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  1. Article ; Online: Select Atrophied Regions in Alzheimer disease (SARA)

    Lauren N. Koenig / Gregory S. Day / Amber Salter / Sarah Keefe / Laura M. Marple / Justin Long / Pamela LaMontagne / Parinaz Massoumazada / B. Joy Snider / Manasa Kanthamneni / Cyrus A. Raji / Nupur Ghoshal / Brian A. Gordon / Michelle Miller-Thomas / John C. Morris / Joshua S. Shimony / Tammie L.S. Benzinger

    NeuroImage: Clinical, Vol 26, Iss , Pp - (2020)

    An improved volumetric model for identifying Alzheimer disease dementia

    2020  

    Abstract: Introduction: Volumetric biomarkers for Alzheimer disease (AD) are attractive due to their wide availability and ease of administration, but have traditionally shown lower diagnostic accuracy than measures of neuropathological contributors to AD. Our ... ...

    Abstract Introduction: Volumetric biomarkers for Alzheimer disease (AD) are attractive due to their wide availability and ease of administration, but have traditionally shown lower diagnostic accuracy than measures of neuropathological contributors to AD. Our purpose was to optimize the diagnostic specificity of structural MRIs for AD using quantitative, data-driven techniques. Methods: This retrospective study assembled several non-overlapping cohorts (total n = 1287) with publicly available data and clinical patients from Barnes–Jewish Hospital (data gathered 1990–2018). The Normal Aging Cohort (n = 383) contained amyloid biomarker negative, cognitively normal (CN) participants, and provided a basis for determining age-related atrophy in other cohorts. The Training (n = 216) and Test (n = 109) Cohorts contained participants with symptomatic AD and CN controls. Classification models were developed in the Training Cohort and compared in the Test Cohort using the receiver operating characteristics areas under curve (AUCs). Additional model comparisons were done in the Clinical Cohort (n = 579), which contained patients who were diagnosed with dementia due to various etiologies in a tertiary care outpatient memory clinic. Results: While the Normal Aging Cohort showed regional age-related atrophy, classification models were not improved by including age as a predictor or by using volumetrics adjusted for age-related atrophy. The optimal model used multiple regions (hippocampal volume, inferior lateral ventricle volume, amygdala volume, entorhinal thickness, and inferior parietal thickness) and was able to separate AD and CN controls in the Test Cohort with an AUC of 0.961. In the Clinical Cohort, this model separated AD from non-AD diagnoses with an AUC 0.820, an incrementally greater separation of the cohort than by hippocampal volume alone (AUC of 0.801, p = 0.06). Greatest separation was seen for AD vs. frontotemporal dementia and for AD vs. non-neurodegenerative diagnoses. Conclusions: Volumetric biomarkers ...
    Keywords Alzheimer disease ; Volumetrics ; Diagnostic biomarkers ; MRI ; Aging ; Computer applications to medicine. Medical informatics ; R858-859.7 ; Neurology. Diseases of the nervous system ; RC346-429
    Subject code 610
    Language English
    Publishing date 2020-01-01T00:00:00Z
    Publisher Elsevier
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  2. Article ; Online: Select Atrophied Regions in Alzheimer disease (SARA): An improved volumetric model for identifying Alzheimer disease dementia.

    Koenig, Lauren N / Day, Gregory S / Salter, Amber / Keefe, Sarah / Marple, Laura M / Long, Justin / LaMontagne, Pamela / Massoumzadeh, Parinaz / Snider, B Joy / Kanthamneni, Manasa / Raji, Cyrus A / Ghoshal, Nupur / Gordon, Brian A / Miller-Thomas, Michelle / Morris, John C / Shimony, Joshua S / Benzinger, Tammie L S

    NeuroImage. Clinical

    2020  Volume 26, Page(s) 102248

    Abstract: Introduction: Volumetric biomarkers for Alzheimer disease (AD) are attractive due to their wide availability and ease of administration, but have traditionally shown lower diagnostic accuracy than measures of neuropathological contributors to AD. Our ... ...

