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Article ; Online: High monocytic MDSC signature predicts multi-drug resistance and cancer relapse in non-Hodgkin lymphoma patients treated with R-CHOP.

Dhar, Sukanya / Chakravarti, Mohona / Ganguly, Nilanjan / Saha, Akata / Dasgupta, Shayani / Bera, Saurav / Sarkar, Anirban / Roy, Kamalika / Das, Juhina / Bhuniya, Avishek / Ghosh, Sarbari / Sarkar, Madhurima / Hajra, Srabanti / Banerjee, Saptak / Pal, Chiranjib / Saha, Bhaskar / Mukherjee, Kalyan Kusum / Baral, Rathindranath / Bose, Anamika

Frontiers in immunology

2024 Volume 14, Page(s) 1303959

Abstract: ... prednisone (R-CHOP) is the standard treatment regimen for NHL, yielding a complete remission (CR) rate of 40 ...

Abstract	Introduction: Non-Hodgkin Lymphoma (NHL) is a heterogeneous lymphoproliferative malignancy with B cell origin. Combinatorial treatment of rituximab, cyclophsphamide, hydroxydaunorubicin, oncovin, prednisone (R-CHOP) is the standard treatment regimen for NHL, yielding a complete remission (CR) rate of 40-50%. Unfortunately, considerable patients undergo relapse after CR or initial treatment, resulting in poor clinical implications. Patient's response to chemotherapy varies widely from static disease to cancer recurrence and later is primarily associated with the development of multi-drug resistance (MDR). The immunosuppressive cells within the tumor microenvironment (TME) have become a crucial target for improving the therapy efficacy. However, a better understanding of their involvement is needed for distinctive response of NHL patients after receiving chemotherapy to design more effective front-line treatment algorithms based on reliable predictive biomarkers. Methods: Peripheral blood from 61 CD20 Results: We observed a strong positive correlation between elevated level of CD33 Conclusion: Our data suggests that screening patients for high titre of M-MDSCs might be considered as a new potential biomarker and treatment modality in overcoming chemo-resistance in NHL patients.
MeSH term(s)	Humans ; Animals ; Mice ; Myeloid-Derived Suppressor Cells/metabolism ; Rituximab/pharmacology ; Rituximab/therapeutic use ; Rituximab/metabolism ; Vincristine/pharmacology ; Vincristine/therapeutic use ; Interleukin-10/metabolism ; Prednisone/pharmacology ; Prednisone/therapeutic use ; Interleukin-6/metabolism ; Neoplasm Recurrence, Local/metabolism ; Lymphoma, Non-Hodgkin/drug therapy ; Lymphoma, Non-Hodgkin/metabolism ; Cyclophosphamide/pharmacology ; Cyclophosphamide/therapeutic use ; Doxorubicin/pharmacology ; Doxorubicin/therapeutic use ; Doxorubicin/metabolism ; Lymphoma/metabolism ; Biomarkers/metabolism ; Drug Resistance, Multiple ; Tumor Microenvironment/physiology
Chemical Substances	Rituximab (4F4X42SYQ6) ; Vincristine (5J49Q6B70F) ; Interleukin-10 (130068-27-8) ; Prednisone (VB0R961HZT) ; Interleukin-6 ; Cyclophosphamide (8N3DW7272P) ; Doxorubicin (80168379AG) ; Biomarkers
Language	English
Publishing date	2024-01-18
Publishing country	Switzerland
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2606827-8
ISSN	1664-3224 ; 1664-3224
ISSN (online)	1664-3224
ISSN	1664-3224
DOI	10.3389/fimmu.2023.1303959
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Article ; Online: Human antigen R transfers miRNA to Syntaxin 5 to synergize miRNA export from activated macrophages.

Hom Choudhury, Sourav / Bhattacharjee, Shreya / Mukherjee, Kamalika / Bhattacharyya, Suvendra N

The Journal of biological chemistry

2024 Volume 300, Issue 4, Page(s) 107170

Abstract: ... Human antigen R. This activity ensures the export of miRNAs and allows the expression of miRNA-repressed ...

