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  1. Article: Differential regulation of V(D)J recombination during development of avian B and T cells.

    Pickel, J M / McCormack, W T / Chen, C H / Cooper, M D / Thompson, C B

    International immunology

    1993  Volume 5, Issue 8, Page(s) 919–927

    Abstract: The lymphoid immune system is comprised of two major cell types, B cells and T cells, originally ... require a period of development in the bursa of Fabricius while T cells undergo development in the thymus ... of individual members of variable (V), diversity (D), and joining (J) gene segment families during embryonic ...

    Abstract The lymphoid immune system is comprised of two major cell types, B cells and T cells, originally identified in avian species. Although both lineages arise from hematopoietic stem cells, avian B cells require a period of development in the bursa of Fabricius while T cells undergo development in the thymus. Each cell type expresses a lineage-specific antigen receptor encoded by genes created by the rearrangement of individual members of variable (V), diversity (D), and joining (J) gene segment families during embryonic development. In this report, we demonstrate that productive rearrangement of the TCR beta gene occurs exclusively in the thymus during normal development. TCR beta rearrangements involving gene segments from the V beta 1 gene family can be detected beginning on day 12 of development, while rearrangements involving the other family of V beta gene segments, V beta 2, were first detected on day 14 of embryogenesis. In contrast, productive rearrangements of Ig light (IgL) and heavy (IgH) chain genes were not restricted to the bursa of Fabricius. Instead, VH-DJH heavy chain rearrangements and VL-JL light chain rearrangements were detected primarily in the embryonic spleen, beginning as early as embryonic day 10, even in birds bursectomized at 60 h of development. Within the spleen, Ig rearrangement was confined to the subset of cells that express the chB6 surface protein. Unlike bursal lymphocytes, which express the recombinase activating gene (RAG)-2 but not RAG-1, splenic B cell precursors also express RAG-1. The data indicate that, while B cell precursors initiate recombination prior to migration of the bursa of Fabricius, T cell precursors undergo V(D)J recombination following migration to the thymus. Thus, distinct developmental mechanisms appear to regulate the process of receptor rearrangement during avian B and T cell development.
    MeSH term(s) Animals ; B-Lymphocytes/immunology ; Base Sequence ; Chick Embryo ; Gene Rearrangement ; Genes, Immunoglobulin ; Homeodomain Proteins ; Immunoglobulin Joining Region/genetics ; Immunoglobulin Light Chains/genetics ; Immunoglobulin Variable Region/genetics ; Molecular Sequence Data ; Proteins/genetics ; RNA, Messenger/analysis ; Receptors, Antigen, T-Cell/genetics ; Recombination, Genetic ; T-Lymphocytes/immunology
    Chemical Substances Homeodomain Proteins ; Immunoglobulin Joining Region ; Immunoglobulin Light Chains ; Immunoglobulin Variable Region ; Proteins ; RNA, Messenger ; Receptors, Antigen, T-Cell ; RAG-1 protein (128559-51-3)
    Language English
    Publishing date 1993-08
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, P.H.S.
    ZDB-ID 1013745-2
    ISSN 1460-2377 ; 0953-8178
    ISSN (online) 1460-2377
    ISSN 0953-8178
    DOI 10.1093/intimm/5.8.919
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Milk as a Conveyer of Disease.

    Cooper, T J

    The Journal of comparative medicine and veterinary archives

    2022  Volume 23, Issue 12, Page(s) 762–764

    Language English
    Publishing date 2022-10-24
    Publishing country United States
    Document type Journal Article
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Comparative analysis of

    Hague, Michael T J / Wheeler, Timothy B / Cooper, Brandon S

    bioRxiv : the preprint server for biology

    2024  

    Abstract: Many insects and other animals carry microbial endosymbionts that influence their reproduction and fitness. These relationships only persist if endosymbionts are reliably transmitted from one host generation to the next. ...

    Abstract Many insects and other animals carry microbial endosymbionts that influence their reproduction and fitness. These relationships only persist if endosymbionts are reliably transmitted from one host generation to the next.
    Language English
    Publishing date 2024-03-06
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2024.03.03.583170
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Investigating microstructure evolution in block copolymer membranes.

    Cooper, Anthony J / Grzetic, Douglas J / Delaney, Kris T / Fredrickson, Glenn H

    The Journal of chemical physics

    2024  Volume 160, Issue 7

    Abstract: Block copolymer self-assembly in conjunction with nonsolvent-induced phase separation (SNIPS) has been increasingly leveraged to fabricate integral-asymmetric membranes. The large number of formulation and processing parameters associated with SNIPS, ... ...

