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  1. Article: Editorial: Recent advances in crop diseases associated with plant vascular-colonizing bacteria.

    Wei, Wei / Ait Barka, Essaid / Eichmeier, Ales

    Frontiers in plant science

    2023  Volume 14, Page(s) 1171973

    Language English
    Publishing date 2023-03-30
    Publishing country Switzerland
    Document type Editorial
    ZDB-ID 2613694-6
    ISSN 1664-462X
    ISSN 1664-462X
    DOI 10.3389/fpls.2023.1171973
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: First report of Neofusicoccum parvum causing stem blight and dieback of highbush blueberry in the Czech Republic.

    Spetik, Milan / Cechova, Jana / Eichmeier, Ales

    Plant disease

    2023  

    Abstract: ... of both isolates following primers and protocols previously described (Eichmeier et al. 2020). Newly generated ...

    Abstract Neofusicoccum parvum (Pennycook & Samuels) Crous, Slippers & A.J.L. Phillips is a cosmopolitan pathogen causing dieback of multiple diverse woody hosts including highbush blueberry (Vaccinium corymbosum L.). This fungus can survive inside colonized plants without causing any symptoms for several years. Once the endophytic lifestyle is switched to the parasitic one, the symptoms of dieback can rapidly occur (bronze leaves, necroses under the bark, apoplexy) and the plant usually declines within a few weeks (Slipper and Wingfield 2007). In August 2022, blueberry plants displaying symptoms described above were observed in a production orchard located in Hovorany, the Czech Republic. Around 3 % of 1000 observed plants were symptomatic. In order to identify the pathogen, leaves, stems and roots of three diseased plants were collected, sectioned into small pieces (5 × 5 mm), surface sterilized (60 s in 75% ethanol, followed by 60 s in 1% sodium hypochlorite and rinsed three times using sterile distilled water), plated on potato dextrose agar (PDA) supplemented with 0.5 g/liter of streptomycin sulfate (PDAS) (Biosynth, Staad, Switzerland) and incubated at 25°C for 2 weeks at dark. Newly developed mycelia were immediately transferred to fresh PDA plates and purified by single-spore or hyphal-tip isolation. In total 33 fungal isolates were obtained. All the 33 isolates shared similar morphology and resembled Botryosphaeriaceae spp. Colonies on PDA (7 d at 25°C) were felty, white to iron grey in the centre. Conidiomata were observed on sterile pine needles on 2 % water agar (WA) at 25°C under near-UV light after 2 wks (110-220 × 60-175 μm). Conidia (n=30) were cylindrical to ellipsoidal, hyaline, 0(-1)-septate, (3.8-8.1 × 2-3 μm). Two representative isolates were deposited at the Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands (CBS 149846 and CBS 149847). The partial internal transcribed spacer (ITS) regions, beta-tubulin gene (tub2) and translation elongation factor 1-alpha (tef) gene were amplified from genomic DNA of both isolates following primers and protocols previously described (Eichmeier et al. 2020). Newly generated sequences were deposited in NCBI GenBank (acc. nos. ITS: OQ376566, OQ376567; tub2: OQ401701, OQ401702 and tef: OQ401699, OQ401700), being >99% identical (ITS 483/484 nt, tub2 426/430 nt and tef 230/232 nt) with the ex-type ITS (AY236943), tub2 (AY236888) and tef (AY236917) sequences of N. parvum strain CMW9081. Phylogenetically, newly obtained isolates grouped with ex-type and another three cultures of N. parvum in the three gene-based phylogenetic tree with strong 98/1.0 (BP/PP) support. To confirm pathogenicity, one-year-old canes of ten two-year-old V. corymbosum plants grown in pots were wounded by a 5 mm diam cork borer, and a 5-mm mycelial plug of a 7-day-old culture of both (CBS 149846 and CBS 149847) strains (five plants per strain) was inserted into the wound. Ten plants were inoculated with sterile PDA plugs and served as controls. Wounds were covered by sterile wet cotton, sealed with Parafilm® and inoculated plants were maintained in a growth chamber at 20 °C with 12/12 h light/dark period. Within two weeks, inoculated shoots changed colour from green to dark brown and exhibited dark necroses under the bark; after one month inoculated plants declined, while controls remained symptomless. The pathogen was reisolated from the inoculated plants with 100 % re-isolation rate, and its identity confirmed by sequencing ITS region. The experiment was repeated. Neofusicoccum parvum causing dieback of highbush blueberry was already reported from Australia, California, Chile, China, Italy, Mexico, Portugal and Uruguay (Rossman et al. 2023). Pecenka et al. (2021) reported a presence of another pathogen - Lasiodiplodia theobromae (Pat.) Griffon & Maubl. from the same plantation. This suggests that stem blight and dieback of highbush blueberry is caused by more than one Botryosphaeriaceae spp. as it was previously proved by Xu et al. (2015). To the best of our knowledge, this is the first report of stem blight and dieback of highbush blueberry caused by N. parvum in the Czech Republic.
    Language English
    Publishing date 2023-05-10
    Publishing country United States
    Document type Journal Article
    ZDB-ID 754182-x
    ISSN 0191-2917
    ISSN 0191-2917
    DOI 10.1094/PDIS-03-23-0595-PDN
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Combined effect of thyme and clove phenolic compounds on

