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  1. Article ; Online: Targeting Replication Stress Response Pathways to Enhance Genotoxic Chemo- and Radiotherapy.

    Nickoloff, Jac A

    Molecules (Basel, Switzerland)

    2022  Volume 27, Issue 15

    Abstract: Proliferating cells regularly experience replication stress caused by spontaneous DNA damage that results from endogenous reactive oxygen species (ROS), DNA sequences that can assume secondary and tertiary structures, and collisions between opposing ... ...

    Abstract Proliferating cells regularly experience replication stress caused by spontaneous DNA damage that results from endogenous reactive oxygen species (ROS), DNA sequences that can assume secondary and tertiary structures, and collisions between opposing transcription and replication machineries. Cancer cells face additional replication stress, including oncogenic stress that results from the dysregulation of fork progression and origin firing, and from DNA damage induced by radiotherapy and most cancer chemotherapeutic agents. Cells respond to such stress by activating a complex network of sensor, signaling and effector pathways that protect genome integrity. These responses include slowing or stopping active replication forks, protecting stalled replication forks from collapse, preventing late origin replication firing, stimulating DNA repair pathways that promote the repair and restart of stalled or collapsed replication forks, and activating dormant origins to rescue adjacent stressed forks. Currently, most cancer patients are treated with genotoxic chemotherapeutics and/or ionizing radiation, and cancer cells can gain resistance to the resulting replication stress by activating pro-survival replication stress pathways. Thus, there has been substantial effort to develop small molecule inhibitors of key replication stress proteins to enhance tumor cell killing by these agents. Replication stress targets include ATR, the master kinase that regulates both normal replication and replication stress responses; the downstream signaling kinase Chk1; nucleases that process stressed replication forks (MUS81, EEPD1, Metnase); the homologous recombination catalyst RAD51; and other factors including ATM, DNA-PKcs, and PARP1. This review provides an overview of replication stress response pathways and discusses recent pre-clinical studies and clinical trials aimed at improving cancer therapy by targeting replication stress response factors.
    MeSH term(s) Cell Cycle Proteins/metabolism ; DNA Damage ; DNA Repair ; DNA Replication ; Endodeoxyribonucleases/metabolism ; Homologous Recombination ; Humans
    Chemical Substances Cell Cycle Proteins ; EEPD1 protein, human (EC 3.1.-) ; Endodeoxyribonucleases (EC 3.1.-)
    Language English
    Publishing date 2022-07-25
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 1413402-0
    ISSN 1420-3049 ; 1431-5165 ; 1420-3049
    ISSN (online) 1420-3049
    ISSN 1431-5165 ; 1420-3049
    DOI 10.3390/molecules27154736
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Toward Greater Precision in Cancer Radiotherapy.

    Nickoloff, Jac A

    Cancer research

    2021  Volume 81, Issue 12, Page(s) 3156–3157

    Abstract: The cellular DNA damage response (DDR) is a key factor in tumor suppression and tumor responses to genotoxic chemo- and radiotherapy. Master DDR regulators include three phosphatidyl inositol 3' kinase-related kinases (PIKK) called ATM, ATR, and the ... ...

    Abstract The cellular DNA damage response (DDR) is a key factor in tumor suppression and tumor responses to genotoxic chemo- and radiotherapy. Master DDR regulators include three phosphatidyl inositol 3' kinase-related kinases (PIKK) called ATM, ATR, and the catalytic subunit of DNA-dependent protein kinase, DNA-PKcs. Among their many functions, PIKKs regulate repair of DNA double-strand breaks (DSB) by homologous recombination (HR) and nonhomologous end-joining (NHEJ). Ionizing radiation induces DSBs that are either widely dispersed and efficiently repaired, or clustered and poorly repaired by the dominant NHEJ pathway. The inefficient repair of clustered DSBs by NHEJ shifts repair toward the competing HR pathway. In this issue of
    MeSH term(s) DNA Breaks, Double-Stranded ; DNA Damage ; DNA End-Joining Repair ; Homologous Recombination ; Neoplasms/genetics ; Neoplasms/radiotherapy ; Radiation, Ionizing
    Language English
    Publishing date 2021-11-30
    Publishing country United States
    Document type Journal Article ; Comment
    ZDB-ID 1432-1
    ISSN 1538-7445 ; 0008-5472
    ISSN (online) 1538-7445
    ISSN 0008-5472
    DOI 10.1158/0008-5472.CAN-21-0664
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Targeting Replication Stress Response Pathways to Enhance Genotoxic Chemo- and Radiotherapy

    Jac A. Nickoloff

    Molecules, Vol 27, Iss 15, p

    2022  Volume 4736

    Abstract: Proliferating cells regularly experience replication stress caused by spontaneous DNA damage that results from endogenous reactive oxygen species (ROS), DNA sequences that can assume secondary and tertiary structures, and collisions between opposing ... ...

