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  1. Article ; Online: Functional Implications of Dynamic Structures of Intrinsically Disordered Proteins Revealed by High-Speed AFM Imaging.

    Ando, Toshio

    Biomolecules

    2022  Volume 12, Issue 12

    Abstract: The unique functions of intrinsically disordered proteins (IDPs) depend on their dynamic protean structure that often eludes analysis. High-speed atomic force microscopy (HS-AFM) can conduct this difficult analysis by directly visualizing individual IDP ... ...

    Abstract The unique functions of intrinsically disordered proteins (IDPs) depend on their dynamic protean structure that often eludes analysis. High-speed atomic force microscopy (HS-AFM) can conduct this difficult analysis by directly visualizing individual IDP molecules in dynamic motion at sub-molecular resolution. After brief descriptions of the microscopy technique, this review first shows that the intermittent tip-sample contact does not alter the dynamic structure of IDPs and then describes how the number of amino acids contained in a fully disordered region can be estimated from its HS-AFM images. Next, the functional relevance of a dumbbell-like structure that has often been observed on IDPs is discussed. Finally, the dynamic structural information of two measles virus IDPs acquired from their HS-AFM and NMR analyses is described together with its functional implications.
    Language English
    Publishing date 2022-12-14
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2701262-1
    ISSN 2218-273X ; 2218-273X
    ISSN (online) 2218-273X
    ISSN 2218-273X
    DOI 10.3390/biom12121876
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Biophysical reviews top five: atomic force microscopy in biophysics.

    Ando, Toshio

    Biophysical reviews

    2021  Volume 13, Issue 4, Page(s) 455–458

    Abstract: Since its invention in the late 1980s, atomic force microscopy (AFM), in which a nanometer-sized tip is used to physically interrogate the properties of a surface at high resolution, has brought about scientific revolutions in both surface science and ... ...

    Abstract Since its invention in the late 1980s, atomic force microscopy (AFM), in which a nanometer-sized tip is used to physically interrogate the properties of a surface at high resolution, has brought about scientific revolutions in both surface science and biological physics. In response to a request from the journal, I have prepared a top-five list of scientific papers that I feel represent truly landmark developments in the use of AFM in the biophysics field. This selection is necessarily limited by number (just five) and subjective (my opinion) and I offer my apologies to those not appearing in this list.
    Language English
    Publishing date 2021-07-10
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 2486483-3
    ISSN 1867-2469 ; 1867-2450
    ISSN (online) 1867-2469
    ISSN 1867-2450
    DOI 10.1007/s12551-021-00820-x
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Biophysics in Kanazawa University.

    Ando, Toshio

    Biophysical reviews

    2020  Volume 12, Issue 2, Page(s) 249–251

    Language English
    Publishing date 2020-02-14
    Publishing country Germany
    Document type Letter
    ZDB-ID 2486483-3
    ISSN 1867-2469 ; 1867-2450
    ISSN (online) 1867-2469
    ISSN 1867-2450
    DOI 10.1007/s12551-020-00635-2
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Studies on the impellers generating force in muscle.

    Ando, Toshio

    Biophysical reviews

    2020  Volume 12, Issue 4, Page(s) 767–769

    Language English
    Publishing date 2020-06-11
    Publishing country Germany
    Document type Letter
    ZDB-ID 2486483-3
    ISSN 1867-2469 ; 1867-2450
    ISSN (online) 1867-2469
    ISSN 1867-2450
    DOI 10.1007/s12551-020-00705-5
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Protein dynamics by the combination of high-speed AFM and computational modeling.

    Flechsig, Holger / Ando, Toshio

    Current opinion in structural biology

    2023  Volume 80, Page(s) 102591

    Abstract: High-speed atomic force microscopy (HS-AFM) allows direct observation of biological molecules in dynamic action. However, HS-AFM has no atomic resolution. This article reviews recent progress of computational methods to infer high-resolution information, ...