    Hakalová, Eliška / Čechová, Jana / Tekielska, Dorota A / Eichmeier, Ales / Pothier, Joël F

    Frontiers in microbiology

    2022  Volume 13, Page(s) 1007988

    Abstract: The seed-borne ... ...

    Abstract The seed-borne bacterium
    Language English
    Publishing date 2022-10-28
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2587354-4
    ISSN 1664-302X
    ISSN 1664-302X
    DOI 10.3389/fmicb.2022.1007988
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Calophoma clematidina

    Spetik, Milan / Špetík, Milan / Eichmeier, Ales / Burgova, Jana / Groenewald, J Z / Crous, Pedro W

    Plant disease

    2022  

    Abstract: ... ...

    Abstract Clematis
    Language English
    Publishing date 2022-11-16
    Publishing country United States
    Document type Journal Article
    ZDB-ID 754182-x
    ISSN 0191-2917
    ISSN 0191-2917
    DOI 10.1094/PDIS-09-22-2142-PDN
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Fungal trunk diseases causing decline of apricot and plum trees in the Czech Republic.

    Spetik, Milan / Pecenka, Jakub / Stuskova, Katerina / Stepanova, Bara / Eichmeier, Ales / Kiss, Tomas

    Plant disease

    2023  

    Abstract: Fungal trunk diseases (FTDs) have been a significant threat to the global stone fruit industry. FTDs are caused by a consortium of wood-decaying fungi. These fungi colonize woody tissues, causing cankers, dieback, and other decline-related symptoms in ... ...

    Abstract Fungal trunk diseases (FTDs) have been a significant threat to the global stone fruit industry. FTDs are caused by a consortium of wood-decaying fungi. These fungi colonize woody tissues, causing cankers, dieback, and other decline-related symptoms in host plants. In this study, a detailed screening of the fungal microbiota associated with the decline of stone fruit trees in the Czech Republic was performed. The wood fragments of plum and apricot trees showing symptoms of FTDs were subjected to fungal isolation. The partial internal transcribed spacer (ITS) region, partial beta-tubulin (
    Language English
    Publishing date 2023-12-12
    Publishing country United States
    Document type Journal Article
    ZDB-ID 754182-x
    ISSN 0191-2917
    ISSN 0191-2917
    DOI 10.1094/PDIS-06-23-1080-SR
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Two new species of Trichocomaceae (Eurotiales), accommodated in Rasamsonia and Talaromyces section Bacillispori, from the Czech Republic.

    Špetík, Milan / Eichmeier, Aleš / Burgová, Jana / Houbraken, Jos

    Scientific reports

    2023  Volume 13, Issue 1, Page(s) 14903

    Abstract: During a previous study on microfungi associated with clematis roots, Penicillium-like fungi were isolated and identified based on morphology. In this study, we subjected those strains to a detailed examination which led to the proposal of two taxonomic ... ...

    Abstract During a previous study on microfungi associated with clematis roots, Penicillium-like fungi were isolated and identified based on morphology. In this study, we subjected those strains to a detailed examination which led to the proposal of two taxonomic novelties, named Rasamsonia chlamydospora and Talaromyces clematidis. The first taxon is characterized by rough-walled mycelium, acerose to flask shaped phialides, cylindrical conidia and by production of chlamydospore-like structures. The four-loci-based phylogeny analysis delineated the taxon as a taxonomic novelty in Rasamsonia. Talaromyces clematidis is characterized by restricted growth on Czapek yeast extract agar, dichloran 18% glycerol agar and yeast extract sucrose agar, and production of yellow ascomata on oatmeal agar. Phylogenetic analyses placed this taxon as a taxonomic novelty in Talaromyces sect. Bacillispori. Both taxa are introduced here with detailed descriptions, photoplates and information on their phylogenetic relationship with related species.
    MeSH term(s) Eurotiales ; Talaromyces/genetics ; Czech Republic ; Agar ; Phylogeny
    Chemical Substances Agar (9002-18-0)
    Language English
    Publishing date 2023-09-09
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-023-42002-7
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Complete genome sequence of Xanthomonas phage M29, a new member of Foxunavirus isolated in the Czech Republic.

