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Article ; Online: Electrically Tunable Localized versus Delocalized Intralayer Moiré Excitons and Trions in a Twisted MoS

Dandu, Medha / Gupta, Garima / Dasika, Pushkar / Watanabe, Kenji / Taniguchi, Takashi / Majumdar, Kausik

ACS nano

2022 Volume 16, Issue 6, Page(s) 8983–8992

Abstract: Moiré superlattice (mSL)-induced sub-bands in twisted van der Waals homo- and heterostructures govern their optical and electrical properties, rendering additional degrees of freedom such as twist angle. Here, we demonstrate the moiré superlattice ... ...

Abstract	Moiré superlattice (mSL)-induced sub-bands in twisted van der Waals homo- and heterostructures govern their optical and electrical properties, rendering additional degrees of freedom such as twist angle. Here, we demonstrate the moiré superlattice effects on the intralayer excitons and trions in a twisted bilayer of MoS
Language	English
Publishing date	2022-06-09
Publishing country	United States
Document type	Journal Article
ISSN	1936-086X
ISSN (online)	1936-086X
DOI	10.1021/acsnano.2c00145
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Book ; Online: Electrically Tunable Localized versus Delocalized Intralayer Moir\'e Excitons and Trions in a Twisted MoS$_2$ Bilayer

Dandu, Medha / Gupta, Garima / Dasika, Pushkar / Watanabe, Kenji / Taniguchi, Takashi / Majumdar, Kausik

2022

Abstract: Moir\'e superlattice-induced sub-bands in twisted van der Waals homo- and hetero-structures govern their optical and electrical properties, rendering additional degrees of freedom such as twist angle. Here, we demonstrate the moir\'e superlattice effects ...

Abstract	Moir\'e superlattice-induced sub-bands in twisted van der Waals homo- and hetero-structures govern their optical and electrical properties, rendering additional degrees of freedom such as twist angle. Here, we demonstrate the moir\'e superlattice effects on the intralayer excitons and trions in a twisted bilayer of MoS$_2$ of H-type stacking at marginal twist angles. We identify the emission from localized and multiple delocalized sub-bands of intralayer moir\'e excitons and show their electrical modulation by the corresponding trion formation. The electrical control of the oscillator strength of the moir\'e excitons also results in a strong tunability of resonant Raman scattering. We find that the gate-induced doping significantly modulates the electronic moir\'e potential, however leaves the excitonic moir\'e confinement unaltered. This effect, coupled with variable moir\'e trap filling by tuning the optical excitation density, allows us to delineate the different phases of localized and delocalized moir\'e trions. We demonstrate that the moir\'e excitons exhibit strong valley coherence that changes in a striking non-monotonic W-shape with gating due to motional narrowing. These observations from the simultaneous electrostatic control of quasiparticle-dependent moir\'e potential will lead to exciting effects of tunable many-body phenomena in moir\'e superlattices.
Keywords	Condensed Matter - Mesoscale and Nanoscale Physics ; Condensed Matter - Materials Science ; Physics - Applied Physics ; Physics - Optics
Subject code	535
Publishing date	2022-03-11
Publishing country	us
Document type	Book ; Online
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Article: Homologous and heterologous interference requires bovine herpesvirus-1 glycoprotein D at the cell surface during virus entry.

Dasika, G K / Letchworth, G J

The Journal of general virology

2000 Volume 81, Issue Pt 4, Page(s) 1041–1049

Abstract: Expression of glycoprotein D (gD) of alphaherpesviruses protects cells from superinfection by homologous and heterologous viruses by a mechanism termed interference. We recently showed that MDBK cells expressing bovine herpesvirus (BHV)-1gD (MDBK(gD)) ... ...