    Abstract High-speed atomic force microscopy (HS-AFM) allows direct observation of biological molecules in dynamic action. However, HS-AFM has no atomic resolution. This article reviews recent progress of computational methods to infer high-resolution information, including the construction of 3D atomistic structures, from experimentally acquired resolution-limited HS-AFM images.
    MeSH term(s) Computer Simulation ; Microscopy, Atomic Force/methods
    Language English
    Publishing date 2023-04-17
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 1068353-7
    ISSN 1879-033X ; 0959-440X
    ISSN (online) 1879-033X
    ISSN 0959-440X
    DOI 10.1016/j.sbi.2023.102591
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Technical advances in high-speed atomic force microscopy.

    Fukuda, Shingo / Ando, Toshio

    Biophysical reviews

    2023  Volume 15, Issue 6, Page(s) 2045–2058

    Abstract: It has been 30 years since the outset of developing high-speed atomic force microscopy (HS-AFM), and 15 years have passed since its establishment in 2008. This advanced microscopy is capable of directly visualizing individual biological macromolecules in ...

    Abstract It has been 30 years since the outset of developing high-speed atomic force microscopy (HS-AFM), and 15 years have passed since its establishment in 2008. This advanced microscopy is capable of directly visualizing individual biological macromolecules in dynamic action and has been widely used to answer important questions that are inaccessible by other approaches. The number of publications on the bioapplications of HS-AFM has rapidly increased in recent years and has already exceeded 350. Although less visible than these biological studies, efforts have been made for further technical developments aimed at enhancing the fundamental performance of HS-AFM, such as imaging speed, low sample disturbance, and scan size, as well as expanding its functionalities, such as correlative microscopy, temperature control, buffer exchange, and sample manipulations. These techniques can expand the range of HS-AFM applications. After summarizing the key technologies underlying HS-AFM, this article focuses on recent technical advances and discusses next-generation HS-AFM.
    Language English
    Publishing date 2023-12-12
    Publishing country Germany
    Document type Journal Article ; Review
    ZDB-ID 2486483-3
    ISSN 1867-2469 ; 1867-2450
    ISSN (online) 1867-2469
    ISSN 1867-2450
    DOI 10.1007/s12551-023-01171-5
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: High-speed atomic force microscopy.

    Ando, Toshio

    Current opinion in chemical biology

    2019  Volume 51, Page(s) 105–112

    Abstract: High-speed atomic force microscopy (HS-AFM) is a unique tool for molecular imaging. It can directly visualize protein molecules during their functional activity at high spatiotemporal resolution, without a marker being attached to the molecules. ... ...

    Abstract High-speed atomic force microscopy (HS-AFM) is a unique tool for molecular imaging. It can directly visualize protein molecules during their functional activity at high spatiotemporal resolution, without a marker being attached to the molecules. Molecular dynamics filmed with HS-AFM can provide mechanistic insights into the functional molecular processes that are hard to be attained with other approaches. In this mini review, I highlight some of recent relevant studies of proteins by HS-AFM imaging after brief descriptions of AFM and HS-AFM.
    MeSH term(s) Microscopy, Atomic Force/methods ; Molecular Dynamics Simulation ; Molecular Imaging/methods ; Proteins/chemistry
    Chemical Substances Proteins
    Language English
    Publishing date 2019-06-27
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 1439176-4
    ISSN 1879-0402 ; 1367-5931
    ISSN (online) 1879-0402
    ISSN 1367-5931
    DOI 10.1016/j.cbpa.2019.05.010
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article: [Nontechnical Skills for Neurology Residents].

    Ando, Tetsuo / Fukutake, Toshio

    Brain and nerve = Shinkei kenkyu no shinpo

    2022  Volume 74, Issue 1, Page(s) 22–24

    Abstract: Nontechnical skills," such as resilience, communication, management, information literacy, and educational capability, are required to be an the effective neurologist. Neurology residents should learn nontechnical skills in their residency programs. ...