    Abstract Introduction: Volumetric biomarkers for Alzheimer disease (AD) are attractive due to their wide availability and ease of administration, but have traditionally shown lower diagnostic accuracy than measures of neuropathological contributors to AD. Our purpose was to optimize the diagnostic specificity of structural MRIs for AD using quantitative, data-driven techniques.
    Methods: This retrospective study assembled several non-overlapping cohorts (total n = 1287) with publicly available data and clinical patients from Barnes-Jewish Hospital (data gathered 1990-2018). The Normal Aging Cohort (n = 383) contained amyloid biomarker negative, cognitively normal (CN) participants, and provided a basis for determining age-related atrophy in other cohorts. The Training (n = 216) and Test (n = 109) Cohorts contained participants with symptomatic AD and CN controls. Classification models were developed in the Training Cohort and compared in the Test Cohort using the receiver operating characteristics areas under curve (AUCs). Additional model comparisons were done in the Clinical Cohort (n = 579), which contained patients who were diagnosed with dementia due to various etiologies in a tertiary care outpatient memory clinic.
    Results: While the Normal Aging Cohort showed regional age-related atrophy, classification models were not improved by including age as a predictor or by using volumetrics adjusted for age-related atrophy. The optimal model used multiple regions (hippocampal volume, inferior lateral ventricle volume, amygdala volume, entorhinal thickness, and inferior parietal thickness) and was able to separate AD and CN controls in the Test Cohort with an AUC of 0.961. In the Clinical Cohort, this model separated AD from non-AD diagnoses with an AUC 0.820, an incrementally greater separation of the cohort than by hippocampal volume alone (AUC of 0.801, p = 0.06). Greatest separation was seen for AD vs. frontotemporal dementia and for AD vs. non-neurodegenerative diagnoses.
    Conclusions: Volumetric biomarkers distinguished individuals with symptomatic AD from CN controls and other dementia types but were not improved by controlling for normal aging.
    MeSH term(s) Aged ; Aged, 80 and over ; Alzheimer Disease/diagnostic imaging ; Alzheimer Disease/pathology ; Atrophy/diagnostic imaging ; Atrophy/etiology ; Atrophy/pathology ; Brain/diagnostic imaging ; Brain/pathology ; Female ; Humans ; Image Interpretation, Computer-Assisted/methods ; Magnetic Resonance Imaging ; Male ; Middle Aged ; Neuroimaging/methods ; Retrospective Studies
    Language English
    Publishing date 2020-03-16
    Publishing country Netherlands
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 2701571-3
    ISSN 2213-1582 ; 2213-1582
    ISSN (online) 2213-1582
    ISSN 2213-1582
    DOI 10.1016/j.nicl.2020.102248
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Electron microscopy identification of SARS-COV-2: what is the evidence?

    Giannico, Giovanna A / Miller, Sara E

    Cardiovascular pathology : the official journal of the Society for Cardiovascular Pathology

    2021  Volume 52, Page(s) 107338

    MeSH term(s) Autopsy ; COVID-19 ; Cities ; Humans ; Microscopy, Electron ; SARS-CoV-2 ; Texas ; United States
    Language English
    Publishing date 2021-04-20
    Publishing country United States
    Document type Letter ; Comment
    ZDB-ID 1134600-0
    ISSN 1879-1336 ; 1054-8807
    ISSN (online) 1879-1336
    ISSN 1054-8807
    DOI 10.1016/j.carpath.2021.107338
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: A conversation with Sara Miller McCune, founder of the SAGE publishing group

    McCune, Sara Miller / Bianchi, Carmen

    Family business review : journal of the Family Firm Institute Vol. 22, No. 4 , p. 363-365

    2009  Volume 22, Issue 4, Page(s) 363–365

    Author's details Carmen Bianchi
    Language English
    Publisher Blackwell
    Publishing place Malden, Mass.
    Document type Article
    ZDB-ID 1129435-8
    Database ECONomics Information System

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  5. Article: Single cell susceptibility to SARS-CoV-2 infection is driven by variable cell states.

    Reffsin, Sam / Miller, Jesse / Ayyanathan, Kasirajan / Dunagin, Margaret C / Jain, Naveen / Schultz, David C / Cherry, Sara / Raj, Arjun

    bioRxiv : the preprint server for biology

    2023  

    Abstract: ... lung epithelial cells that are highly susceptible to infection with SARS-CoV-2. The transcriptional ...

    Abstract The ability of a virus to infect a cell type is at least in part determined by the presence of host factors required for the viral life cycle. However, even within cell types that express known factors needed for infection, not every cell is equally susceptible, suggesting that our knowledge of the full spectrum of factors that promote infection is incomplete. Profiling the most susceptible subsets of cells within a population may reveal additional factors that promote infection. However, because viral infection dramatically alters the state of the cell, new approaches are needed to reveal the state of these cells prior to infection with virus. Here, we used single-cell clone tracing to retrospectively identify and characterize lung epithelial cells that are highly susceptible to infection with SARS-CoV-2. The transcriptional state of these highly susceptible cells includes markers of retinoic acid signaling and epithelial differentiation. Loss of candidate factors identified by our approach revealed that many of these factors play roles in viral entry. Moreover, a subset of these factors exert control over the infectable cell state itself, regulating the expression of key factors associated with viral infection and entry. Analysis of patient samples revealed the heterogeneous expression of these factors across both cells and patients
    Language English
    Publishing date 2023-07-07
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2023.07.06.547955
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Electron microscopy of SARS-CoV-2: a challenging task.

