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  1. Article ; Online: Seasonal development of a tidal mixing front drives shifts in community structure and diversity of bacterioplankton.

    King, Nathan G / Wilmes, Sophie-B / Browett, Samuel S / Healey, Amy / McDevitt, Allan D / McKeown, Niall J / Roche, Ronan / Skujina, Ilze / Smale, Dan A / Thorpe, Jamie M / Malham, Shelagh

    Molecular ecology

    2023  Volume 32, Issue 18, Page(s) 5201–5210

    Abstract: Bacterioplankton underpin biogeochemical cycles and an improved understanding of the patterns and drivers of variability in their distribution is needed to determine their wider functioning and importance. Sharp environmental gradients and dispersal ... ...

    Abstract Bacterioplankton underpin biogeochemical cycles and an improved understanding of the patterns and drivers of variability in their distribution is needed to determine their wider functioning and importance. Sharp environmental gradients and dispersal barriers associated with ocean fronts are emerging as key determinants of bacterioplankton biodiversity patterns. We examined how the development of the Celtic Sea Front (CF), a tidal mixing front on the Northwest European Shelf affects bacterioplankton communities. We performed 16S-rRNA metabarcoding on 60 seawater samples collected from three depths (surface, 20 m and seafloor), across two research cruises (May and September 2018), encompassing the intra-annual range of the CF intensity. Communities above the thermocline of stratified frontal waters were clearly differentiated and less diverse than those below the thermocline and communities in the well-mixed waters of the Irish Sea. This effect was much more pronounced in September, when the CF was at its peak intensity. The stratified zone likely represents a stressful environment for bacterioplankton due to a combination of high temperatures and low nutrients, which fewer taxa can tolerate. Much of the observed variation was driven by Synechococcus spp. (cyanobacteria), which were more abundant within the stratified zone and are known to thrive in warm oligotrophic waters. Synechococcus spp. are key contributors to global primary productivity and carbon cycling and, as such, variability driven by the CF is likely to influence regional biogeochemical processes. However, further studies are required to explicitly link shifts in community structure to function and quantify their wider importance to pelagic ecosystems.
    MeSH term(s) Ecosystem ; Seasons ; Aquatic Organisms ; Biodiversity ; Seawater/microbiology ; RNA, Ribosomal, 16S/genetics
    Chemical Substances RNA, Ribosomal, 16S
    Language English
    Publishing date 2023-08-09
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 1126687-9
    ISSN 1365-294X ; 0962-1083
    ISSN (online) 1365-294X
    ISSN 0962-1083
    DOI 10.1111/mec.17097
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Ecological and Genetic Monitoring of a Recently Established Osprey (Pandion haliaetus) Population in Wales

    Skujina, Ilze / Ougham, Helen / Evans, Emyr / Monti, Flavio / Kalvāns, Aigars / Cross, Tony / Macarie, Nicolae Adrian / Hegarty, Matthew / Shaw, Paul W. / McKeown, Niall J.

    Journal of raptor research. 2021 Nov. 9, v. 55, no. 4

    2021  

    Abstract: The Osprey (Pandion haliaetus) experienced severe declines in Europe over the past centuries, including extirpations from large parts of its range. After Ospreys began naturally recolonizing Wales, United Kingdom (UK), in 2004, the Dyfi Osprey Project ... ...

    Title translation Seguimiento Ecológico y Genético de Una Población Recientemente Establecida de Pandion haliaetus en Gales, Reino Unido
    Abstract The Osprey (Pandion haliaetus) experienced severe declines in Europe over the past centuries, including extirpations from large parts of its range. After Ospreys began naturally recolonizing Wales, United Kingdom (UK), in 2004, the Dyfi Osprey Project initiated an extensive ecological (ringing, satellite tracking, and nest video recordings) and genetic (microsatellite genotyping) monitoring program alongside artificial nest platform construction. From 2004 to 2019 there were 40 reproductive events (i.e., eggs laid in a nest) across six nests, resulting in a total of 95 fledglings and a yearly average of 2.35 ± 0.8 (SD) fledglings per nest-with-eggs. Video recording at one nest documented high hatching success and survival to the fledging and dispersal phases, as well as mate- and nest-fidelity across multiple years. Collectively these breeding parameters suggest high productivity associated with artificial nest structures and limited density-dependent effects for the Welsh population due to its small size and low density at this stage of recovery. Satellite tracking of four migrating individuals revealed that Ospreys used a western European migratory flyway and wintered in sub-Saharan western Africa. Genetic analysis of nestlings from five nests indicated single paternity in all cases, in agreement with evidence of social monogamy. Genetic analysis of geographical outgroups (Scottish, Swedish, and Latvian) provided preliminary evidence of cryptic population structure among UK (Welsh and Scottish) populations. The novel combination of loci show Welsh Osprey retain high levels of variation and more broadly direct reconsideration of the hitherto inferred genetic poverty of the species compared to other raptors. We recommend implementation of similar long-term ecological and genetic monitoring programs for other populations.
    Keywords Pandion haliaetus ; birds of prey ; genetic analysis ; genotyping ; microsatellite repeats ; migratory behavior ; monogamy ; nests ; paternity ; population structure ; poverty ; satellites ; Wales ; Western Africa
    Language English
    Dates of publication 2021-1109
    Size p. 635-643.
    Publishing place Raptor Research Foundation
    Document type Article
    ZDB-ID 2458104-5
    ISSN 0892-1016
    ISSN 0892-1016
    DOI 10.3356/JRR-20-87
    Database NAL-Catalogue (AGRICOLA)