Abstract	Intercellular miRNA exchange acts as a key mechanism to control gene expression post-transcriptionally in mammalian cells. Regulated export of repressive miRNAs allows the expression of inflammatory cytokines in activated macrophages. Intracellular trafficking of miRNAs from the endoplasmic reticulum to endosomes is a rate-determining step in the miRNA export process and plays an important role in controlling cellular miRNA levels and inflammatory processes in macrophages. We have identified the SNARE protein Syntaxin 5 (STX5) to show a synchronized expression pattern with miRNA activity loss in activated mammalian macrophage cells. STX5 is both necessary and sufficient for macrophage activation and clearance of the intracellular pathogen Leishmania donovani from infected macrophages. Exploring the mechanism of how STX5 acts as an immunostimulant, we have identified the de novo RNA-binding property of this SNARE protein that binds specific miRNAs and facilitates their accumulation in endosomes in a cooperative manner with human ELAVL1 protein, Human antigen R. This activity ensures the export of miRNAs and allows the expression of miRNA-repressed cytokines. Conversely, in its dual role in miRNA export, this SNARE protein prevents lysosomal targeting of endosomes by enhancing the fusion of miRNA-loaded endosomes with the plasma membrane to ensure accelerated release of extracellular vesicles and associated miRNAs.
MeSH term(s)	MicroRNAs/metabolism ; MicroRNAs/genetics ; Humans ; Qa-SNARE Proteins/metabolism ; Qa-SNARE Proteins/genetics ; Macrophages/metabolism ; Animals ; Mice ; Endosomes/metabolism ; Macrophage Activation ; Leishmania donovani/metabolism ; Leishmania donovani/genetics ; RNA Transport
Chemical Substances	MicroRNAs ; Qa-SNARE Proteins
Language	English
Publishing date	2024-03-15
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2997-x
ISSN	1083-351X ; 0021-9258
ISSN (online)	1083-351X
ISSN	0021-9258
DOI	10.1016/j.jbc.2024.107170
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Article ; Online: β-keto amyrin isolated from Cryptostegia grandiflora R. br. inhibits inflammation caused by Daboia russellii viper venom: Direct binding of β-keto amyrin to phospholipase A

Santhosh, K H / Krishna, V / Kemparaju, K / Manjunatha, H / Shashi Kumar, R / Mukherjee, A / Gomez Mejiba, S E / Ramirez, D C / Ravindranath, B S

Toxicon : official journal of the International Society on Toxinology

2024 Volume 241, Page(s) 107679

Abstract: The search for mechanism-based anti-inflammatory therapies is of fundamental importance to avoid undesired off-target effects. Phospholipase ... ...

Abstract	The search for mechanism-based anti-inflammatory therapies is of fundamental importance to avoid undesired off-target effects. Phospholipase A
MeSH term(s)	Animals ; Mice ; Anti-Inflammatory Agents/pharmacology ; Apocynaceae/chemistry ; Daboia ; Diclofenac/pharmacology ; Diclofenac/therapeutic use ; Inflammation/chemically induced ; Inflammation/drug therapy ; Molecular Docking Simulation ; Oleanolic Acid/analogs & derivatives ; Oleanolic Acid/pharmacology ; Oleanolic Acid/therapeutic use ; Phospholipases A2/drug effects ; Phospholipases A2/metabolism ; Viper Venoms/chemistry ; Viper Venoms/toxicity
Chemical Substances	Anti-Inflammatory Agents ; beta-amyrin (KM8353IPSO) ; Diclofenac (144O8QL0L1) ; Oleanolic Acid (6SMK8R7TGJ) ; Phospholipases A2 (EC 3.1.1.4) ; Viper Venoms
Language	English
Publishing date	2024-03-05
Publishing country	England
Document type	Journal Article
ZDB-ID	204479-1
ISSN	1879-3150 ; 0041-0101
ISSN (online)	1879-3150
ISSN	0041-0101
DOI	10.1016/j.toxicon.2024.107679
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Article ; Online: Resolving the polycistronic aftermath: Essential role of topoisomerase IA in preventing R-loops in Leishmania.

Das, Payel / Hazra, Arnab / Saha, Saradindu / Roy, Sadhana / Mukherjee, Mandrita / Hazra, Saugata / Majumdar, Hemanta K / BoseDasgupta, Somdeb

The Journal of biological chemistry

2024 Volume 300, Issue 4, Page(s) 107162

Abstract: ... which can facilitate R-loop formation. Therefore, to prevent such DNA-RNA hybrids, Leishmania has retained prokaryotic ...