    Abstract Proliferating cells regularly experience replication stress caused by spontaneous DNA damage that results from endogenous reactive oxygen species (ROS), DNA sequences that can assume secondary and tertiary structures, and collisions between opposing transcription and replication machineries. Cancer cells face additional replication stress, including oncogenic stress that results from the dysregulation of fork progression and origin firing, and from DNA damage induced by radiotherapy and most cancer chemotherapeutic agents. Cells respond to such stress by activating a complex network of sensor, signaling and effector pathways that protect genome integrity. These responses include slowing or stopping active replication forks, protecting stalled replication forks from collapse, preventing late origin replication firing, stimulating DNA repair pathways that promote the repair and restart of stalled or collapsed replication forks, and activating dormant origins to rescue adjacent stressed forks. Currently, most cancer patients are treated with genotoxic chemotherapeutics and/or ionizing radiation, and cancer cells can gain resistance to the resulting replication stress by activating pro-survival replication stress pathways. Thus, there has been substantial effort to develop small molecule inhibitors of key replication stress proteins to enhance tumor cell killing by these agents. Replication stress targets include ATR, the master kinase that regulates both normal replication and replication stress responses; the downstream signaling kinase Chk1; nucleases that process stressed replication forks (MUS81, EEPD1, Metnase); the homologous recombination catalyst RAD51; and other factors including ATM, DNA-PKcs, and PARP1. This review provides an overview of replication stress response pathways and discusses recent pre-clinical studies and clinical trials aimed at improving cancer therapy by targeting replication stress response factors.
    Keywords DNA replication stress ; DNA damage response ; oncogenic stress ; genotoxic cancer therapy ; targeted therapy ; Organic chemistry ; QD241-441
    Subject code 570 ; 612
    Language English
    Publishing date 2022-07-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  4. Article ; Online: Paths from DNA damage and signaling to genome rearrangements via homologous recombination.

    Nickoloff, Jac A

    Mutation research

    2017  Volume 806, Page(s) 64–74

    Abstract: DNA damage is a constant threat to genome integrity. DNA repair and damage signaling networks play a central role maintaining genome stability, suppressing tumorigenesis, and determining tumor response to common cancer chemotherapeutic agents and ... ...

    Abstract DNA damage is a constant threat to genome integrity. DNA repair and damage signaling networks play a central role maintaining genome stability, suppressing tumorigenesis, and determining tumor response to common cancer chemotherapeutic agents and radiotherapy. DNA double-strand breaks (DSBs) are critical lesions induced by ionizing radiation and when replication forks encounter damage. DSBs can result in mutations and large-scale genome rearrangements reflecting mis-repair by non-homologous end joining or homologous recombination. Ionizing radiation induces genetic change immediately, and it also triggers delayed events weeks or even years after exposure, long after the initial damage has been repaired or diluted through cell division. This review covers DNA damage signaling and repair pathways and cell fate following genotoxic insult, including immediate and delayed genome instability and cell survival/cell death pathways.
    MeSH term(s) DNA Damage ; Gene Rearrangement ; Genome, Human ; Genomic Instability ; Homologous Recombination ; Humans ; Signal Transduction
    Language English
    Publishing date 2017-07-24
    Publishing country Netherlands
    Document type Journal Article ; Review ; Research Support, N.I.H., Extramural
    ZDB-ID 206607-5
    ISSN 1873-135X ; 1383-5718 ; 0027-5107 ; 0165-1110 ; 0165-1161 ; 0165-7992 ; 0921-8777 ; 0165-1218 ; 1383-5726 ; 0167-8817 ; 0921-8734 ; 1383-5742
    ISSN (online) 1873-135X
    ISSN 1383-5718 ; 0027-5107 ; 0165-1110 ; 0165-1161 ; 0165-7992 ; 0921-8777 ; 0165-1218 ; 1383-5726 ; 0167-8817 ; 0921-8734 ; 1383-5742
    DOI 10.1016/j.mrfmmm.2017.07.008
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Photon, light ion, and heavy ion cancer radiotherapy: paths from physics and biology to clinical practice.

    Nickoloff, Jac A

    Annals of translational medicine

    2015  Volume 3, Issue 21, Page(s) 336

    Abstract: External beam radiotherapy has proven highly effective against a wide range of cancers, and in recent decades there have been rapid advances with traditional photon-based (X-ray) radiotherapy and the development of two particle-based techniques, proton ... ...