    Abstract Block copolymer self-assembly in conjunction with nonsolvent-induced phase separation (SNIPS) has been increasingly leveraged to fabricate integral-asymmetric membranes. The large number of formulation and processing parameters associated with SNIPS, however, has prevented the reliable construction of high performance membranes. In this study, we apply dynamical self-consistent field theory to model the SNIPS process and investigate the effect of various parameters on the membrane morphology: solvent selectivity, nonsolvent selectivity, initial film composition, and glass transition composition. We examine how solvent selectivity and concentration of polymers in the film impact the structure of micelles that connect to form the membrane matrix. In particular, we find that preserving the order in the surface layer and forming a connection between the supporting and surface layer are nontrivial and sensitive to each parameter studied. The effect of each parameter is discussed, and suggestions are made for successfully fabricating viable block copolymer membranes.
    Language English
    Publishing date 2024-02-21
    Publishing country United States
    Document type Journal Article
    ZDB-ID 3113-6
    ISSN 1089-7690 ; 0021-9606
    ISSN (online) 1089-7690
    ISSN 0021-9606
    DOI 10.1063/5.0188196
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: High-Throughput Deconvolution of Native Protein Mass Spectrometry Imaging Data Sets for Mass Domain Analysis.

    Hale, Oliver J / Cooper, Helen J / Marty, Michael T

    Analytical chemistry

    2023  Volume 95, Issue 37, Page(s) 14009–14015

    Abstract: Protein mass spectrometry imaging (MSI) with electrospray-based ambient ionization techniques, such as nanospray desorption electrospray ionization (nano-DESI), generates data sets in which each pixel corresponds to a mass spectrum populated by peaks ... ...

    Abstract Protein mass spectrometry imaging (MSI) with electrospray-based ambient ionization techniques, such as nanospray desorption electrospray ionization (nano-DESI), generates data sets in which each pixel corresponds to a mass spectrum populated by peaks corresponding to multiply charged protein ions. Importantly, the signal associated with each protein is split among multiple charge states. These peaks can be transformed into the mass domain by spectral deconvolution. When proteins are imaged under native/non-denaturing conditions to retain non-covalent interactions, deconvolution is particularly valuable in helping interpret the data. To improve the acquisition speed, signal-to-noise ratio, and sensitivity, native MSI is usually performed using mass resolving powers that do not provide isotopic resolution, and conventional algorithms for deconvolution of lower-resolution data are not suitable for these large data sets. UniDec was originally developed to enable rapid deconvolution of complex protein mass spectra. Here, we developed an updated feature set harnessing the high-throughput module, MetaUniDec, to deconvolve each pixel of native MSI data sets and transform
    MeSH term(s) Algorithms ; Diagnostic Imaging ; Electrophoresis, Polyacrylamide Gel ; Mass Spectrometry ; Signal-To-Noise Ratio
    Language English
    Publishing date 2023-09-06
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 1508-8
    ISSN 1520-6882 ; 0003-2700
    ISSN (online) 1520-6882
    ISSN 0003-2700
    DOI 10.1021/acs.analchem.3c02616
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Challenges to Electroconvulsive Therapy in Pediatric Catatonia: A Case Report.

    Hua, Tammy / Cooper, Joseph J

    The journal of ECT

    2023  Volume 39, Issue 3, Page(s) e6–e8

    MeSH term(s) Humans ; Child ; Catatonia/complications ; Catatonia/therapy ; Electroconvulsive Therapy
    Language English
    Publishing date 2023-04-24
    Publishing country United States
    Document type Case Reports ; Letter
    ZDB-ID 1426385-3
    ISSN 1533-4112 ; 1095-0680
    ISSN (online) 1533-4112
    ISSN 1095-0680
    DOI 10.1097/YCT.0000000000000920
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  7. Article: Metabolic Heterogeneity, Plasticity, and Adaptation to "Glutamine Addiction" in Cancer Cells: The Role of Glutaminase and the GTωA [Glutamine Transaminase-ω-Amidase (Glutaminase II)] Pathway.

    Cooper, Arthur J L / Dorai, Thambi / Pinto, John T / Denton, Travis T

    Biology

    2023  Volume 12, Issue 8

    Abstract: Many cancers utilize l-glutamine as a major energy source. Often cited in the literature as "l-glutamine addiction", this well-characterized pathway involves hydrolysis of l-glutamine by a glutaminase to l-glutamate, followed by oxidative deamination, or ...