    Neoralová, Mária / Brázdová, Sára / Eichmeier, Aleš / Petrzik, Karel

    Virus genes

    2023  Volume 59, Issue 6, Page(s) 874–877

    Abstract: The newly discovered Xanthomonas phage M29 (Xp M29) is the first lytic phage infecting Xanthomonas campestris pv. campestris (Xcc) that was isolated from cabbage leaves in the Czech Republic. The phage consists of icosahedral head approximately 60 nm in ... ...

    Abstract The newly discovered Xanthomonas phage M29 (Xp M29) is the first lytic phage infecting Xanthomonas campestris pv. campestris (Xcc) that was isolated from cabbage leaves in the Czech Republic. The phage consists of icosahedral head approximately 60 nm in diameter and a probably contractile tail of 170 nm. The complete genome size was 42 891 bp, with a G + C content of 59.6%, and 69 ORFs were predicted on both strands. Pairwise nucleotide comparison showed the highest similarity with the recently described Xanthomonas phage FoX3 (91.2%). Bacteriophage Xp M29 has a narrow host range infecting 5 out of 21 isolates of Xcc. Xp M29 is a novel species in a newly formed genus Foxunavirus assigned directly to the class Caudoviricetes.
    MeSH term(s) Czech Republic ; Xanthomonas campestris/genetics ; Xanthomonas/genetics ; Bacteriophages/genetics ; Myoviridae
    Language English
    Publishing date 2023-09-04
    Publishing country United States
    Document type Journal Article
    ZDB-ID 639496-6
    ISSN 1572-994X ; 0920-8569
    ISSN (online) 1572-994X
    ISSN 0920-8569
    DOI 10.1007/s11262-023-02027-6
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Effects of Global Warming on Grapevine Berries Phenolic Compounds—A Review

    Eleonora Cataldo / Aleš Eichmeier / Giovan Battista Mattii

    Agronomy, Vol 13, Iss 2192, p

    2023  Volume 2192

    Abstract: The steadfast propensity to global warming has had a severe impact on overall viticulture. Given the observed increase in growing season temperatures in Europe (+1.7 °C from 1950 to 2004), between 2000 and 2049, it is assumed that temperatures for major ... ...

    Abstract The steadfast propensity to global warming has had a severe impact on overall viticulture. Given the observed increase in growing season temperatures in Europe (+1.7 °C from 1950 to 2004), between 2000 and 2049, it is assumed that temperatures for major wine regions will increase on average by about +0.42 °C per decade and will generally increase by +2.04 °C. Phenolic compound development is affected by environmental parameters such as ultraviolet (UV) radiation, sunlight, maximum and minimum temperatures, and grapevine water status. Proanthocyanidins, flavan-3-ol monomers, and other pigmented polymers are impacted by soil management and canopy handling strategies, as well as obtaining a microclimate around the developing bunch. This review, after a necessary summary of the synthesis of phenolic compounds in the berry (flavonoids and non-flavonoids) to let the lector delve into the topic, describes the impact of climate change and therefore of environmental factors on their accumulation and storage throughout ripening and harvesting. For example, high berry temperatures can reduce the total concentrations of skin anthocyanin; a 35 °C temperature entirely obstructed anthocyanin synthesis, and instead quercetin 3-glucoside could be enhanced with exposure to solar radiation. In addition, increments via water deficit in the relative abundance of methoxylated anthocyanins were also found. The vineyard management strategies to mitigate the degradation of phenolic compounds and preserve their concentration are also further discussed. Finally, it is believed that it is necessary today to establish an elastic and variable approach towards the single wine year, moving away from the concept of product standardization.
    Keywords climate change ; biosynthesis ; grapevine ( Vitis vinifera L.) ; water deficit ; high temperature ; zeolite ; Agriculture ; S
    Subject code 333
    Language English
    Publishing date 2023-08-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article: Conserved MicroRNAs in Human Nasopharynx Tissue Samples from Swabs Are Differentially Expressed in Response to SARS-CoV-2

    Eichmeier, Ales / Kiss, Tomas / Kocanova, Maria / Hakalova, Eliska / Spetik, Milan / Cechova, Jana / Tichy, Boris

    Genes. 2022 Feb. 14, v. 13, no. 2

    2022  

    Abstract: The use of high-throughput small RNA sequencing is well established as a technique to unveil the miRNAs in various tissues. The miRNA profiles are different between infected and non-infected tissues. We compare the SARS-CoV-2 positive and SARS-CoV-2 ... ...