    Goldsmith, Cynthia S / Miller, Sara E / Martines, Roosecelis B / Bullock, Hannah A / Zaki, Sherif R

    Lancet (London, England)

    2020  Volume 395, Issue 10238, Page(s) e99

    MeSH term(s) Betacoronavirus ; COVID-19 ; Coronavirus Infections ; Endothelial Cells ; Humans ; Microscopy, Electron ; Pandemics ; Pneumonia, Viral ; SARS Virus ; SARS-CoV-2
    Keywords covid19
    Language English
    Publishing date 2020-05-19
    Publishing country England
    Document type Letter ; Comment
    ZDB-ID 3306-6
    ISSN 1474-547X ; 0023-7507 ; 0140-6736
    ISSN (online) 1474-547X
    ISSN 0023-7507 ; 0140-6736
    DOI 10.1016/S0140-6736(20)31188-0
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Pyrimidine inhibitors synergize with nucleoside analogues to block SARS-CoV-2.

    Schultz, David C / Johnson, Robert M / Ayyanathan, Kasirajan / Miller, Jesse / Whig, Kanupriya / Kamalia, Brinda / Dittmar, Mark / Weston, Stuart / Hammond, Holly L / Dillen, Carly / Ardanuy, Jeremy / Taylor, Louis / Lee, Jae Seung / Li, Minghua / Lee, Emily / Shoffler, Clarissa / Petucci, Christopher / Constant, Samuel / Ferrer, Marc /
    Thaiss, Christoph A / Frieman, Matthew B / Cherry, Sara

    Nature

    2022  Volume 604, Issue 7904, Page(s) 134–140

    Abstract: The SARS-CoV-2 virus has infected more than 261 million people and has led to more than 5 million ...

    Abstract The SARS-CoV-2 virus has infected more than 261 million people and has led to more than 5 million deaths in the past year and a half
    MeSH term(s) Adenosine Monophosphate/analogs & derivatives ; Alanine/analogs & derivatives ; Antiviral Agents/pharmacology ; COVID-19/virology ; Cell Line ; Cytidine/analogs & derivatives ; Drug Evaluation, Preclinical ; Humans ; Hydroxylamines ; Nucleosides/analogs & derivatives ; Nucleosides/pharmacology ; Pyrimidines/pharmacology ; SARS-CoV-2/drug effects ; COVID-19 Drug Treatment
    Chemical Substances Antiviral Agents ; Hydroxylamines ; Nucleosides ; Pyrimidines ; remdesivir (3QKI37EEHE) ; Adenosine Monophosphate (415SHH325A) ; Cytidine (5CSZ8459RP) ; pyrimidine (K8CXK5Q32L) ; Alanine (OF5P57N2ZX) ; molnupiravir (YA84KI1VEW)
    Language English
    Publishing date 2022-02-07
    Publishing country England
    Document type Journal Article
    ZDB-ID 120714-3
    ISSN 1476-4687 ; 0028-0836
    ISSN (online) 1476-4687
    ISSN 0028-0836
    DOI 10.1038/s41586-022-04482-x
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: SARS-CoV-2 Omicron (B.1.1.529) shows minimal neurotropism in a double-humanized mouse model.

    Alves, Rubens Prince Dos Santos / Wang, Ying-Ting / Mikulski, Zbigniew / McArdle, Sara / Shafee, Norazizah / Valentine, Kristen M / Miller, Robyn / Verma, Shailendra Kumar / Batiz, Fernanda Ana Sosa / Maule, Erin / Nguyen, Michael N / Timis, Julia / Mann, Colin / Zandonatti, Michelle / Alarcon, Suzie / Rowe, Jenny / Kronenberg, Mitchell / Weiskopf, Daniela / Sette, Alessandro /
    Hastie, Kathryn / Saphire, Erica Ollmann / Festin, Stephen / Kim, Kenneth / Shresta, Sujan

    Antiviral research

    2023  Volume 212, Page(s) 105580

    Abstract: Although severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) initially ... known about the relative neurotropism of SARS-CoV-2 variants of concern (VOCs), including Omicron (B.1.1 ...

