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Article: Beekeepers Are Like Bees: Paul Limbach's Legacy

Thompson, Kathryn

2021 Volume 161, Issue 7, Page(s) 789

Document type	Article
ZDB-ID	820372-6
ISSN	0002-7626
Database	Current Contents Nutrition, Environment, Agriculture

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Article ; Online: Vibrio madracius sp. nov. isolated from Madracis decactis (Scleractinia) in St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil.

Moreira, Ana Paula B / Duytschaever, Gwen / Tonon, Luciane A Chimetto / Dias, Graciela M / Mesquita, Milene / Cnockaert, Margo / Francini-Filho, Ronaldo B / De Vos, Paul / Thompson, Cristiane C / Thompson, Fabiano L

Current microbiology

2014 Volume 69, Issue 4, Page(s) 405–411

Abstract: ... scleractinian Madracis decactis in the remote St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil ...

Abstract	Three novel isolates (A-354(T), A-328, and A-384) were retrieved from apparently healthy scleractinian Madracis decactis in the remote St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil. The novel isolates formed a distinct lineage based on the phylogenetic reconstruction using the 16S rRNA and pyrH gene sequences. They fell into the Mediterranei clade and their closest phylogenetic neighbour was V. mediterranei species, sharing upto 98.1 % 16S rRNA gene sequence similarity. Genomic analysis including in silico DDH, MLSA, AAI and genomic signature distinguished A-354(T) from V. mediterranei LMG 19703 (=AK1) with values of 33.3, 94.2, 92 %, and 11.3, respectively. Phenotypically, the novel isolates can be differentiated from V. mediterranei based on the four following features. They do not grow at 8 % NaCl; use D-gluconic acid but not L-galactonic acid lactone as carbon source; and do not have the fatty acid C18:0. Differentiation from both the other Mediterranei clade species (V. maritimus and V. variabilis) is supported by fifteen features. The novel species show lysine decarboxylase and tryptophan deaminase, but not gelatinase and arginine dihydrolase activity; produce acetoin; use α-D-lactose, N-acetyl-D-galactosamine, myo-Inositol, D-gluconic acid, and β-hydroxy-D,L-butyric acid; and present the fatty acids C14:0 iso, C15:0 anteiso, C16:0 iso, C17:0 anteiso, and C17:1x8c . Whole-cell protein profiles, based on MALDI-TOF, showed that the isolates are not clonal and also distinguished them from the closes phylogenetic neighbors. The name Vibrio madracius sp. nov. is proposed to encompass these novel isolates. The G+C content of the type strain A-354(T) (=LMG 28124(T)=CBAS 482(T)) is 44.5 mol%.
MeSH term(s)	Animals ; Anthozoa/microbiology ; Bacterial Typing Techniques ; Brazil ; DNA, Bacterial/genetics ; Molecular Sequence Data ; Phylogeny ; RNA, Ribosomal, 16S/genetics ; Vibrio/classification ; Vibrio/genetics ; Vibrio/isolation & purification
Chemical Substances	DNA, Bacterial ; RNA, Ribosomal, 16S
Language	English
Publishing date	2014-05-14
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	134238-1
ISSN	1432-0991 ; 0343-8651
ISSN (online)	1432-0991
ISSN	0343-8651
DOI	10.1007/s00284-014-0600-1
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article: Photobacterium sanctipauli sp. nov. isolated from bleached Madracis decactis (Scleractinia) in the St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil.

Moreira, Ana Paula B / Duytschaever, Gwen / Chimetto Tonon, Luciane A / Fróes, Adriana M / de Oliveira, Louisi S / Amado-Filho, Gilberto M / Francini-Filho, Ronaldo B / De Vos, Paul / Swings, Jean / Thompson, Cristiane C / Thompson, Fabiano L

PeerJ

2014 Volume 2, Page(s) e427

Abstract: Five novel strains of Photobacterium (A-394T, A-373, A-379, A-397 and A-398) were isolated from bleached coral Madracis decactis (scleractinian) in the remote St Peter & St Archipelago (SPSPA), Mid-Atlantic Ridge, Brazil. Healthy M. decactis specimens ... ...