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  3. Article ; Online: Seasonal development of a tidal mixing front drives shifts in community structure and diversity of bacterioplankton

    King, Nathan G. / Wilmes, Sophie‐B / Browett, Samuel S. / Healey, Amy / McDevitt, Allan D. / McKeown, Niall J. / Roche, Ronan / Skujina, Ilze / Smale, Dan A. / Thorpe, Jamie M. / Malham, Shelagh

    Molecular Ecology. 2023 Sept., v. 32, no. 18 p.5201-5210

    2023  

    Abstract: Bacterioplankton underpin biogeochemical cycles and an improved understanding of the patterns and drivers of variability in their distribution is needed to determine their wider functioning and importance. Sharp environmental gradients and dispersal ... ...

    Abstract Bacterioplankton underpin biogeochemical cycles and an improved understanding of the patterns and drivers of variability in their distribution is needed to determine their wider functioning and importance. Sharp environmental gradients and dispersal barriers associated with ocean fronts are emerging as key determinants of bacterioplankton biodiversity patterns. We examined how the development of the Celtic Sea Front (CF), a tidal mixing front on the Northwest European Shelf affects bacterioplankton communities. We performed 16S‐rRNA metabarcoding on 60 seawater samples collected from three depths (surface, 20 m and seafloor), across two research cruises (May and September 2018), encompassing the intra‐annual range of the CF intensity. Communities above the thermocline of stratified frontal waters were clearly differentiated and less diverse than those below the thermocline and communities in the well‐mixed waters of the Irish Sea. This effect was much more pronounced in September, when the CF was at its peak intensity. The stratified zone likely represents a stressful environment for bacterioplankton due to a combination of high temperatures and low nutrients, which fewer taxa can tolerate. Much of the observed variation was driven by Synechococcus spp. (cyanobacteria), which were more abundant within the stratified zone and are known to thrive in warm oligotrophic waters. Synechococcus spp. are key contributors to global primary productivity and carbon cycling and, as such, variability driven by the CF is likely to influence regional biogeochemical processes. However, further studies are required to explicitly link shifts in community structure to function and quantify their wider importance to pelagic ecosystems.
    Keywords DNA barcoding ; Synechococcus ; bacterioplankton ; biodiversity ; carbon ; community structure ; primary productivity ; seasonal development ; seawater ; Irish Sea
    Language English
    Dates of publication 2023-09
    Size p. 5201-5210.
    Publishing place John Wiley & Sons, Ltd
    Document type Article ; Online
    Note JOURNAL ARTICLE
    ZDB-ID 1126687-9
    ISSN 1365-294X ; 0962-1083
    ISSN (online) 1365-294X
    ISSN 0962-1083
    DOI 10.1111/mec.17097
    Database NAL-Catalogue (AGRICOLA)

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  4. Article ; Online: Deep phylogeographic structure may indicate cryptic species within the Sparid genus Spondyliosoma.

    McKeown, Niall J / Gwilliam, Michael P / Healey, Amy J E / Skujina, Ilze / Potts, Warren M / Sauer, Warwick H H / Shaw, Paul W

    Journal of fish biology

    2020  Volume 96, Issue 6, Page(s) 1434–1443

    Abstract: Two geographically nonoverlapping species are currently described within the sparid genus Spondyliosoma: Spondyliosoma cantharus (Black Seabream) occurring across Mediterranean and eastern Atlantic waters from NW Europe to Angola and S. emarginatum ( ... ...