    Abstract Many cancers utilize l-glutamine as a major energy source. Often cited in the literature as "l-glutamine addiction", this well-characterized pathway involves hydrolysis of l-glutamine by a glutaminase to l-glutamate, followed by oxidative deamination, or transamination, to α-ketoglutarate, which enters the tricarboxylic acid cycle. However, mammalian tissues/cancers possess a rarely mentioned, alternative pathway (the glutaminase II pathway): l-glutamine is transaminated to α-ketoglutaramate (KGM), followed by ω-amidase (ωA)-catalyzed hydrolysis of KGM to α-ketoglutarate. The name glutaminase II may be confused with the glutaminase 2 (GLS2) isozyme. Thus, we recently renamed the glutaminase II pathway the "glutamine transaminase-ω-amidase (GTωA)" pathway. Herein, we summarize the metabolic importance of the GTωA pathway, including its role in closing the methionine salvage pathway, and as a source of anaplerotic α-ketoglutarate. An advantage of the GTωA pathway is that there is no net change in redox status, permitting α-ketoglutarate production during hypoxia, diminishing cellular energy demands. We suggest that the ability to coordinate control of both pathways bestows a metabolic advantage to cancer cells. Finally, we discuss possible benefits of GTωA pathway inhibitors, not only as aids to studying the normal biological roles of the pathway but also as possible useful anticancer agents.
    Language English
    Publishing date 2023-08-14
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2661517-4
    ISSN 2079-7737
    ISSN 2079-7737
    DOI 10.3390/biology12081131
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  8. Article ; Online: Honouring the life and legacy of professor Lennart Levi, the father of stress medicine.

    Theorell, Töres / Siegrist, Johannes / Cooper, Cary L

    Stress and health : journal of the International Society for the Investigation of Stress

    2024  , Page(s) e3396

    Language English
    Publishing date 2024-03-23
    Publishing country England
    Document type Editorial
    ZDB-ID 2042041-9
    ISSN 1532-2998 ; 1532-3005
    ISSN (online) 1532-2998
    ISSN 1532-3005
    DOI 10.1002/smi.3396
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  9. Article: α-Ketoglutaramate-A key metabolite contributing to glutamine addiction in cancer cells.

    Cooper, Arthur J L / Dorai, Thambi / Pinto, John T / Denton, Travis T

    Frontiers in medicine

    2022  Volume 13, Page(s) 1035335

    Language English
    Publishing date 2022-11-04
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2775999-4
    ISSN 2296-858X
    ISSN 2296-858X
    DOI 10.3389/fmed.2022.1035335
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  10. Article ; Online: Do athletic ECG changes predict athletic performance in Gurkha recruits?

    Paton, Michael / Wong, A K H / Cooper, D / Pun, D / Melhuish, J / Parsons, I T

    BMJ military health

    2024  

    Abstract: Introduction: ECG changes are associated with regular long-term intensive exercise due to electrical manifestations of increased vagal tone, increased ventricular wall thickness and enlarged chamber size. The aim of this study was to further understand ... ...

    Abstract Introduction: ECG changes are associated with regular long-term intensive exercise due to electrical manifestations of increased vagal tone, increased ventricular wall thickness and enlarged chamber size. The aim of this study was to further understand the relationship of athletic ECG changes and athletic performance in an athletic population.
    Methods: A retrospective cohort study was performed in 195 Nepali civilian males undergoing selection to the Gurkhas. V̇O
    Results: The median number of athletic changes on ECG was 2 (IQR 1-2). There was no significant correlation (p=0.46) between the number of ECG adaptations and the degree of cardiovascular fitness by estimated V̇O
    Conclusion: ECG changes of athleticism negligibly predict and differentiate athletic performance in our athletic population. The most predictive ECG markers being voltage criteria for left ventricular hypertrophy and RVH. Markers of increased vagal tone were not predictive. TWI, being a marker for disease, was also a marker for athletic performance in this cohort. The number of athletic ECG adaptations did not predict increased athletic performance.
    Language English
    Publishing date 2024-04-30
    Publishing country England
    Document type Journal Article
    ZDB-ID 3011686-7
    ISSN 2633-3775 ; 2633-3767
    ISSN (online) 2633-3775
    ISSN 2633-3767
    DOI 10.1136/military-2023-002576
    Database MEDical Literature Analysis and Retrieval System OnLINE

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