Abstract	Five novel strains of Photobacterium (A-394T, A-373, A-379, A-397 and A-398) were isolated from bleached coral Madracis decactis (scleractinian) in the remote St Peter & St Archipelago (SPSPA), Mid-Atlantic Ridge, Brazil. Healthy M. decactis specimens were also surveyed, but no strains were related to them. The novel isolates formed a distinct lineage based on the 16S rRNA, recA, and rpoA gene sequences analysis. Their closest phylogenetic neighbours were Photobacterium rosenbergii, P. gaetbulicola, and P. lutimaris, sharing 96.6 to 95.8% 16S rRNA gene sequence similarity. The novel species can be differentiated from the closest neighbours by several phenotypic and chemotaxonomic markers. It grows at pH 11, produces tryptophane deaminase, presents the fatty acid C18:0, but lacks C16:0 iso. The whole cell protein profile, based in MALDI-TOF MS, distinguished the strains of the novel species among each other and from the closest neighbors. In addition, we are releasing the whole genome sequence of the type strain. The name Photobacterium sanctipauli sp. nov. is proposed for this taxon. The G + C content of the type strain A-394(T) (= LMG27910(T) = CAIM1892(T)) is 48.2 mol%.
Language	English
Publishing date	2014-06-19
Publishing country	United States
Document type	Journal Article
ZDB-ID	2703241-3
ISSN	2167-8359
ISSN	2167-8359
DOI	10.7717/peerj.427
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: Potential metabolic strategies of widely distributed holobionts in the oceanic archipelago of St Peter and St Paul (Brazil).

Rua, Cintia P J / Gregoracci, Gustavo B / Santos, Eidy O / Soares, Ana Carolina / Francini-Filho, Ronaldo B / Thompson, Fabiano

FEMS microbiology ecology

2015 Volume 91, Issue 6

Abstract: ... collected in the oceanic archipelago of St Peter and St Paul and analysed through metagenomics. Sequences ...

Abstract	Sponges are one of the most complex symbiotic communities and while the taxonomic composition of associated microbes has been determined, the biggest challenge now is to uncover their functional role in symbiosis. We investigated the microbiota of two widely distributed sponge species, regarding both their taxonomic composition and their functional roles. Samples of Didiscus oxeata and Scopalina ruetzleri were collected in the oceanic archipelago of St Peter and St Paul and analysed through metagenomics. Sequences generated by 454 pyrosequencing and Ion Torrent were taxonomically and functionally annotated on the MG-RAST server using the GenBank and SEED databases, respectively. Both communities exhibit equivalence in core functions, interestingly played by the most abundant taxa in each community. Conversely, the microbial communities differ in composition, taxonomic diversity and potential metabolic strategies. Functional annotation indirectly suggests differences in preferential pathways of carbon, nitrogen and sulphur metabolisms, which may indicate different metabolic strategies.
MeSH term(s)	Animals ; Bacteriophages/genetics ; Bacteriophages/isolation & purification ; Base Sequence ; Brazil ; Carbon/metabolism ; Hydrocarbons, Aromatic/metabolism ; Metagenomics ; Microbiota/genetics ; Nitrogen/metabolism ; Phylogeny ; Porifera/microbiology ; Principal Component Analysis ; Sequence Analysis, DNA ; Sulfur/metabolism ; Symbiosis/physiology
Chemical Substances	Hydrocarbons, Aromatic ; Sulfur (70FD1KFU70) ; Carbon (7440-44-0) ; Nitrogen (N762921K75)
Language	English
Publishing date	2015-06
Publishing country	England
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	283722-5
ISSN	1574-6941 ; 0168-6496
ISSN (online)	1574-6941
ISSN	0168-6496
DOI	10.1093/femsec/fiv043
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: Photobacterium sanctipauli sp. nov. isolated from bleached Madracis decactis (Scleractinia) in the St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil

