 364 unique patients. No differences in body mass index (BMI) were noted, although 2 studies reported increased BMI after GH cessation. Data demonstrated statistically significant increases in lean body mass and reductions in percentage fat mass. Studies reported inconsistent effects of GH on cholesterol and echocardiography parameters. No studies reported differences in bone mineral density, although one reported improved bone geometry. Minor adverse events including pretibial oedema, headache and transient impaired glucose tolerance were reported in 7 studies.
    Conclusions: These data suggest that GH is safe and well tolerated in adults with PWS, with evidence of improvement in body composition. Further longitudinal studies are still required to investigate the effects of GH on bone and cardiovascular health. Where GH is used in adults with PWS, this should be managed by a specialist multidisciplinary team with regular monitoring initiated.
    MeSH term(s) Adolescent ; Adult ; Body Composition ; Bone Density ; Child ; Growth Hormone ; Human Growth Hormone/therapeutic use ; Humans ; Prader-Willi Syndrome/drug therapy
    Chemical Substances Human Growth Hormone (12629-01-5) ; Growth Hormone (9002-72-6)
    Language English
    Publishing date 2020-12-09
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Systematic Review
    ZDB-ID 121745-8
    ISSN 1365-2265 ; 0300-0664
    ISSN (online) 1365-2265
    ISSN 0300-0664
    DOI 10.1111/cen.14372
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Conference proceedings ; Online: How AI can provide an overview of protein quality from literature

    Vlek, R.J. / Heuer, H.E.J.M. / van Rooijen, L.A. / van der Sluis, A.A. / de Jong, G.A.H. / Mes, J.J.

    2023  

    Abstract: A transition to diets with alternative, primarily plant-based, protein sources can benefit both climate and public health, but requires a better insight in their protein quality. Traditional literature studies are effortful and often incomplete, which is ...

    Abstract A transition to diets with alternative, primarily plant-based, protein sources can benefit both climate and public health, but requires a better insight in their protein quality. Traditional literature studies are effortful and often incomplete, which is why this project explored the potential of artificial intelligence (AI) and natural language processing (NLP) to perform large scale, automated extraction of information on protein digestibility and protein quality from scientific literature.Information on protein and amino acid (AA) digestibility was extracted, along with contextual details, such as the protein source, study type (animal or human in vivo trial, in vitro work), and any processing methods potentially affecting the observed AA digestibility. The extracted information was semantically standardised, normalised, and validated to our best extent possible. It was enriched with uniform recalculations of the amino-acid score (AAS), protein-digestibility corrected amino acid score (PDCAAS) and digestible indispensable amino acid score (DIAAS) against the most recent FAO (2013) reference values, as well as with information from established knowledge graphs (e.g. NCBI Taxonomy, FoodOn). Provenance was stored alongside the extracted data, so that it can be traced back to its origin. Since the extraction process is automated and takes only a few minutes per document, it can easily be repeated to include information from newly appearing publications, with one update already planned. The AI extraction process was validated against the output of a manually conducted systematic literature review. Using the AI process, a preliminary dataset was generated with information from 463 scientific publications, containing 77 different protein sources and 261 lines of data on their protein quality and/or AA digestibility.This AI supported dataset provides a single point of access to information on protein quality that was previously scattered, yielding insights on variation within and between protein sources, and ...
    Keywords Life Science
    Subject code 612
    Language English
    Publishing country nl
    Document type Article ; Conference proceedings ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  8. Article ; Online: Reliability and validity of multicentre surveillance of surgical site infections after colorectal surgery.

    Verberk, Janneke D M / van Rooden, Stephanie M / Hetem, David J / Wunderink, Herman F / Vlek, Anne L M / Meijer, Corianne / van Ravensbergen, Eva A H / Huijskens, Elisabeth G W / Vainio, Saara J / Bonten, Marc J M / van Mourik, Maaike S M

    Antimicrobial resistance and infection control

    2022  Volume 11, Issue 1, Page(s) 10

    Abstract: Background: Surveillance is the cornerstone of surgical site infection prevention programs. The validity of the data collection and awareness of vulnerability to inter-rater variation is crucial for correct interpretation and use of surveillance data. ... ...