Abstract	Kinetoplastid parasites are "living bridges" in the evolution from prokaryotes to higher eukaryotes. The near-intronless genome of the kinetoplastid Leishmania exhibits polycistronic transcription which can facilitate R-loop formation. Therefore, to prevent such DNA-RNA hybrids, Leishmania has retained prokaryotic-like DNA Topoisomerase IA (LdTOPIA) in the course of evolution. LdTOPIA is an essential enzyme that is expressed ubiquitously and is adapted for the compartmentalized eukaryotic form in harboring functional bipartite nuclear localization signals. Although exhibiting greater homology to mycobacterial TOPIA, LdTOPIA could functionally complement the growth lethality of Escherichia coli TOPIA null GyrB ts strain at non-permissive temperatures. Purified LdTOPIA exhibits Mg
MeSH term(s)	DNA Topoisomerases, Type I/metabolism ; DNA Topoisomerases, Type I/genetics ; R-Loop Structures ; Protozoan Proteins/metabolism ; Protozoan Proteins/genetics ; Protozoan Proteins/antagonists & inhibitors ; Protozoan Proteins/chemistry ; Leishmania/enzymology ; Leishmania/genetics ; Animals ; Escherichia coli/genetics ; Escherichia coli/metabolism
Chemical Substances	DNA Topoisomerases, Type I (EC 5.99.1.2) ; Protozoan Proteins
Language	English
Publishing date	2024-03-12
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2997-x
ISSN	1083-351X ; 0021-9258
ISSN (online)	1083-351X
ISSN	0021-9258
DOI	10.1016/j.jbc.2024.107162
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Article ; Online: Validation of the Hindi Versions of Three Autism Specific Screening Tools (M-CHAT-R/F, RBSK-ASQ and TABC) Widely Used in India in 16-30-Month-Old Children.

Mukherjee, Sharmila B / Manivannan, Dhanasangari / Sharma, Suvasini

Indian pediatrics

2024 Volume 61, Issue 4, Page(s) 323–329

Abstract: Objective: To determine the diagnostic accuracy of MCHAT-R/F, RBSK-ASQ and TABC for screening ... Non-ASD.: Results: Sensitivity and specificity of M-CHAT-R/F were 95.2% and 94.4%, of RBSK-ASQ were ...

Abstract	Objective: To determine the diagnostic accuracy of MCHAT-R/F, RBSK-ASQ and TABC for screening children aged 16 to 30 months for autism spectrum disorder (ASD). Method: Children aged 16 to 30 months were recruited from the pediatrics department. Those with known neurodevelopmental disorders, disabilities, severe medical illnesses, unavailable mothers, or lack of maternal understanding of Hindi, were excluded. The three index tools were translated into Hindi; each tool was piloted on 25 mothers and modified accordingly. The researcher was trained in administration, scoring and interpretation of the three tools. After enrollment the index tools and Developmental Profile (DP-3) were administered to each participant. The reference tool was a comprehensive assessment by experts that included clinical evaluation, computation of DP-3 scores, and application of diagnostic criteria of ASD; the final diagnosis being ASD or Non-ASD. Results: Sensitivity and specificity of M-CHAT-R/F were 95.2% and 94.4%, of RBSK-ASQ were 100% and 93.9%, and of TABC were 100% and 94.4%, respectively. Convergent validity was high (Spearman's correlation coefficient 0.98). Test-retest and inter-rater reliability of each tool was excellent (Intra-class correlation coefficient 1.00). Conclusion: All three tools had acceptable psychometric properties, high convergent validity and excellent test-retest and inter-rater reliability.
MeSH term(s)	Child ; Female ; Humans ; Infant ; Child, Preschool ; Autistic Disorder/diagnosis ; Autism Spectrum Disorder/diagnosis ; Reproducibility of Results ; Mothers ; India
Language	English
Publishing date	2024-03-07
Publishing country	India
Document type	Journal Article
ZDB-ID	402594-5
ISSN	0974-7559 ; 0019-6061
ISSN (online)	0974-7559
ISSN	0019-6061
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Article ; Online: Phytochemically analysed extract of Ageratina adenophora (Sprengel) R.M.King & H. Rob. initiates caspase 3-dependant apoptosis in colorectal cancer cell: A synergistic approach with chemotherapeutic drugs.

Chanu, Khaidem Devika / Thoithoisana, Soibam / Kar, Amit / Mukherjee, Pulok Kumar / Radhakrishnanand, P / Parmar, Keyur / Sharma, Nanaocha

Journal of ethnopharmacology

2023 Volume 322, Page(s) 117591

Abstract: Ethnopharmacological relevance: Ageratina adenophora (Sprengel) R.M.King & H.Rob. has been used ...