Ana Paula B. Moreira / Gwen Duytschaever / Luciane A. Chimetto Tonon / Adriana M. Fróes / Louisi S. de Oliveira / Gilberto M. Amado-Filho / Ronaldo B. Francini-Filho / Paul De Vos / Jean Swings / Cristiane C. Thompson / Fabiano L. Thompson

PeerJ, Vol 2, p e

2014 Volume 427

Abstract	Five novel strains of Photobacterium (A-394T, A-373, A-379, A-397 and A-398) were isolated from bleached coral Madracis decactis (scleractinian) in the remote St Peter & St Archipelago (SPSPA), Mid-Atlantic Ridge, Brazil. Healthy M. decactis specimens were also surveyed, but no strains were related to them. The novel isolates formed a distinct lineage based on the 16S rRNA, recA, and rpoA gene sequences analysis. Their closest phylogenetic neighbours were Photobacterium rosenbergii, P. gaetbulicola, and P. lutimaris, sharing 96.6 to 95.8% 16S rRNA gene sequence similarity. The novel species can be differentiated from the closest neighbours by several phenotypic and chemotaxonomic markers. It grows at pH 11, produces tryptophane deaminase, presents the fatty acid C18:0, but lacks C16:0 iso. The whole cell protein profile, based in MALDI-TOF MS, distinguished the strains of the novel species among each other and from the closest neighbors. In addition, we are releasing the whole genome sequence of the type strain. The name Photobacterium sanctipauli sp. nov. is proposed for this taxon. The G + C content of the type strain A-394T (= LMG27910T = CAIM1892T) is 48.2 mol%.
Keywords	Photobacterium sanctipauli ; St Paul’s rocks ; Coral bleaching ; New species ; Genomic taxonomy ; Medicine ; R ; Biology (General) ; QH301-705.5
Subject code	590
Language	English
Publishing date	2014-06-01T00:00:00Z
Publisher	PeerJ Inc.
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article: Vibrio madracius sp. nov. Isolated from Madracis decactis (Scleractinia) in St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil

Moreira, Ana Paula B / Duytschaever, Gwen / Tonon, Luciane A. Chimetto / Dias, Graciela M / Mesquita, Milene / Cnockaert, Margo / Francini-Filho, Ronaldo B / De Vos, Paul / Thompson, Cristiane C / Thompson, Fabiano L

Current microbiology. 2014 Oct., v. 69, no. 4

2014

Abstract: ... scleractinian Madracis decactis in the remote St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil ...

Abstract	Three novel isolates (A-354ᵀ, A-328, and A-384) were retrieved from apparently healthy scleractinian Madracis decactis in the remote St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil. The novel isolates formed a distinct lineage based on the phylogenetic reconstruction using the 16S rRNA and pyrH gene sequences. They fell into the Mediterranei clade and their closest phylogenetic neighbour was V.� mediterranei species, sharing upto 98.1� % 16S rRNA gene sequence similarity. Genomic analysis including in silico DDH, MLSA, AAI and genomic signature distinguished A-354ᵀ from V.� mediterranei LMG 19703 (=AK1) with values of 33.3, 94.2, 92� %, and 11.3, respectively. Phenotypically, the novel isolates can be differentiated from V.� mediterranei based on the four following features. They do not grow at 8� % NaCl; use D-gluconic acid but not L-galactonic acid lactone as carbon source; and do not have the fatty acid C₁₈:₀. Differentiation from both the other Mediterranei clade species (V.� maritimus and V.� variabilis) is supported by fifteen features. The novel species show lysine decarboxylase and tryptophan deaminase, but not gelatinase and arginine dihydrolase activity; produce acetoin; use α-D-lactose, N-acetyl-D-galactosamine, myo-Inositol, D-gluconic acid, and β-hydroxy-D,L-butyric acid; and present the fatty acids C₁₄:₀ iso, C₁₅:₀ anteiso, C₁₆:₀ iso, C₁₇:₀ anteiso, and C₁₇:₁ₓ₈c . Whole-cell protein profiles, based on MALDI-TOF, showed that the isolates are not clonal and also distinguished them from the closes phylogenetic neighbors. The name Vibrio madracius sp. nov. is proposed to encompass these novel isolates. The G+C content of the type strain A-354ᵀ (=LMG 28124ᵀ=CBAS 482ᵀ) is 44.5� mol%.
Keywords	Vibrio ; acetoin ; arginine deiminase ; carbon ; fatty acids ; genomics ; lysine decarboxylase ; myo-inositol ; nucleotide sequences ; phylogeny ; ribosomal RNA ; sequence homology ; sodium chloride ; tryptophan ; Brazil
Language	English
Dates of publication	2014-10
Size	p. 405-411.
Publishing place	Springer-Verlag
Document type	Article
ZDB-ID	134238-1
ISSN	1432-0991 ; 0343-8651
ISSN (online)	1432-0991
ISSN	0343-8651
DOI	10.1007/s00284-014-0600-1
Database	NAL-Catalogue (AGRICOLA)