Abstract	Expression of glycoprotein D (gD) of alphaherpesviruses protects cells from superinfection by homologous and heterologous viruses by a mechanism termed interference. We recently showed that MDBK cells expressing bovine herpesvirus (BHV)-1gD (MDBK(gD)) resist BHV-1, pseudorabies virus (PRV) and herpes simplex virus-1 (HSV-1) but not the more closely related BHV-5 infection as determined by the number of plaques produced. However, the plaque size is reduced in all four viral infections suggesting a block in cell-to-cell transmission. Here, we show that MDBK cells expressing truncated BHV-1 gD, designated MDBK(t-gD), secreted soluble gD and were fully susceptible to infection by all the four viruses when the cells were washed prior to infection. When MDBK cells or MDBK(t-gD) cells were treated with medium containing truncated gD prior to infection, they partially resisted BHV-1, PRV and HSV-1 but not BHV-5. Interestingly, both BHV-1 and BHV-5 formed normal-sized plaques in MDBK(t-gD) cells suggesting that the viruses were able to spread efficiently. Thus BHV-1 gD is required at the cell surface at the time of infection in order to block BHV-1, HSV-1 and PRV infections, consistent with a common coreceptor for the three gDs.
MeSH term(s)	Amino Acid Sequence ; Animals ; Cattle ; Cell Line ; Genetic Vectors ; Herpesviridae Infections/virology ; Herpesvirus 1, Bovine/physiology ; Molecular Sequence Data ; Transfection ; Viral Proteins/physiology ; Virus Replication
Chemical Substances	Viral Proteins ; bovine herpesvirus type-1 glycoproteins
Language	English
Publishing date	2000-04
Publishing country	England
Document type	Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
ZDB-ID	219316-4
ISSN	1465-2099 ; 0022-1317
ISSN (online)	1465-2099
ISSN	0022-1317
DOI	10.1099/0022-1317-81-4-1041
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Article: Cellular expression of bovine herpesvirus 1 gD inhibits cell-to-cell spread of two closely related viruses without blocking their primary infection.

Dasika, G K / Letchworth, G J

Virology

1999 Volume 254, Issue 1, Page(s) 24–36

Abstract: Alphaherpesviral glycoprotein D (gD) is a critical component of the cell membrane penetration system. Cells that express gD of herpes simplex virus type 1 (HSV1), pseudorabies virus (PRV), or bovine herpesvirus type 1.1 (BHV1.1) resist infection by the ... ...

Abstract	Alphaherpesviral glycoprotein D (gD) is a critical component of the cell membrane penetration system. Cells that express gD of herpes simplex virus type 1 (HSV1), pseudorabies virus (PRV), or bovine herpesvirus type 1.1 (BHV1.1) resist infection by the homologous virus due to interference with viral entry at the level of penetration. BHV1.1 gD interferes with the distantly related viruses HSV1 and PRV despite only a 30-40% sequence similarity and the complete absence of antigenic cross-reactivity among the three gDs. The six cysteines that form three intrachain disulfide bonds in HSV1 are also present in PRV and BHV1.1 gD, suggesting structural similarities among the gD homologs. Functional similarities were postulated to be responsible for cross-interference. To test this hypothesis, we constructed a BHV1.1 gD-expressing cell line (MDBKgD) and assessed its resistance to the homologous BHV1.1 and two closely related viruses, BHV1.2 and BHV5. The gDs of these viruses share 98. 3% and 86% amino acid identity with BHV1.1 gD and bound monoclonal antibodies directed against all five neutralizing epitopes mapped on BHV1.1 gD. MDBKgD cells were resistant to BHV1.1 but fully susceptible to BHV1.2 and BHV5 infection as measured by plaque numbers and single cycle growth kinetics. However, all three viruses, but not vesicular stomatitis virus, made smaller plaques on MDBKgD cells than on control cells. These data suggest that gD-mediated interference is expressed both at the level of initial infection and at the level of cell-to-cell spread and that these two levels can be distinguished by using closely related viruses.
MeSH term(s)	Amino Acid Sequence ; Animals ; Antigens, Viral/immunology ; Cattle ; Cell Line ; Gene Expression ; Herpesvirus 1, Bovine/physiology ; Herpesvirus 1, Human/physiology ; Humans ; Kinetics ; Molecular Sequence Data ; Sequence Homology, Amino Acid ; Viral Interference ; Viral Plaque Assay ; Viral Proteins/biosynthesis ; Viral Proteins/genetics
Chemical Substances	Antigens, Viral ; Viral Proteins ; bovine herpesvirus type-1 glycoproteins
Language	English
Publishing date	1999-02-01
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
ZDB-ID	200425-2
ISSN	1096-0341 ; 0042-6822
ISSN (online)	1096-0341
ISSN	0042-6822
DOI	10.1006/viro.1998.9553
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Article ; Online: Relationship between behavioral and physiological spectral-ripple discrimination.