    Abstract Although severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) initially infects the respiratory tract, it also directly or indirectly affects other organs, including the brain. However, little is known about the relative neurotropism of SARS-CoV-2 variants of concern (VOCs), including Omicron (B.1.1.529), which emerged in November 2021 and has remained the dominant pathogenic lineage since then. To address this gap, we examined the relative ability of Omicron, Beta (B.1.351), and Delta (B.1.617.2) to infect the brain in the context of a functional human immune system by using human angiotensin-converting enzyme 2 (hACE2) knock-in triple-immunodeficient NGC mice with or without reconstitution with human CD34
    MeSH term(s) Animals ; Humans ; Mice ; SARS-CoV-2 ; COVID-19 ; Brain ; Antiviral Agents ; Disease Models, Animal
    Chemical Substances Antiviral Agents
    Language English
    Publishing date 2023-03-20
    Publishing country Netherlands
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 306628-9
    ISSN 1872-9096 ; 0166-3542
    ISSN (online) 1872-9096
    ISSN 0166-3542
    DOI 10.1016/j.antiviral.2023.105580
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Electron microscopy of SARS-CoV-2

    Goldsmith, Cynthia S / Miller, Sara E / Martines, Roosecelis B / Bullock, Hannah A / Zaki, Sherif R

    The Lancet

    a challenging task

    2020  Volume 395, Issue 10238, Page(s) e99

    Keywords General Medicine ; covid19
    Language English
    Publisher Elsevier BV
    Publishing country us
    Document type Article ; Online
    ZDB-ID 3306-6
    ISSN 1474-547X ; 0023-7507 ; 0140-6736
    ISSN (online) 1474-547X
    ISSN 0023-7507 ; 0140-6736
    DOI 10.1016/s0140-6736(20)31188-0
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  10. Article ; Online: Prefusion-stabilized SARS-CoV-2 S2-only antigen provides protection against SARS-CoV-2 challenge.

    Hsieh, Ching-Lin / Leist, Sarah R / Miller, Emily Happy / Zhou, Ling / Powers, John M / Tse, Alexandra L / Wang, Albert / West, Ande / Zweigart, Mark R / Schisler, Jonathan C / Jangra, Rohit K / Chandran, Kartik / Baric, Ralph S / McLellan, Jason S

    Nature communications

    2024  Volume 15, Issue 1, Page(s) 1553

    Abstract: Ever-evolving SARS-CoV-2 variants of concern (VOCs) have diminished the effectiveness ... we rationally engineer the sequence-conserved S2 subunit of the SARS-CoV-2 spike protein and characterize ... neutralizing responses against several sarbecoviruses and protects female BALB/c mice from mouse-adapted SARS ...

    Abstract Ever-evolving SARS-CoV-2 variants of concern (VOCs) have diminished the effectiveness of therapeutic antibodies and vaccines. Developing a coronavirus vaccine that offers a greater breadth of protection against current and future VOCs would eliminate the need to reformulate COVID-19 vaccines. Here, we rationally engineer the sequence-conserved S2 subunit of the SARS-CoV-2 spike protein and characterize the resulting S2-only antigens. Structural studies demonstrate that the introduction of interprotomer disulfide bonds can lock S2 in prefusion trimers, although the apex samples a continuum of conformations between open and closed states. Immunization with prefusion-stabilized S2 constructs elicits broadly neutralizing responses against several sarbecoviruses and protects female BALB/c mice from mouse-adapted SARS-CoV-2 lethal challenge and partially protects female BALB/c mice from mouse-adapted SARS-CoV lethal challenge. These engineering and immunogenicity results should inform the development of next-generation pan-coronavirus therapeutics and vaccines.
    MeSH term(s) Female ; Animals ; Humans ; Mice ; SARS-CoV-2 ; COVID-19 Vaccines ; COVID-19/prevention & control ; Antigens, Viral/genetics ; Mice, Inbred BALB C ; Spike Glycoprotein, Coronavirus/genetics ; Antibodies, Neutralizing ; Antibodies, Viral
    Chemical Substances COVID-19 Vaccines ; spike protein, SARS-CoV-2 ; Antigens, Viral ; Spike Glycoprotein, Coronavirus ; Antibodies, Neutralizing ; Antibodies, Viral
    Language English
    Publishing date 2024-02-20
    Publishing country England
    Document type Journal Article
    ZDB-ID 2553671-0
    ISSN 2041-1723 ; 2041-1723
    ISSN (online) 2041-1723
    ISSN 2041-1723
    DOI 10.1038/s41467-024-45404-x
    Database MEDical Literature Analysis and Retrieval System OnLINE

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