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Article: Turbulence-driven shifts in holobionts and planktonic microbial assemblages in St. Peter and St. Paul Archipelago, Mid-Atlantic Ridge, Brazil.

Moreira, Ana Paula B / Meirelles, Pedro M / Santos, Eidy de O / Amado-Filho, Gilberto M / Francini-Filho, Ronaldo B / Thompson, Cristiane C / Thompson, Fabiano L

Frontiers in microbiology

2015 Volume 6, Page(s) 1038

Abstract: ... tropical island, St Peter and St Paul Archipelago (SPSPA, Brazil). Twenty one metagenomes were obtained ...

Abstract	The aim of this study was to investigate the planktonic and the holobiont Madracis decactis (Scleractinia) microbial diversity along a turbulence-driven upwelling event, in the world's most isolated tropical island, St Peter and St Paul Archipelago (SPSPA, Brazil). Twenty one metagenomes were obtained for seawater (N = 12), healthy and bleached holobionts (N = 9) before, during and after the episode of high seawater turbulence and upwelling. Microbial assemblages differed between low turbulence-low nutrient (LLR) and high-turbulence-high nutrient (HHR) regimes in seawater. During LLR there was a balance between autotrophy and heterotrophy in the bacterioplankton and the ratio cyanobacteria:heterotrophs ~1 (C:H). Prochlorales, unclassified Alphaproteobacteria and Euryarchaeota were the dominant bacteria and archaea, respectively. Basic metabolisms and cyanobacterial phages characterized the LLR. During HHR C:H < < 0.05 and Gammaproteobacteria approximated 50% of the most abundant organisms in seawater. Alteromonadales, Oceanospirillales, and Thaumarchaeota were the dominant bacteria and archaea. Prevailing metabolisms were related to membrane transport, virulence, disease, and defense. Phages targeting heterotrophs and virulence factor genes characterized HHR. Shifts were also observed in coral microbiomes, according to both annotation-indepent and -dependent methods. HHR bleached corals metagenomes were the most dissimilar and could be distinguished by their di- and tetranucleotides frequencies, Iron Acquision metabolism and virulence genes, such as V. cholerae-related virulence factors. The healthy coral holobiont was shown to be less sensitive to transient seawater-related perturbations than the diseased animals. A conceptual model for the turbulence-induced shifts is put forward.
Language	English
Publishing date	2015-10-02
Publishing country	Switzerland
Document type	Journal Article
ZDB-ID	2587354-4
ISSN	1664-302X
ISSN	1664-302X
DOI	10.3389/fmicb.2015.01038
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Book: Paul H. Nitze on the future