Abstract	Ethnopharmacological relevance: Ageratina adenophora (Sprengel) R.M.King & H.Rob. has been used as traditional indigenous medicine all across the globe for its diverse therapeutic applications such as anticancer, analgesic, antipyretic, thermogenic, antiseptic, antimicrobial as well as astringent. The various ethnic groups of India use plant parts to treat cuts and wounds, venomous insect bites, skin lesions, blisters, scabies and other skin irritations, gastritis and indigestion problems, cough, stomach ache and dysentery. The Portuguese traditionally extract the juice from the plant and use it for cancer, diabetes, liver disorder, gallbladder and stomach ailments. Nigerian healers use different parts of the plant to treat diabetes, fever and inflammation. Aim of the study: The aim of this study is to investigate the cytotoxic potential of A. adenophora hydroalcoholic leaves extract (AHL) on Colorectal cancer (CRC) cell lines (HCT-116, HCT-15 and HT-29), synergistic potential with chemotherapeutic drugs 5FU and Cisplatin as well as reactive oxygen species (ROS) generation, based on the sample collected from Mao district of Manipur, India. Identification of bioactive phytocompounds in AHL was also performed by HRLCMS. Methods: The AHL was evaluated for its cytotoxic as well as antiproliferative activities by 3-(4, 5-dimethylthiazol-2-yl)-2, 5 diphenyltetrazolium bromide (MTT) assay, clonogenic and cell migration assays. The total phenolic content (TPC) and total flavonoid content (TFC) were quantified by Folin-ciocalteu and Aluminium chloride assays respectively. Caspase 3 activation was evaluated using Caspase-3 Assay Kit. Apoptosis detection by flow cytometry was carried out using annexin V-FITC/PI apoptosis detection kit. The apoptotic cells were also visualized by Giemsa and 4',6-Diamidino-2-phenylindole (DAPI) staining. The intracellular Reactive oxygen species (ROS) generation was also evaluated using fluorescent probe 2',7'-dichlorodihydrofluorescein di-acetate (H Results: The AHL induced cytotoxic activity significantly in HCT-116 with IC Conclusion: The present study evaluates the effectiveness of AHL against Colorectal cancer cell lines. AHL is cytotoxic and induces apoptosis in HCT-116 cells by caspase 3 activation and increased ROS production that can be attributed to sesquiterpenoids. Thus, the plant A. adenophora has therapeutic potential for Colorectal cancer and can be further exploited for developing anticancer drug.
MeSH term(s)	Humans ; Ageratina/metabolism ; Reactive Oxygen Species/metabolism ; Caspase 3 ; Cisplatin/pharmacology ; HEK293 Cells ; India ; Apoptosis ; Antineoplastic Agents/pharmacology ; Colorectal Neoplasms/drug therapy ; Plant Extracts/pharmacology ; Plant Extracts/chemistry ; Diabetes Mellitus ; Flavonoids/pharmacology ; Fluorouracil/pharmacology ; Cell Line, Tumor
Chemical Substances	Reactive Oxygen Species ; Caspase 3 (EC 3.4.22.-) ; Cisplatin (Q20Q21Q62J) ; Antineoplastic Agents ; Plant Extracts ; Flavonoids ; Fluorouracil (U3P01618RT)
Language	English
Publishing date	2023-12-15
Publishing country	Ireland
Document type	Journal Article
ZDB-ID	134511-4
ISSN	1872-7573 ; 0378-8741
ISSN (online)	1872-7573
ISSN	0378-8741
DOI	10.1016/j.jep.2023.117591
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Article ; Online: Sustainability Challenges in Peptide Synthesis and Purification: From R&D to Production.

Isidro-Llobet, Albert / Kenworthy, Martin N / Mukherjee, Subha / Kopach, Michael E / Wegner, Katarzyna / Gallou, Fabrice / Smith, Austin G / Roschangar, Frank

The Journal of organic chemistry

2019 Volume 84, Issue 8, Page(s) 4615–4628

Abstract: In recent years, there has been a growing interest in therapeutic peptides within the pharmaceutical industry with more than 50 peptide drugs on the market, approximately 170 in clinical trials, and >200 in preclinical development. However, the current ... ...