Won, Jong Ho / Clinard, Christopher G / Kwon, Seeyoun / Dasika, Vasant K / Nie, Kaibao / Drennan, Ward R / Tremblay, Kelly L / Rubinstein, Jay T

Journal of the Association for Research in Otolaryngology : JARO

2011 Volume 12, Issue 3, Page(s) 375–393

Abstract: Previous studies have found a significant correlation between spectral-ripple discrimination and speech and music perception in cochlear implant (CI) users. This relationship could be of use to clinicians and scientists who are interested in using ... ...

Abstract	Previous studies have found a significant correlation between spectral-ripple discrimination and speech and music perception in cochlear implant (CI) users. This relationship could be of use to clinicians and scientists who are interested in using spectral-ripple stimuli in the assessment and habilitation of CI users. However, previous psychoacoustic tasks used to assess spectral discrimination are not suitable for all populations, and it would be beneficial to develop methods that could be used to test all age ranges, including pediatric implant users. Additionally, it is important to understand how ripple stimuli are processed in the central auditory system and how their neural representation contributes to behavioral performance. For this reason, we developed a single-interval, yes/no paradigm that could potentially be used both behaviorally and electrophysiologically to estimate spectral-ripple threshold. In experiment 1, behavioral thresholds obtained using the single-interval method were compared to thresholds obtained using a previously established three-alternative forced-choice method. A significant correlation was found (r = 0.84, p = 0.0002) in 14 adult CI users. The spectral-ripple threshold obtained using the new method also correlated with speech perception in quiet and noise. In experiment 2, the effect of the number of vocoder-processing channels on the behavioral and physiological threshold in normal-hearing listeners was determined. Behavioral thresholds, using the new single-interval method, as well as cortical P1-N1-P2 responses changed as a function of the number of channels. Better behavioral and physiological performance (i.e., better discrimination ability at higher ripple densities) was observed as more channels added. In experiment 3, the relationship between behavioral and physiological data was examined. Amplitudes of the P1-N1-P2 "change" responses were significantly correlated with d' values from the single-interval behavioral procedure. Results suggest that the single-interval procedure with spectral-ripple phase inversion in ongoing stimuli is a valid approach for measuring behavioral or physiological spectral resolution.
MeSH term(s)	Adult ; Aged ; Auditory Cortex/physiology ; Auditory Threshold ; Cochlear Implants ; Deafness/physiopathology ; Discrimination, Psychological ; Female ; Humans ; Male ; Middle Aged ; Psychoacoustics ; Psychometrics ; Speech Perception
Language	English
Publishing date	2011-01-27
Publishing country	United States
Document type	Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
ZDB-ID	2021417-0
ISSN	1438-7573 ; 1525-3961
ISSN (online)	1438-7573
ISSN	1525-3961
DOI	10.1007/s10162-011-0257-4
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Article: Homologous and heterologous interference requires bovine herpesvirus-1 glycoprotein D at the cell surface during virus entry

Dasika, G.K / Letchworth, G.J

Journal of general virology. Apr 2000. v. 81 (pt.4)

2000

Abstract	Expression of glycoprotein D (gD) of alphaherpesviruses protects cells from superinfection by homologous and heterologous viruses by a mechanism termed interference. We recently showed that MDBK cells expressing bovine herpesvirus (BHV)-1gD (MDBK(gD)) resist BHV-1, pseudorabies virus (PRV) and herpes simplex virus-1 (HSV-1) but not the more closely related BHV-5 infection as determined by the number of plaques produced. However, the plaque size is reduced in all four viral infections suggesting a block in cell-to-cell transmission. Here, we show that MDBK cells expressing truncated BHV-1 gD, designated MDBK(t-gD), secreted soluble gD and were fully susceptible to infection by all the four viruses when the cells were washed prior to infection. When MDBK cells or MDBK(t-gD) cells were treated with medium containing truncated gD prior to infection, they partially resisted BHV-1, PRV and HSV-1 but not BHV-5. Interestingly, both BHV-1 and BHV-5 formed normal-sized plaques in MDBK(t-gD) cells suggesting that the viruses were able to spread efficiently. Thus BHV-1 gD is required at the cell surface at the time of infection in order to block BHV-1, HSV-1 and PRV infections, consistent with a common coreceptor for the three gDs.
Keywords	viral diseases of animals and humans ; animal health ; animal diseases
Language	English
Dates of publication	2000-04
Size	p. 1041-1049.
Document type	Article
ZDB-ID	219316-4
ISSN	1465-2099 ; 0022-1317
ISSN (online)	1465-2099
ISSN	0022-1317
Database	NAL-Catalogue (AGRICOLA)