Nitze, Paul H / Rearden, Steven L / Thompson, Kenneth W

(W. Alton Jones Foundation series on arms control ; 18)

1991

Title variant	Sammlung
Author's details	ed. by Kenneth W. Thompson and Steven L. Rearden
Series title	W. Alton Jones Foundation series on arms control ; 18
Keywords	World politics ; United States
Language	Undetermined
Size	vii, 278 p, 24 cm
Publisher	University Press of America
Publishing place	Lanham, Md
Document type	Book
ISBN	0819184543 ; 0819184551 ; 9780819184542 ; 9780819184559
Database	Former special subject collection: coastal and deep sea fishing

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Book ; Online ; E-Book: Evaluating What Works

Bishop, Dorothy V. M. / Thompson, Paul

An Intuitive Guide to Intervention Research for Practitioners

2024

Abstract: Those who work in allied health professions and education aim to make people's lives better. Often, however, it is hard to know how effective this work has been: would change have occurred if there was no intervention? Is it possible we are doing more ... ...

Author's details	Dorothy V. M. Bishop and Paul Thompson
Abstract	Those who work in allied health professions and education aim to make people's lives better. Often, however, it is hard to know how effective this work has been: would change have occurred if there was no intervention? Is it possible we are doing more harm than good? To answer these questions and develop a body of knowledge about what works, we need to evaluate interventions. Objective intervention research is vital to improve outcomes, but this is a complex area, where it is all too easy to misinterpret evidence. This book uses practical examples to increase awareness of the numerous sources of bias that can lead to mistaken conclusions when evaluating interventions. The focus is on quantitative research methods, and exploration of the reasons why those both receiving and implementing intervention behave in the ways they do. Evaluating What Works: Intuitive Guide to Intervention Research for Practitioners illustrates how different research designs can overcome these issues, and points the reader to sources with more in-depth information. This book is intended for those with little or no background in statistics, to give them the confidence to approach statistics in published literature with a more critical eye, recognise when more specialist advice is needed, and give them the ability to communicate more effectively with statisticians. Key Features: Strong focus on quantitative research methods Complements more technical introductions to statistics Provides a good explanation of how quantitative studies are designed, and what biases and pitfalls they can involve.
Keywords	Motivational interviewing
Subject code	780
Language	English
Size	1 online resource (235 pages)
Edition	First edition.
Publisher	CRC Press
Publishing place	Boca Raton, FL
Document type	Book ; Online ; E-Book
Remark	Zugriff für angemeldete ZB MED-Nutzerinnen und -Nutzer
ISBN	1-003-45307-4 ; 1-003-83011-0 ; 9781032590615 ; 978-1-003-45307-9 ; 978-1-003-83011-5 ; 1032590610
DOI	10.1201/9781003453079
Database	ZB MED Catalogue: Medicine, Health, Nutrition, Environment, Agriculture

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Book ; Online ; E-Book: Food and agricultural biotechnology in ethical perspective

Thompson, Paul B.

(The international library of environmental, agricultural and food ethics ; volume 32)

2020

Author's details	Paul B. Thompson
Series title	The international library of environmental, agricultural and food ethics ; volume 32
Collection
Keywords	Ethics ; Agriculture
Subject code	630.01
Language	English
Size	1 Online-Ressource (XXXI, 404 Seiten
Edition	third edition
Publisher	Springer International Publishing
Publishing place	Cham
Publishing country	Switzerland
Document type	Book ; Online ; E-Book
Note	1. und 2. Auflage unter dem Titel: Food Biotechnology in Ethical Perspective erschienen
Remark	Zugriff für angemeldete ZB MED-Nutzerinnen und -Nutzer
HBZ-ID	HT020710545
ISBN	978-3-030-61214-6 ; 9783030612139 ; 9783030612153 ; 9783030612160 ; 3-030-61214-7 ; 3030612139 ; 3030612155 ; 3030612163
Database	ZB MED Catalogue: Medicine, Health, Nutrition, Environment, Agriculture

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