    Abstract Two geographically nonoverlapping species are currently described within the sparid genus Spondyliosoma: Spondyliosoma cantharus (Black Seabream) occurring across Mediterranean and eastern Atlantic waters from NW Europe to Angola and S. emarginatum (Steentjie) considered endemic to southern Africa. To address prominent knowledge gaps this study investigated range-wide phylogeographic structure across both species. Mitochondrial DNA sequences revealed deep phylogeographic structuring with four regionally partitioned reciprocally monophyletic clades, a Mediterranean clade and three more closely related Atlantic clades [NE Atlantic, Angola and South Africa (corresponding to S. emarginatum)]. Divergence and distribution of the lineages reflects survival in, and expansion from, disjunct glacial refuge areas. Cytonuclear differentiation of S. emarginatum supports its validity as a distinct species endemic to South African waters. However, the results also indicate that S. cantharus may be a cryptic species complex wherein the various regional lineages represent established/incipient species. A robust multilocus genetic assessment combining morphological data and detailing interactions among lineages is needed to determine the full diversity within Spondyliosoma and the most adequate biological and taxonomic status.
    MeSH term(s) Africa ; Animals ; Atlantic Ocean ; DNA, Mitochondrial/genetics ; Europe ; Genetic Variation ; Haplotypes ; Mediterranean Sea ; Perciformes/classification ; Perciformes/genetics ; Phylogeny ; Phylogeography ; Sequence Analysis, DNA ; Species Specificity
    Chemical Substances DNA, Mitochondrial
    Language English
    Publishing date 2020-04-02
    Publishing country England
    Document type Journal Article
    ZDB-ID 410564-3
    ISSN 1095-8649 ; 0022-1112
    ISSN (online) 1095-8649
    ISSN 0022-1112
    DOI 10.1111/jfb.14316
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Genetic analysis provides insights into species distribution and population structure in East Atlantic horse mackerel (Trachurus trachurus and T. capensis).

    Healey, Amy J E / Farthing, Matthew W / Nunoo, Francis K E / Potts, Warren M / Sauer, Warwick H H / Skujina, Ilze / King, Nathan / de Becquevort, Sophie / Shaw, Paul W / McKeown, Niall J

    Journal of fish biology

    2020  Volume 96, Issue 3, Page(s) 795–805

    Abstract: Two sister species of horse mackerel (Trachurus trachurus and T. capensis) are described that are intensively harvested in East Atlantic waters. To address long-standing uncertainties as to their respective geographical ranges, overlap and intraspecific ... ...

    Abstract Two sister species of horse mackerel (Trachurus trachurus and T. capensis) are described that are intensively harvested in East Atlantic waters. To address long-standing uncertainties as to their respective geographical ranges, overlap and intraspecific population structure this study combined genetic (mitochondrial DNA and microsatellite) analysis and targeted sampling of the hitherto understudied West African coast. mtDNA revealed two reciprocally monophyletic clades corresponding to each species with interspecies nuclear differentiation supported by F
    MeSH term(s) Africa, Southern ; Animals ; DNA, Mitochondrial/genetics ; Demography ; Gene Flow ; Genetics, Population ; Microsatellite Repeats/genetics ; Perciformes/classification ; Perciformes/genetics
    Chemical Substances DNA, Mitochondrial
    Language English
    Publishing date 2020-02-20
    Publishing country England
    Document type Journal Article
    ZDB-ID 410564-3
    ISSN 1095-8649 ; 0022-1112
    ISSN (online) 1095-8649
    ISSN 0022-1112
    DOI 10.1111/jfb.14276
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Detecting genetic regions associated with height in the native ponies of the British Isles by using high density SNP genotyping.

    Skujina, Ilze / Winton, Clare L / Hegarty, Matthew J / McMahon, Robert / Nash, Deborah M / Davies Morel, Mina C G / McEwan, Neil R

    Genome

    2018  Volume 61, Issue 10, Page(s) 767–770

    Abstract: Height is an important characteristic in the equine industry although little is known about its genetic control in native British breeds of ponies. This study aimed to map QTL data with the withers height in four pony breeds native to the British Isles, ... ...

