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  1. Article ; Online: Lower limb vertical stiffness and frontal plane angular impulse during perturbation-induced single limb stance and their associations with gait in individuals post-stroke.

    Shen, Keng-Hung / Borrelli, James / Gray, Vicki L / Rogers, Mark W / Hsiao, Hao-Yuan

    Journal of biomechanics

    2024  Volume 163, Page(s) 111917

    Abstract: After stroke, deficits in paretic single limb stance (SLS) are commonly observed and affect walking performance. During SLS, the hip abductor musculature is critical in providing vertical support and regulating balance. Although disrupted paretic hip ... ...

    Abstract After stroke, deficits in paretic single limb stance (SLS) are commonly observed and affect walking performance. During SLS, the hip abductor musculature is critical in providing vertical support and regulating balance. Although disrupted paretic hip abduction torque production has been identified in individuals post-stroke, interpretation of previous results is limited due to the discrepancies in weight-bearing conditions. Using a novel perturbation-based assessment that could induce SLS by removing the support surface underneath one limb, we aim to investigate whether deficits in hip abduction torque production, vertical body support, and balance regulation remain detectable during SLS when controlling for weight-bearing, and whether these measures are associated with gait performance. Our results showed that during the perturbation-induced SLS, individuals post-stroke had lower hip abduction torque, less vertical stiffness, and increased frontal plane angular impulse at the paretic limb compared to the non-paretic limb, while no differences were found between the paretic limb and healthy controls. In addition, vertical stiffness during perturbation-induced SLS was positively correlated with single support duration during gait at the paretic limb and predicted self-selected and fast walking speeds in individuals post-stroke. The findings indicate that reduced paretic hip abduction torque during SLS likely affects vertical support and balance control. Enhancing SLS hip abduction torque production could be an important rehabilitation target to improve walking function for individuals post-stroke.
    MeSH term(s) Humans ; Gait Disorders, Neurologic ; Gait/physiology ; Stroke/complications ; Walking/physiology ; Stroke Rehabilitation ; Hip ; Biomechanical Phenomena ; Paresis
    Language English
    Publishing date 2024-01-05
    Publishing country United States
    Document type Journal Article
    ZDB-ID 218076-5
    ISSN 1873-2380 ; 0021-9290
    ISSN (online) 1873-2380
    ISSN 0021-9290
    DOI 10.1016/j.jbiomech.2023.111917
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Nitrogen Cycling and Biosignatures in a Hyperarid Mars Analog Environment.

    Shen, Jianxun / Zerkle, Aubrey L / Claire, Mark W

    Astrobiology

    2021  Volume 22, Issue 2, Page(s) 127–142

    Abstract: The hyperarid Atacama Desert is a unique Mars-analog environment with a large near-surface soil nitrate reservoir due to the lack of rainfall leaching for millennia. We investigated nitrogen (N) cycling and organic matter dynamics in this nitrate-rich ... ...

    Abstract The hyperarid Atacama Desert is a unique Mars-analog environment with a large near-surface soil nitrate reservoir due to the lack of rainfall leaching for millennia. We investigated nitrogen (N) cycling and organic matter dynamics in this nitrate-rich terrestrial environment by analyzing the concentrations and isotopic compositions of nitrate, organic C, and organic N, coupled with microbial pathway-enzyme inferences, across a naturally occurring rainfall gradient. Nitrate deposits in sites with an annual precipitation of <10 mm carry atmospheric δ
    MeSH term(s) Environmental Monitoring/methods ; Extraterrestrial Environment ; Mars ; Nitrates/analysis ; Nitrogen/analysis ; Nitrogen Cycle ; Oxygen Isotopes
    Chemical Substances Nitrates ; Oxygen Isotopes ; Nitrogen (N762921K75)
    Language English
    Publishing date 2021-11-05
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2047736-3
    ISSN 1557-8070 ; 1531-1074
    ISSN (online) 1557-8070
    ISSN 1531-1074
    DOI 10.1089/ast.2021.0012
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Lower Limb Vertical Stiffness and Frontal Plane Angular Impulse during Perturbation-Induced Single Limb Stance and Their Associations with Gait in Individuals Post-Stroke.

    Shen, Keng-Hung / Borrelli, James / Gray, Vicki L / Rogers, Mark W / Hsiao, Hao-Yuan

    bioRxiv : the preprint server for biology

    2023  

    Abstract: Background: After stroke, deficits in paretic single limb stance (SLS) are commonly observed and affect walking performance. During SLS, the hip abductor musculature is critical in providing vertical support and regulating balance. Although disrupted ... ...