Abstract	In recent years, there has been a growing interest in therapeutic peptides within the pharmaceutical industry with more than 50 peptide drugs on the market, approximately 170 in clinical trials, and >200 in preclinical development. However, the current state of the art in peptide synthesis involves primarily legacy technologies with use of large amounts of highly hazardous reagents and solvents and little focus on green chemistry and engineering. In 2016, the ACS Green Chemistry Institute Pharmaceutical Roundtable identified development of greener processes for peptide API as a critical unmet need, and as a result, a new Roundtable team formed to address this important area. The initial focus of this new team is to highlight best practices in peptide synthesis and encourage much needed innovations. In this Perspective, we aim to summarize the current challenges of peptide synthesis and purification in terms of sustainability, highlight possible solutions, and encourage synergies between academia, the pharmaceutical industry, and contract research organizations/contract manufacturing organizations.
MeSH term(s)	Drug Development ; Humans ; Molecular Structure ; Peptides/chemical synthesis ; Peptides/chemistry ; Peptides/isolation & purification
Chemical Substances	Peptides
Language	English
Publishing date	2019-03-22
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't ; Review
ZDB-ID	123490-0
ISSN	1520-6904 ; 0022-3263
ISSN (online)	1520-6904
ISSN	0022-3263
DOI	10.1021/acs.joc.8b03001
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Book ; Online: On Estimation of $L_{r}$-Norms in Gaussian White Noise Models

Han, Yanjun / Jiao, Jiantao / Mukherjee, Rajarshi

2017

Abstract: We provide a complete picture of asymptotically minimax estimation of $L_r$-norms (for any $r\ge 1$ ... of Lepski, Nemirovski and Spokoiny (1999), who considered the cases of $r=1$ (with poly-logarithmic gap ... between upper and lower bounds) and $r$ even (with asymptotically sharp upper and lower bounds) over H\"{o ...

Abstract	We provide a complete picture of asymptotically minimax estimation of $L_r$-norms (for any $r\ge 1$) of the mean in Gaussian white noise model over Nikolskii-Besov spaces. In this regard, we complement the work of Lepski, Nemirovski and Spokoiny (1999), who considered the cases of $r=1$ (with poly-logarithmic gap between upper and lower bounds) and $r$ even (with asymptotically sharp upper and lower bounds) over H\"{o}lder spaces. We additionally consider the case of asymptotically adaptive minimax estimation and demonstrate a difference between even and non-even $r$ in terms of an investigator's ability to produce asymptotically adaptive minimax estimators without paying a penalty. Comment: This version (v6) fixed an error in the proof of Lemma 5.6, and corrected some typos
Keywords	Mathematics - Statistics Theory ; Computer Science - Machine Learning
Publishing date	2017-10-10
Publishing country	us
Document type	Book ; Online
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Article ; Online: First records of three genera, Cyphomella Sther, 1977, Olecryptotendipes Zorina, 2007 and Robackia Sther, 1977 of the Harnischia complex from India with description of O. extentus sp. n., O. obtunsus sp. n. and R. aequilongia sp. n. (Diptera: Chironomidae).

Mukherjee, Bindarika / Hazra, Niladri

Zootaxa

2022 Volume 5091, Issue 2, Page(s) 330–340

Abstract: ... its description is supplemented. The molecular barcodes of three species, O. obtunsus sp. n., C. camelus and R ...

Abstract	Three genera, Cyphomella Sther, 1977, Olecryptotendipes Zorina, 2007 and Robackia Sther, 1977, of the Harnischia complex are recorded for the first time from India. Two new species of Olecryptotendipes and one new species of Robackia are described on the basis of adult males. Cyphomella camelus (Kieffer, 1955), described from Afrotropical and Palaearctic regions, is recorded for the first time from India and its description is supplemented. The molecular barcodes of three species, O. obtunsus sp. n., C. camelus and R. aequilongia sp. n., are also provided. Revised world keys to the adult males of the Olecryptotendipes and Robackia are also provided.
MeSH term(s)	Animals ; Camelus ; Chironomidae ; India ; Male
Language	English
Publishing date	2022-01-13
Publishing country	New Zealand
Document type	Journal Article
ISSN	1175-5334
ISSN (online)	1175-5334
DOI	10.11646/zootaxa.5091.2.5
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Article: R&D cooperation with entry

Bandyopadhyay, Siddhartha / Mukherjee, Arijit

The Manchester School Vol. 82, No. 1 , p. 52-70

2014 Volume 82, Issue 1, Page(s) 52–70

Author's details	by Siddhartha Bandyopadhyay and Arijit Mukherjee
Keywords	Industrieforschung ; Markteintritt ; Forschungskooperation ; Wissenstransfer ; Spillover-Effekt
Language	English
Publisher	Wiley-Blackwell
Publishing place	Oxford [u.a.]
Document type	Article
ZDB-ID	1418920-3 ; 2254024-6
ISSN	0025-2034
ISSN	0025-2034
Database	ECONomics Information System

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