    Abstract Height is an important characteristic in the equine industry although little is known about its genetic control in native British breeds of ponies. This study aimed to map QTL data with the withers height in four pony breeds native to the British Isles, including two different sections within Welsh Cobs. In this study, a genome-wide analysis approach using the Illumina EquineSNP50 Infinium BeadChip was applied to 105 ponies and cobs. Analysis identified 222 highly significant height-associated SNPs (P ≤ 10
    MeSH term(s) Animals ; Biometry ; Breeding ; Chromosome Mapping ; Chromosomes, Mammalian/genetics ; Genotyping Techniques/methods ; High-Throughput Nucleotide Sequencing ; Horses/anatomy & histology ; Horses/genetics ; Polymorphism, Single Nucleotide ; Quantitative Trait Loci ; Whole Genome Sequencing/methods
    Language English
    Publishing date 2018-09-05
    Publishing country Canada
    Document type Journal Article
    ZDB-ID 639031-6
    ISSN 1480-3321 ; 0831-2796
    ISSN (online) 1480-3321
    ISSN 0831-2796
    DOI 10.1139/gen-2018-0006
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: Discovery of the parasite Marteilia cocosarum sp. nov. In common cockle (Cerastoderma edule) fisheries in Wales, UK and its comparison with Marteilia cochillia

    Skujina, Ilze / Hooper, Chantelle / Bass, David / Feist, Stephen W. / Bateman, Kelly S / Villalba, Antonio / Carballal, María J. / Iglesias, David / Cao, Asunción / Ward, Georgia M. / Ryder, David R.G. / Bignell, John P. / Kerr, Rose / Ross, Stuart / Hazelgrove, Richard / Macarie, Nicolae A. / Prentice, Melanie / King, Nathan / Thorpe, Jamie /
    Malham, Shelagh K. / McKeown, Niall J. / Ironside, Joseph E.

    Journal of invertebrate pathology. 2022 July, v. 192

    2022  

    Abstract: Diseases of bivalve molluscs caused by paramyxid parasites of the genus Marteilia have been linked to mass mortalities and the collapse of commercially important shellfish populations. Until recently, no Marteilia spp. have been detected in common cockle ...

    Abstract Diseases of bivalve molluscs caused by paramyxid parasites of the genus Marteilia have been linked to mass mortalities and the collapse of commercially important shellfish populations. Until recently, no Marteilia spp. have been detected in common cockle (Cerastoderma edule) populations in the British Isles. Molecular screening of cockles from ten sites on the Welsh coast indicates that a Marteilia parasite is widespread in Welsh C. edule populations, including major fisheries. Phylogenetic analysis of ribosomal DNA (rDNA) gene sequences from this parasite indicates that it is a closely related but different species to Marteilia cochillia, a parasite linked to mass mortality of C. edule fisheries in Spain, and that both are related to Marteilia octospora, for which we provide new rDNA sequence data. Preliminary light and transmission electron microscope (TEM) observations support this conclusion, indicating that the parasite from Wales is located primarily within areas of inflammation in the gills and the connective tissue of the digestive gland, whereas M. cochillia is found mainly within the epithelium of the digestive gland. The impact of infection by the new species, here described as Marteilia cocosarum n. sp., upon Welsh fisheries is currently unknown.
    Keywords Cerastoderma edule ; Marteilia ; coasts ; epithelium ; genes ; inflammation ; mortality ; new species ; nucleotide sequences ; parasites ; phylogeny ; ribosomal DNA ; shellfish ; transmission electron microscopes ; Spain ; Wales
    Language English
    Dates of publication 2022-07
    Publishing place Elsevier Inc.
    Document type Article
    ZDB-ID 390885-9
    ISSN 1096-0805 ; 0022-2011
    ISSN (online) 1096-0805
    ISSN 0022-2011
    DOI 10.1016/j.jip.2022.107786
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  8. Article ; Online: Discovery of the parasite Marteilia cocosarum sp. nov. In common cockle (Cerastoderma edule) fisheries in Wales, UK and its comparison with Marteilia cochillia.

    Skujina, Ilze / Hooper, Chantelle / Bass, David / Feist, Stephen W / Bateman, Kelly S / Villalba, Antonio / Carballal, María J / Iglesias, David / Cao, Asunción / Ward, Georgia M / Ryder, David R G / Bignell, John P / Kerr, Rose / Ross, Stuart / Hazelgrove, Richard / Macarie, Nicolae A / Prentice, Melanie / King, Nathan / Thorpe, Jamie /
    Malham, Shelagh K / McKeown, Niall J / Ironside, Joseph E

    Journal of invertebrate pathology

    2022  Volume 192, Page(s) 107786

    Abstract: Diseases of bivalve molluscs caused by paramyxid parasites of the genus Marteilia have been linked to mass mortalities and the collapse of commercially important shellfish populations. Until recently, no Marteilia spp. have been detected in common cockle ...