    Abstract External beam radiotherapy has proven highly effective against a wide range of cancers, and in recent decades there have been rapid advances with traditional photon-based (X-ray) radiotherapy and the development of two particle-based techniques, proton and carbon ion radiotherapy (CIRT). There are major cost differences and both physical and biological differences among these modalities that raise important questions about relative treatment efficacy and cost-effectiveness. Randomized clinical trials (RCTs) represent the gold standard for comparing treatments, but there are significant cost and ethical barriers to their wide-spread use. Meta-analysis of non-coordinated clinical trials data is another tool that can be used to compare treatments, and while this approach has recognized limitations, it is argued that meta-analysis represents an early stage of investigation that can help inform the design of future RCTs.
    Language English
    Publishing date 2015-12-17
    Publishing country China
    Document type Journal Article
    ZDB-ID 2893931-1
    ISSN 2305-5847 ; 2305-5839
    ISSN (online) 2305-5847
    ISSN 2305-5839
    DOI 10.3978/j.issn.2305-5839.2015.12.18
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Book: DNA damage and repair / 1

    Nickoloff, Jac A.

    (Contemporary cancer research ; [1])

    1998  

    Author's details ed. by Jac A. Nickoloff
    Series title Contemporary cancer research ; [1]
    DNA damage and repair
    Collection DNA damage and repair
    Language English
    Size XIII, 626 S. : Ill., graph. Darst.
    Publisher Humana Press
    Publishing place Totowa, NJ
    Publishing country United States
    Document type Book
    HBZ-ID HT008278029
    ISBN 0-89603-356-2 ; 978-0-89603-356-6
    Database Catalogue ZB MED Medicine, Health

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  7. Book: DNA damage and repair / 2

    Nickoloff, Jac A.

    (Contemporary cancer research ; [2])

    1998  

    Author's details ed. by Jac A. Nickoloff
    Series title Contemporary cancer research ; [2]
    DNA damage and repair
    Collection DNA damage and repair
    Language English
    Size XIII, 639 S. : Ill., graph. Darst.
    Publisher Humana Press
    Publishing place Totowa, NJ
    Publishing country United States
    Document type Book
    HBZ-ID HT009223664
    ISBN 0-89603-500-X ; 978-0-89603-500-3
    Database Catalogue ZB MED Medicine, Health

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  8. Book: Electroporation protocols for microorganisms

    Nickoloff, Jac A.

    (Methods in molecular biology ; 47)

    1995  

    Author's details ed. by Jac A. Nickoloff
    Series title Methods in molecular biology ; 47
    Collection
    Keywords Electroporation / methods ; Genetics, Microbial / methods ; Mikroorganismus ; Elektroporation
    Subject Elektropermeation ; Elektrische Permeabilisierung ; Keim ; Mikrobe ; Mikroben
    Language English
    Size XIX, 372 S. : Ill., graph. Darst.
    Publisher Humana Press
    Publishing place Totowa, NJ
    Publishing country United States
    Document type Book
    HBZ-ID HT006776636
    ISBN 0-89603-310-4 ; 978-0-89603-310-8
    Database Catalogue ZB MED Medicine, Health

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  9. Book: Animal cell electroporation and electrofusion protocols

    Nickoloff, Jac A.

    (Methods in molecular biology ; 48)

    1995  

    Author's details ed. by Jac A. Nickoloff
    Series title Methods in molecular biology ; 48
    Collection
    Keywords Electroporation ; Cell Fusion ; Cytology ; Biotechnology ; Tierzelle ; Elektroporation ; Elektrofusion
    Subject Elektrische Zellfusion ; Tiere ; Elektropermeation ; Elektrische Permeabilisierung
    Language English
    Size XX, 369 S. : Ill., graph. Darst.
    Publisher Humana Press
    Publishing place Totowa, NJ
    Publishing country United States
    Document type Book
    HBZ-ID HT006777259
    ISBN 0-89603-304-X ; 978-0-89603-304-7
    Database Catalogue ZB MED Medicine, Health

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  10. Book: Plant cell electroporation and electrofusion protocols

    Nickoloff, Jac A.

    (Methods in molecular biology ; 55)

    1995  

    Title variant Plant cell electroporation & electrofusion protocols
    Author's details ed. by Jac A. Nickoloff
    Series title Methods in molecular biology ; 55
    Collection
    Keywords Genetic Engineering ; Electroporation ; Cell Fusion ; Plants / cytology ; Pflanzenzelle ; Elektroporation ; Elektrofusion
    Subject Elektrische Zellfusion ; Pflanzen ; Elektropermeation ; Elektrische Permeabilisierung
    Language English
    Size XIV, 205 S. : Ill., graph. Darst.
    Publisher Humana Press
    Publishing place Totowa, NJ
    Publishing country United States
    Document type Book
    HBZ-ID HT006822606
    ISBN 0-89603-328-7 ; 978-0-89603-328-3
    Database Catalogue ZB MED Medicine, Health

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