    Abstract Background: After stroke, deficits in paretic single limb stance (SLS) are commonly observed and affect walking performance. During SLS, the hip abductor musculature is critical in providing vertical support and regulating balance. Although disrupted paretic hip abduction torque production has been identified in individuals post-stroke, interpretation of previous results is limited due to the discrepancies in weight-bearing conditions.
    Objective: To investigate whether deficits in hip abduction torque production, vertical body support, and balance regulation remain during SLS when controlling for weight-bearing using a perturbation-based assessment, and whether these measures are associated with gait performance.
    Methods: We compared hip abduction torque, vertical stiffness, and frontal plane angular impulse between individuals post-stroke and healthy controls when SLS was induced by removing the support surface underneath one limb. We also tested for correlations between vertical stiffness and angular impulse during perturbation-induced SLS and gait parameters during overground walking.
    Results: During the perturbation-induced SLS, lower hip abduction torque, less vertical stiffness, and increased frontal plane angular impulse were observed at the paretic limb compared to the non-paretic limb, while no differences were found between the paretic limb and healthy controls. Vertical stiffness during perturbation-induced SLS was positively correlated with single support duration during gait at the paretic limb and predicted self-selected and fast walking speeds in individuals post-stroke.
    Conclusions: Reduced paretic hip abduction torque during SLS likely affects vertical support and balance control. Enhancing SLS hip abduction torque production could be an important rehabilitation target to improve walking function for individuals post-stroke.
    Language English
    Publishing date 2023-04-12
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2023.04.10.536288
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Author Correction: MIMIC-IV, a freely accessible electronic health record dataset.

    Johnson, Alistair E W / Bulgarelli, Lucas / Shen, Lu / Gayles, Alvin / Shammout, Ayad / Horng, Steven / Pollard, Tom J / Hao, Sicheng / Moody, Benjamin / Gow, Brian / Lehman, Li-Wei H / Celi, Leo A / Mark, Roger G

    Scientific data

    2023  Volume 10, Issue 1, Page(s) 219

    Language English
    Publishing date 2023-04-18
    Publishing country England
    Document type Published Erratum
    ZDB-ID 2775191-0
    ISSN 2052-4463 ; 2052-4463
    ISSN (online) 2052-4463
    ISSN 2052-4463
    DOI 10.1038/s41597-023-02136-9
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Author Correction: MIMIC-IV, a freely accessible electronic health record dataset.

    Johnson, Alistair E W / Bulgarelli, Lucas / Shen, Lu / Gayles, Alvin / Shammout, Ayad / Horng, Steven / Pollard, Tom J / Moody, Benjamin / Gow, Brian / Lehman, Li-Wei H / Celi, Leo A / Mark, Roger G

    Scientific data

    2023  Volume 10, Issue 1, Page(s) 31

    Language English
    Publishing date 2023-01-16
    Publishing country England
    Document type Published Erratum
    ZDB-ID 2775191-0
    ISSN 2052-4463 ; 2052-4463
    ISSN (online) 2052-4463
    ISSN 2052-4463
    DOI 10.1038/s41597-023-01945-2
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Spatial Variability of Microbial Communities and Salt Distributions Across a Latitudinal Aridity Gradient in the Atacama Desert.

    Shen, Jianxun / Wyness, Adam J / Claire, Mark W / Zerkle, Aubrey L

    Microbial ecology

    2021  Volume 82, Issue 2, Page(s) 442–458

    Abstract: Over the past 150 million years, the Chilean Atacama Desert has been transformed into one of the most inhospitable landscapes by geophysical changes, which makes it an ideal Mars analog that has been explored for decades. However, a heavy rainfall that ... ...

    Abstract Over the past 150 million years, the Chilean Atacama Desert has been transformed into one of the most inhospitable landscapes by geophysical changes, which makes it an ideal Mars analog that has been explored for decades. However, a heavy rainfall that occurred in the Atacama in 2017 provides a unique opportunity to study the response of resident extremophiles to rapid environmental change associated with excessive water and salt shock. Here we combine mineral/salt composition measurements, amendment cell culture experiments, and next-generation sequencing analyses to study the variations in salts and microbial communities along a latitudinal aridity gradient of the Atacama Desert. In addition, we examine the reshuffling of Atacama microbiomes after the rainfall event. Analysis of microbial community composition revealed that soils within the southern arid desert were consistently dominated by Actinobacteria, Chloroflexi, Proteobacteria, Firmicutes, Bacteroidetes, Gemmatimonadetes, Planctomycetes, and Acidobacteria, and Verrucomicrobia. Intriguingly, the hyperarid microbial consortia exhibited a similar pattern to the more southern desert. Salts at the shallow subsurface were dissolved and leached down to a deeper layer, challenging indigenous microorganisms with the increasing osmotic stress. Microbial viability was found to change with aridity and rainfall events. This study sheds light on the structure of xerotolerant, halotolerant, and radioresistant microbiomes from the hyperarid northern desert to the less arid southern transition region, as well as their response to changes in water availability.
    MeSH term(s) Bacteria/genetics ; Bacteroidetes ; Desert Climate ; Microbiota ; Soil Microbiology
    Language English
    Publishing date 2021-01-13
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1462065-0
    ISSN 1432-184X ; 0095-3628
    ISSN (online) 1432-184X
    ISSN 0095-3628
    DOI 10.1007/s00248-020-01672-w
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: Impact of KRAS mutations and co-mutations on clinical outcomes in pancreatic ductal adenocarcinoma.