    Abstract Diseases of bivalve molluscs caused by paramyxid parasites of the genus Marteilia have been linked to mass mortalities and the collapse of commercially important shellfish populations. Until recently, no Marteilia spp. have been detected in common cockle (Cerastoderma edule) populations in the British Isles. Molecular screening of cockles from ten sites on the Welsh coast indicates that a Marteilia parasite is widespread in Welsh C. edule populations, including major fisheries. Phylogenetic analysis of ribosomal DNA (rDNA) gene sequences from this parasite indicates that it is a closely related but different species to Marteilia cochillia, a parasite linked to mass mortality of C. edule fisheries in Spain, and that both are related to Marteilia octospora, for which we provide new rDNA sequence data. Preliminary light and transmission electron microscope (TEM) observations support this conclusion, indicating that the parasite from Wales is located primarily within areas of inflammation in the gills and the connective tissue of the digestive gland, whereas M. cochillia is found mainly within the epithelium of the digestive gland. The impact of infection by the new species, here described as Marteilia cocosarum n. sp., upon Welsh fisheries is currently unknown.
    MeSH term(s) Animals ; Bivalvia/parasitology ; Cardiidae/parasitology ; DNA, Ribosomal ; Fisheries ; Parasites ; Phylogeny ; Wales
    Chemical Substances DNA, Ribosomal
    Language English
    Publishing date 2022-06-11
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 390885-9
    ISSN 1096-0805 ; 0022-2011
    ISSN (online) 1096-0805
    ISSN 0022-2011
    DOI 10.1016/j.jip.2022.107786
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: The complete mitochondrial genome of record-breaking migrant Arctic tern

    Skujina, Ilze / Healey, Amy Jane Elizabeth / de Becquevort, Sophie / Shaw, Paul William / McMahon, Robert / Morgan, Charly / Evans, Caron / Taylor, Rachel / Hegarty, Matthew / McKeown, Niall Joseph

    Mitochondrial DNA. Part B, Resources

    2019  Volume 4, Issue 2, Page(s) 2738–2739

    Abstract: The analysis of mitochondrial DNA (mtDNA) base composition, codon usage, and genome arrangement patterns can provide insight into metabolic pathways and evolutionary history. Here, we report on the complete mitochondrial genome (mitogenome) of Arctic ... ...

    Abstract The analysis of mitochondrial DNA (mtDNA) base composition, codon usage, and genome arrangement patterns can provide insight into metabolic pathways and evolutionary history. Here, we report on the complete mitochondrial genome (mitogenome) of Arctic tern (
    Language English
    Publishing date 2019-07-22
    Publishing country England
    Document type Journal Article
    ISSN 2380-2359
    ISSN (online) 2380-2359
    DOI 10.1080/23802359.2019.1644225
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  10. Article ; Online: Duplication of the mitochondrial control region is associated with increased longevity in birds.

    Skujina, Ilze / McMahon, Robert / Lenis, Vasileios Panagiotis / Gkoutos, Georgios V / Hegarty, Matthew

    Aging

    2016  Volume 8, Issue 8, Page(s) 1781–1789

    Abstract: Despite a number of biochemical and lifestyle differences which should increase risk of oxidative damage to their mitochondrial DNA (mtDNA) and thus reduce expected lifespan, avian species often display longer lifespans than mammals of similar body mass. ...

    Abstract Despite a number of biochemical and lifestyle differences which should increase risk of oxidative damage to their mitochondrial DNA (mtDNA) and thus reduce expected lifespan, avian species often display longer lifespans than mammals of similar body mass. Recent work in mammalian ageing has demonstrated that functional mitochondrial copy number declines with age. We noted that several bird species display duplication of the control region (CR) of the mtDNA to form a pseudo-control region (YCR), apparently an avian-specific phenomenon. To investigate whether the presence of this duplication may play a similar role in longevity to mitochondrial copy number in mammals, we correlated body mass and longevity in 92 avian families and demonstrate a significant association. Furthermore, outlier analysis demonstrated a significant (p=0.01) difference associated with presence of the YCR duplication in longer-lived avian species. Further research is required to determine if the YCR does indeed alter mitochondrial function or resilience to oxidative damage, but these findings provide an intriguing hint of how mitochondrial sequences may be related to an extended lifespan.
    MeSH term(s) Aging/genetics ; Aging/metabolism ; Animals ; Birds ; DNA, Mitochondrial/genetics ; DNA, Mitochondrial/metabolism ; Longevity/genetics ; Mitochondria/genetics ; Mitochondria/metabolism ; Oxidation-Reduction
    Chemical Substances DNA, Mitochondrial
    Language English
    Publishing date 2016-08-19
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 1945-4589
    ISSN (online) 1945-4589
    DOI 10.18632/aging.101012
    Database MEDical Literature Analysis and Retrieval System OnLINE

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