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Article: Cellular expression of bovine herpesvirus 1 gD inhibits cell-to-cell spread of two closely related viruses without blocking their primary infection

Dasika, G.K / Letchworth, G.J. III

Virology. Feb 1, 1999. v. 254 (1)

1999

Keywords	viral diseases of animals and humans ; animal health ; animal diseases
Language	English
Dates of publication	1999-0201
Size	p. 24-36.
Document type	Article
ZDB-ID	200425-2
ISSN	1096-0341 ; 0042-6822
ISSN (online)	1096-0341
ISSN	0042-6822
Database	NAL-Catalogue (AGRICOLA)

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Book ; Online: Automatic Pattern Classification by Unsupervised Learning Using Dimensionality Reduction of Data with Mirroring Neural Networks

Deepthi, Dasika Ratna / Krishna, G. R. Aditya / Eswaran, K.

2007

Abstract: This paper proposes an unsupervised learning technique by using Multi-layer Mirroring Neural Network and Forgy's clustering algorithm. Multi-layer Mirroring Neural Network is a neural network that can be trained with generalized data inputs (different ... ...

Abstract	This paper proposes an unsupervised learning technique by using Multi-layer Mirroring Neural Network and Forgy's clustering algorithm. Multi-layer Mirroring Neural Network is a neural network that can be trained with generalized data inputs (different categories of image patterns) to perform non-linear dimensionality reduction and the resultant low-dimensional code is used for unsupervised pattern classification using Forgy's algorithm. By adapting the non-linear activation function (modified sigmoidal function) and initializing the weights and bias terms to small random values, mirroring of the input pattern is initiated. In training, the weights and bias terms are changed in such a way that the input presented is reproduced at the output by back propagating the error. The mirroring neural network is capable of reducing the input vector to a great degree (approximately 1/30th the original size) and also able to reconstruct the input pattern at the output layer from this reduced code units. The feature set (output of central hidden layer) extracted from this network is fed to Forgy's algorithm, which classify input data patterns into distinguishable classes. In the implementation of Forgy's algorithm, initial seed points are selected in such a way that they are distant enough to be perfectly grouped into different categories. Thus a new method of unsupervised learning is formulated and demonstrated in this paper. This method gave impressive results when applied to classification of different image patterns. Comment: Presented in IEEE International Conference on Advances in Computer Vision and Information Technology (ACVIT-07), Nov. 28-30 2007
Keywords	Computer Science - Machine Learning ; Computer Science - Artificial Intelligence ; Computer Science - Neural and Evolutionary Computing
Subject code	006
Publishing date	2007-12-06
Publishing country	us
Document type	Book ; Online
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Article: Cloning and functional studies of a novel gene aberrantly expressed in RB-deficient embryos.

Yuan, S S / Cox, L A / Dasika, G K / Lee, E Y

Developmental biology

1997 Volume 207, Issue 1, Page(s) 62–75

Abstract: The tumor suppressor RB regulates diverse cellular processes such as G1/S transition, cell differentiation, and cell survival. Indeed, Rb-knockout mice exhibit phenotypes including ectopic mitosis, defective differentiation, and extensive apoptosis in ... ...