    Abstract Background: Surveillance is the cornerstone of surgical site infection prevention programs. The validity of the data collection and awareness of vulnerability to inter-rater variation is crucial for correct interpretation and use of surveillance data. The aim of this study was to investigate the reliability and validity of surgical site infection (SSI) surveillance after colorectal surgery in the Netherlands.
    Methods: In this multicentre prospective observational study, seven Dutch hospitals performed SSI surveillance after colorectal surgeries performed in 2018 and/or 2019. When executing the surveillance, a local case assessment was performed to calculate the overall percentage agreement between raters within hospitals. Additionally, two case-vignette assessments were performed to estimate intra-rater and inter-rater reliability by calculating a weighted Cohen's Kappa and Fleiss' Kappa coefficient. To estimate the validity, answers of the two case-vignettes questionnaires were compared with the answers of an external medical panel.
    Results: 1111 colorectal surgeries were included in this study with an overall SSI incidence of 8.8% (n = 98). From the local case assessment it was estimated that the overall percent agreement between raters within a hospital was good (mean 95%, range 90-100%). The Cohen's Kappa estimated for the intra-rater reliability of case-vignette review varied from 0.73 to 1.00, indicating substantial to perfect agreement. The inter-rater reliability within hospitals showed more variation, with Kappa estimates ranging between 0.61 and 0.94. In total, 87.9% of the answers given by the raters were in accordance with the medical panel.
    Conclusions: This study showed that raters were consistent in their SSI-ascertainment (good reliability), but improvements can be made regarding the accuracy (moderate validity). Accuracy of surveillance may be improved by providing regular training, adapting definitions to reduce subjectivity, and by supporting surveillance through automation.
    MeSH term(s) Adult ; Aged ; Aged, 80 and over ; Colorectal Surgery/statistics & numerical data ; Epidemiological Monitoring ; Female ; Humans ; Male ; Middle Aged ; Netherlands/epidemiology ; Prospective Studies ; Reproducibility of Results ; Surgical Wound Infection/epidemiology ; Surgical Wound Infection/microbiology
    Language English
    Publishing date 2022-01-21
    Publishing country England
    Document type Journal Article ; Observational Study ; Research Support, Non-U.S. Gov't
    ZDB-ID 2666706-X
    ISSN 2047-2994 ; 2047-2994
    ISSN (online) 2047-2994
    ISSN 2047-2994
    DOI 10.1186/s13756-022-01050-w
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Combined throat/nasal swab sampling for SARS-CoV-2 is equivalent to nasopharyngeal sampling

    Vlek, A. L. M. / Wesselius, T. S. / Achterberg, R. / Thijsen, S. F. T.

    European Journal of Clinical Microbiology & Infectious Diseases ; ISSN 0934-9723 1435-4373

    2020  

    Keywords Microbiology (medical) ; Infectious Diseases ; General Medicine ; covid19
    Language English
    Publisher Springer Science and Business Media LLC
    Publishing country us
    Document type Article ; Online
    DOI 10.1007/s10096-020-03972-y
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  10. Article: Combined throat/nasal swab sampling for SARS-CoV-2 is equivalent to nasopharyngeal sampling

    Vlek, A L M / Wesselius, T S / Achterberg, R / Thijsen, S F T

    Eur. j. clin. microbiol. infect. dis

    Abstract: PURPOSE: PCR on a nasopharyngeal sample is the reference method for the detection of SARS-nCoV-2. However, combined throat/nasal sampling as a testing method has several advantages. We compared the combined throat/nasal sampling with nasopharyngeal ... ...

    Abstract PURPOSE: PCR on a nasopharyngeal sample is the reference method for the detection of SARS-nCoV-2. However, combined throat/nasal sampling as a testing method has several advantages. We compared the combined throat/nasal sampling with nasopharyngeal sampling for detection of SARS-CoV-2 in healthcare workers suspected of COVID-19. METHODS: In 107 healthcare workers with symptoms of COVID-19, combined throat/nasal sampling and nasopharyngeal sampling was performed. Detection of SARS-CoV-2 was performed by RT-PCR targeting. RESULTS: A total of 80 healthcare workers (74.8%) tested negative with both sampling methods, and 25 healthcare workers (23.4%) tested positive with both sampling methods. There were two discrepant results with positive PCR in combined throat/nasal swabs and negative PCR in nasopharyngeal swabs (1.9%). The κ index for concordance between the 2 sampling methods was high (0.95). The median cycle threshold (Ct) value of PCR on nasopharyngeal samples was significantly lower than the Ct value of PCR on combined throat/nasal samples (19 (IQR 17-20) versus 21 (IQR 18-29) cycles, p value 0.01). CONCLUSION: Combined throat/nasal swabs yield a similar sensitivity to detect SARS-CoV-2 as nasopharyngeal swabs and are a good alternative sampling method, despite a lower Ct value for the nasopharyngeal samples.
    Keywords covid19
    Publisher WHO
    Document type Article
    Note WHO #Covidence: #647072
    Database COVID19

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