    Abstract The use of high-throughput small RNA sequencing is well established as a technique to unveil the miRNAs in various tissues. The miRNA profiles are different between infected and non-infected tissues. We compare the SARS-CoV-2 positive and SARS-CoV-2 negative RNA samples extracted from human nasopharynx tissue samples to show different miRNA profiles. We explored differentially expressed miRNAs in response to SARS-CoV-2 in the RNA extracted from nasopharynx tissues of 10 SARS-CoV-2-positive and 10 SARS-CoV-2-negative patients. miRNAs were identified by small RNA sequencing, and the expression levels of selected miRNAs were validated by real-time RT-PCR. We identified 943 conserved miRNAs, likely generated through posttranscriptional modifications. The identified miRNAs were expressed in both RNA groups, NegS and PosS: miR-148a, miR-21, miR-34c, miR-34b, and miR-342. The most differentially expressed miRNA was miR-21, which is likely closely linked to the presence of SARS-CoV-2 in nasopharynx tissues. Our results contribute to further understanding the role of miRNAs in SARS-CoV-2 pathogenesis, which may be crucial for understanding disease symptom development in humans.
    Keywords Severe acute respiratory syndrome coronavirus 2 ; humans ; microRNA ; nasopharynx ; pathogenesis
    Language English
    Dates of publication 2022-0214
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    ZDB-ID 2527218-4
    ISSN 2073-4425
    ISSN 2073-4425
    DOI 10.3390/genes13020348
    Database NAL-Catalogue (AGRICOLA)

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  10. Article ; Online: Conserved MicroRNAs in Human Nasopharynx Tissue Samples from Swabs Are Differentially Expressed in Response to SARS-CoV-2.

    Eichmeier, Ales / Kiss, Tomas / Kocanova, Maria / Hakalova, Eliska / Spetik, Milan / Cechova, Jana / Tichy, Boris

    Genes

    2022  Volume 13, Issue 2

    Abstract: The use of high-throughput small RNA sequencing is well established as a technique to unveil the miRNAs in various tissues. The miRNA profiles are different between infected and non-infected tissues. We compare the SARS-CoV-2 positive and SARS-CoV-2 ... ...

    Abstract The use of high-throughput small RNA sequencing is well established as a technique to unveil the miRNAs in various tissues. The miRNA profiles are different between infected and non-infected tissues. We compare the SARS-CoV-2 positive and SARS-CoV-2 negative RNA samples extracted from human nasopharynx tissue samples to show different miRNA profiles. We explored differentially expressed miRNAs in response to SARS-CoV-2 in the RNA extracted from nasopharynx tissues of 10 SARS-CoV-2-positive and 10 SARS-CoV-2-negative patients. miRNAs were identified by small RNA sequencing, and the expression levels of selected miRNAs were validated by real-time RT-PCR. We identified 943 conserved miRNAs, likely generated through posttranscriptional modifications. The identified miRNAs were expressed in both RNA groups, NegS and PosS: miR-148a, miR-21, miR-34c, miR-34b, and miR-342. The most differentially expressed miRNA was miR-21, which is likely closely linked to the presence of SARS-CoV-2 in nasopharynx tissues. Our results contribute to further understanding the role of miRNAs in SARS-CoV-2 pathogenesis, which may be crucial for understanding disease symptom development in humans.
    MeSH term(s) COVID-19/pathology ; COVID-19/virology ; Down-Regulation ; High-Throughput Nucleotide Sequencing ; Humans ; MicroRNAs/chemistry ; MicroRNAs/metabolism ; Nasopharynx/metabolism ; Nasopharynx/virology ; Principal Component Analysis ; RNA, Viral/metabolism ; Real-Time Polymerase Chain Reaction ; SARS-CoV-2/genetics ; SARS-CoV-2/isolation & purification ; SARS-CoV-2/physiology ; Sequence Analysis, RNA ; Transcriptome ; Up-Regulation
    Chemical Substances MicroRNAs ; RNA, Viral
    Language English
    Publishing date 2022-02-14
    Publishing country Switzerland
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2527218-4
    ISSN 2073-4425 ; 2073-4425
    ISSN (online) 2073-4425
    ISSN 2073-4425
    DOI 10.3390/genes13020348
    Database MEDical Literature Analysis and Retrieval System OnLINE

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