    Abstract "Nontechnical skills," such as resilience, communication, management, information literacy, and educational capability, are required to be an the effective neurologist. Neurology residents should learn nontechnical skills in their residency programs.
    MeSH term(s) Clinical Competence ; Communication ; Humans ; Internship and Residency ; Neurology
    Language Japanese
    Publishing date 2022-01-06
    Publishing country Japan
    Document type Journal Article
    ZDB-ID 390389-8
    ISSN 1344-8129 ; 1881-6096 ; 0006-8969
    ISSN (online) 1344-8129
    ISSN 1881-6096 ; 0006-8969
    DOI 10.11477/mf.1416201970
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Visualization of intrinsically disordered proteins by high-speed atomic force microscopy.

    Kodera, Noriyuki / Ando, Toshio

    Current opinion in structural biology

    2022  Volume 72, Page(s) 260–266

    Abstract: High-speed atomic force microscopy (HS-AFM) is a powerful tool established 13 years ago. This methodology can capture individual protein molecules carrying out functional activities under near-physiological conditions, without chemical labeling, at 2-3 ... ...

    Abstract High-speed atomic force microscopy (HS-AFM) is a powerful tool established 13 years ago. This methodology can capture individual protein molecules carrying out functional activities under near-physiological conditions, without chemical labeling, at 2-3 nm lateral and ∼0.1 nm vertical spatial resolution, and at sub-100 ms temporal resolution. Although most biological HS-AFM studies thus far target structured proteins, HS-AFM is also ideally suited to study the dynamics of intrinsically disordered proteins. Here we review some of the dynamic structures and processes of intrinsically disordered proteins that have been unveiled by HS-AFM imaging.
    MeSH term(s) Intrinsically Disordered Proteins/chemistry ; Microscopy, Atomic Force/methods
    Chemical Substances Intrinsically Disordered Proteins
    Language English
    Publishing date 2022-01-05
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 1068353-7
    ISSN 1879-033X ; 0959-440X
    ISSN (online) 1879-033X
    ISSN 0959-440X
    DOI 10.1016/j.sbi.2021.11.014
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Guide to studying intrinsically disordered proteins by high-speed atomic force microscopy.

    Kodera, Noriyuki / Ando, Toshio

    Methods (San Diego, Calif.)

    2022  Volume 207, Page(s) 44–56

    Abstract: Intrinsically disordered proteins (IDPs) are partially or entirely disordered. Their intrinsically disordered regions (IDRs) dynamically explore a wide range of structural space by their highly flexible nature. Due to this distinct feature largely ... ...

    Abstract Intrinsically disordered proteins (IDPs) are partially or entirely disordered. Their intrinsically disordered regions (IDRs) dynamically explore a wide range of structural space by their highly flexible nature. Due to this distinct feature largely different from structured proteins, conventional structural analyses relying on ensemble averaging is unsuitable for characterizing the dynamic structure of IDPs. Therefore, single-molecule measurement tools have been desired in IDP studies. High-speed atomic force microscopy (HS-AFM) is a unique tool that allows us to directly visualize single biomolecules at 2-3 nm lateral and ∼ 0.1 nm vertical spatial resolution, and at sub-100 ms temporal resolution under near physiological conditions, without any chemical labeling. HS-AFM has been successfully used not only to characterize the shape and motion of IDP molecules but also to visualize their function-related dynamics. In this article, after reviewing the principle and current performances of HS-AFM, we describe experimental considerations in the HS-AFM imaging of IDPs and methods to quantify molecular features from captured images. Finally, we outline recent HS-AFM imaging studies of IDPs.
    MeSH term(s) Microscopy, Atomic Force/methods ; Intrinsically Disordered Proteins/chemistry ; Inosine Diphosphate
    Chemical Substances Intrinsically Disordered Proteins ; Inosine Diphosphate (86-04-4)
    Language English
    Publishing date 2022-08-30
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 1066584-5
    ISSN 1095-9130 ; 1046-2023
    ISSN (online) 1095-9130
    ISSN 1046-2023
    DOI 10.1016/j.ymeth.2022.08.008
    Database MEDical Literature Analysis and Retrieval System OnLINE

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