Abstract	The tumor suppressor RB regulates diverse cellular processes such as G1/S transition, cell differentiation, and cell survival. Indeed, Rb-knockout mice exhibit phenotypes including ectopic mitosis, defective differentiation, and extensive apoptosis in the neurons. Using differential display, a novel gene, Rig-1, was isolated based on its elevated expression in the hindbrain and spinal cord of Rb-knockout embryos. The longest open reading frame of Rig-1 encoded a polypeptide that consists of a putative extracellular segment with five immunoglobulin-like domains and three fibronectin III-like domains, a putative transmembrane domain, and a distinct intracellular segment. The Rig-1 sequence was 40% identical to the recently identified roundabout protein. Consistent with the predicted transmembrane nature of the protein, Rig-1 protein was present in the membranous fraction. Antisera raised against the putative extracellular and intracellular segments of Rig-1 reacted with an approximately 210-kDa protein in mouse embryonic CNS. Rig-1 mRNA was transiently expressed in the embryonic hindbrain and spinal cord. Elevated levels of Rig-1 mRNA and protein were found in Rb-/- embryos. Ectopic expression of a transmembrane form of Rig-1, but not the secreted form, promoted neuronal cell entrance to S phase and repressed the expression of a marker of differentiated neuron, Talpha1 tubulin. Thus Rig-1, a possible distant relative of roundabout, may mediate some of the pleiotropic roles of RB in the developing neurons.
MeSH term(s)	Alternative Splicing/genetics ; Amino Acid Sequence ; Animals ; Cell Cycle/genetics ; Central Nervous System/embryology ; Central Nervous System/growth & development ; Cloning, Molecular ; Embryonic and Fetal Development ; Fluorescent Antibody Technique ; Gene Expression Regulation, Developmental/genetics ; Immunoglobulins/genetics ; In Situ Hybridization ; Membrane Proteins/chemistry ; Membrane Proteins/genetics ; Mice ; Mice, Knockout ; Molecular Sequence Data ; Nerve Tissue Proteins/chemistry ; Nerve Tissue Proteins/genetics ; RNA, Messenger/genetics ; Receptors, Cell Surface ; Receptors, Immunologic/genetics ; Retinoblastoma Protein/genetics ; Sequence Analysis, DNA ; Sequence Homology, Amino Acid ; Roundabout Proteins
Chemical Substances	Immunoglobulins ; Membrane Proteins ; Nerve Tissue Proteins ; RNA, Messenger ; Receptors, Cell Surface ; Receptors, Immunologic ; Retinoblastoma Protein ; Robo3 protein, mouse
Language	English
Publishing date	1997-04-01
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, P.H.S.
ZDB-ID	1114-9
ISSN	1095-564X ; 0012-1606
ISSN (online)	1095-564X
ISSN	0012-1606
DOI	10.1006/dbio.1998.9141
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Article: Bovine herpesvirus type 2 is closely related to the primate alphaherpesviruses.

Ehlers, B / Goltz, M / Ejercito, M P / Dasika, G K / Letchworth, G J

Virus genes

1999 Volume 19, Issue 3, Page(s) 197–203

Abstract: ... polymerase (U(L)30), a large gene adjacent to the previously identified conserved cluster, and glycoprotein G ...

Abstract	Bovine herpesvirus type 2 (BoHV-2), also known as bovine mammillitis virus, is classified in the Family Herpesviridae, Subfamily Alphaherpesvirinae, and Genus Simplexvirus along with herpes simplex viruses type 1 and 2 (HSV-1 and HSV-2) and other primate simplexviruses on the basis of similarities in 4 genes within the 15 kb U(L) 23-29 cluster. This could be explained either by a global similarity or a recombination event that brought primate herpesviral sequences into a bovine virus. Our sequences for DNA polymerase (U(L)30), a large gene adjacent to the previously identified conserved cluster, and glycoprotein G (U(S)4), a gene as distant from the cluster as possible on the circularized genome, confirm the close relationship between BoHV-2 and the primate simplexviruses, and argue for a global similarity and probably a close evolutionary relationship. Thus one can speculate that BoHV-2 may represent a greater hazard to humans than has been appreciated previously.
MeSH term(s)	Alphaherpesvirinae/classification ; Alphaherpesvirinae/enzymology ; Alphaherpesvirinae/genetics ; Amino Acid Sequence ; Animals ; Cattle ; Cell Line ; DNA, Viral/analysis ; DNA-Directed DNA Polymerase/genetics ; Herpesvirus 2, Bovine/classification ; Herpesvirus 2, Bovine/enzymology ; Herpesvirus 2, Bovine/genetics ; Molecular Sequence Data ; Phylogeny ; Polymerase Chain Reaction ; Primates/virology ; Sequence Homology, Amino Acid
Chemical Substances	DNA, Viral ; DNA-Directed DNA Polymerase (EC 2.7.7.7)
Language	English
Publishing date	1999
Publishing country	United States
Document type	Journal Article
ZDB-ID	639496-6
ISSN	1572-994X ; 0920-8569
ISSN (online)	1572-994X
ISSN	0920-8569
DOI	10.1023/a:1008184630066
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