    Yousef, Abdelrahman / Yousef, Mahmoud / Chowdhury, Saikat / Abdilleh, Kawther / Knafl, Mark / Edelkamp, Paul / Alfaro-Munoz, Kristin / Chacko, Ray / Peterson, Jennifer / Smaglo, Brandon G / Wolff, Robert A / Pant, Shubham / Lee, Michael S / Willis, Jason / Overman, Michael / Doss, Sudheer / Matrisian, Lynn / Hurd, Mark W / Snyder, Rebecca /
    Katz, Matthew H G / Wang, Huamin / Maitra, Anirban / Shen, John Paul / Zhao, Dan

    NPJ precision oncology

    2024  Volume 8, Issue 1, Page(s) 27

    Abstract: The relevance of KRAS mutation alleles to clinical outcome remains inconclusive in pancreatic adenocarcinoma (PDAC). We conducted a retrospective study of 803 patients with PDAC (42% with metastatic disease) at MD Anderson Cancer Center. Overall survival ...

    Abstract The relevance of KRAS mutation alleles to clinical outcome remains inconclusive in pancreatic adenocarcinoma (PDAC). We conducted a retrospective study of 803 patients with PDAC (42% with metastatic disease) at MD Anderson Cancer Center. Overall survival (OS) analysis demonstrated that KRAS mutation status and subtypes were prognostic (p < 0.001). Relative to patients with KRAS wildtype tumors (median OS 38 months), patients with KRAS
    Language English
    Publishing date 2024-02-03
    Publishing country England
    Document type Journal Article
    ISSN 2397-768X
    ISSN 2397-768X
    DOI 10.1038/s41698-024-00505-0
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: MIMIC-IV, a freely accessible electronic health record dataset.

    Johnson, Alistair E W / Bulgarelli, Lucas / Shen, Lu / Gayles, Alvin / Shammout, Ayad / Horng, Steven / Pollard, Tom J / Hao, Sicheng / Moody, Benjamin / Gow, Brian / Lehman, Li-Wei H / Celi, Leo A / Mark, Roger G

    Scientific data

    2023  Volume 10, Issue 1, Page(s) 1

    Abstract: Digital data collection during routine clinical practice is now ubiquitous within hospitals. The data contains valuable information on the care of patients and their response to treatments, offering exciting opportunities for research. Typically, data ... ...

    Abstract Digital data collection during routine clinical practice is now ubiquitous within hospitals. The data contains valuable information on the care of patients and their response to treatments, offering exciting opportunities for research. Typically, data are stored within archival systems that are not intended to support research. These systems are often inaccessible to researchers and structured for optimal storage, rather than interpretability and analysis. Here we present MIMIC-IV, a publicly available database sourced from the electronic health record of the Beth Israel Deaconess Medical Center. Information available includes patient measurements, orders, diagnoses, procedures, treatments, and deidentified free-text clinical notes. MIMIC-IV is intended to support a wide array of research studies and educational material, helping to reduce barriers to conducting clinical research.
    MeSH term(s) Humans ; Databases, Factual ; Electronic Health Records ; Hospitals
    Language English
    Publishing date 2023-01-03
    Publishing country England
    Document type Dataset ; Journal Article
    ZDB-ID 2775191-0
    ISSN 2052-4463 ; 2052-4463
    ISSN (online) 2052-4463
    ISSN 2052-4463
    DOI 10.1038/s41597-022-01899-x
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Measuring Handoffs: Can We Improve the Transition of Hospitalized Children?

    Quinonez, Ricardo A / Shen, Mark W

    Pediatrics

    2016  Volume 138, Issue 2

    MeSH term(s) Child ; Child, Hospitalized ; Humans ; Internship and Residency ; Patient Handoff
    Language English
    Publishing date 2016
    Publishing country United States
    Document type Journal Article ; Comment
    ZDB-ID 207677-9
    ISSN 1098-4275 ; 0031-4005
    ISSN (online) 1098-4275
    ISSN 0031-4005
    DOI 10.1542/peds.2016-1546
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: CD115

    Martin, Matthew D / Skon-Hegg, Cara / Kim, Caleb Y / Xu, Julie / Kucaba, Tamara A / Swanson, Whitney / Pierson, Mark J / Williams, Jesse W / Badovinac, Vladimir P / Shen, Steven S / Ingersoll, Molly A / Griffith, Thomas S

    Cell reports

    2023  Volume 42, Issue 11

    Abstract: ... ...

    Abstract Uropathogenic
    MeSH term(s) Mice ; Animals ; Monocytes ; Escherichia coli ; Immunity, Innate ; Urinary Tract Infections ; Escherichia coli Infections ; Receptor Protein-Tyrosine Kinases ; Sepsis ; Uropathogenic Escherichia coli
    Chemical Substances Receptor Protein-Tyrosine Kinases (EC 2.7.10.1)
    Language English
    Publishing date 2023-10-28
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2649101-1
    ISSN 2211-1247 ; 2211-1247
    ISSN (online) 2211-1247
    ISSN 2211-1247
    DOI 10.1016/j.celrep.2023.113345
    Database MEDical Literature Analysis and Retrieval System OnLINE

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