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Article ; Online: MCPH1 is essential for cellular adaptation to the G

Arroyo, María / Kuriyama, Ryoko / Guerrero, Israel / Keifenheim, Daniel / Cañuelo, Ana / Calahorra, Jesús / Sánchez, Antonio / Clarke, Duncan J / Marchal, J Alberto

FASEB journal : official publication of the Federation of American Societies for Experimental Biology

2019 Volume 33, Issue 7, Page(s) 8363–8374

Abstract: ... checkpoint, a less-understood G ...

Abstract	Cellular checkpoints controlling entry into mitosis monitor the integrity of the DNA and delay mitosis onset until the alteration is fully repaired. However, this canonical response can weaken, leading to a spontaneous bypass of the checkpoint, a process referred to as checkpoint adaptation. Here, we have investigated the contribution of microcephalin 1 (MCPH1), mutated in primary microcephaly, to the decatenation checkpoint, a less-understood G
MeSH term(s)	Ataxia Telangiectasia Mutated Proteins/genetics ; Ataxia Telangiectasia Mutated Proteins/metabolism ; Cell Cycle Proteins/genetics ; Cell Cycle Proteins/metabolism ; Cell Line, Transformed ; Cytoskeletal Proteins/genetics ; Cytoskeletal Proteins/metabolism ; G2 Phase Cell Cycle Checkpoints ; Humans
Chemical Substances	Cell Cycle Proteins ; Cytoskeletal Proteins ; MCPH1 protein, human ; ATM protein, human (EC 2.7.11.1) ; Ataxia Telangiectasia Mutated Proteins (EC 2.7.11.1)
Language	English
Publishing date	2019-04-09
Publishing country	United States
Document type	Journal Article ; Research Support, N.I.H., Extramural ; Research Support, U.S. Gov't, Non-P.H.S.
ZDB-ID	639186-2
ISSN	1530-6860 ; 0892-6638
ISSN (online)	1530-6860
ISSN	0892-6638
DOI	10.1096/fj.201802009RR
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Article ; Online: ASP-G: an ASP-based method for finding attractors in genetic regulatory networks.

Mushthofa, Mushthofa / Torres, Gustavo / Van de Peer, Yves / Marchal, Kathleen / De Cock, Martine

Bioinformatics (Oxford, England)

2014 Volume 30, Issue 21, Page(s) 3086–3092

Abstract: ... To allow for a more flexible simulation framework, we developed ASP-G. We show the correctness of ASP-G ... which a certain conclusion holds. The main added value of ASP-G is in its modularity and declarativity, making ... it more flexible and less error-prone than traditional approaches. The declarative nature of ASP-G comes ...

Abstract	Motivation: Boolean network models are suitable to simulate GRNs in the absence of detailed kinetic information. However, reducing the biological reality implies making assumptions on how genes interact (interaction rules) and how their state is updated during the simulation (update scheme). The exact choice of the assumptions largely determines the outcome of the simulations. In most cases, however, the biologically correct assumptions are unknown. An ideal simulation thus implies testing different rules and schemes to determine those that best capture an observed biological phenomenon. This is not trivial because most current methods to simulate Boolean network models of GRNs and to compute their attractors impose specific assumptions that cannot be easily altered, as they are built into the system. Results: To allow for a more flexible simulation framework, we developed ASP-G. We show the correctness of ASP-G in simulating Boolean network models and obtaining attractors under different assumptions by successfully recapitulating the detection of attractors of previously published studies. We also provide an example of how performing simulation of network models under different settings help determine the assumptions under which a certain conclusion holds. The main added value of ASP-G is in its modularity and declarativity, making it more flexible and less error-prone than traditional approaches. The declarative nature of ASP-G comes at the expense of being slower than the more dedicated systems but still achieves a good efficiency with respect to computational time. Availability and implementation: The source code of ASP-G is available at http://bioinformatics.intec.ugent.be/kmarchal/Supplementary_Information_Musthofa_2014/asp-g.zip.
MeSH term(s)	Algorithms ; Computational Biology/methods ; Gene Regulatory Networks
Language	English
Publishing date	2014-07-15
Publishing country	England
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	1422668-6
ISSN	1367-4811 ; 1367-4803
ISSN (online)	1367-4811
ISSN	1367-4803
DOI	10.1093/bioinformatics/btu481
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Article: Influence of the gas atmosphere during the synthesis of g-C3N4 for enhanced photocatalytic H2 production from water on Au/g-C3N4 composites

Jiménez-Calvo, Pablo / Marchal, Clément / Cottineau, Thomas / Caps, Valérie / Keller, Valérie

Journal of materials chemistry A. 2019 June 18, v. 7, no. 24

2019

Abstract: The design of Au/g-C3N4 nanocomposites for enhanced H2 production from water under solar and ... visible light irradiation is presented by varying the g-C3N4 synthesis atmosphere (air, N2, H2, Ar and NH3 ... We showed for the first time that the synthesis of g-C3N4 in a pure NH3 atmosphere led to enhanced ...

Abstract	The design of Au/g-C3N4 nanocomposites for enhanced H2 production from water under solar and visible light irradiation is presented by varying the g-C3N4 synthesis atmosphere (air, N2, H2, Ar and NH3). We showed for the first time that the synthesis of g-C3N4 in a pure NH3 atmosphere led to enhanced photocatalytic performances between 3 and 9 times higher than g-C3N4 prepared in other gas atmospheres. The resulting, novel 0.3 wt% Au/g-C3N4–NH3 photocatalyst produced up to 324 μmol h−1 gcat−1 and 26 μmol h−1 gcat−1 of H2 corresponding to internal quantum yields of 1.85 and 0.60% under solar and visible light irradiation respectively, with an unusually low amount of triethanolamine used as the sacrificial agent (1 vol%). This enhanced activity was correlated to the structural, optical, porosity, and surface properties of g-C3N4, and to the quality of the interface with Au NPs. From an in-depth structure–activity correlation study, we highlighted the combined effects of a higher surface area with larger contribution of mesoporous volume, higher crystallization degree of g-C3N4–NH3 and lower deformation of nanosheets. Additionally, the ratio between tri-s-triazine and s-triazine based C3N4 was determined and used for the first time to point out the effect of different continuous gas flow atmospheres during synthesis. Furthermore, the suitable surface chemistry of g-C3N4–NH3 allowed more homogeneous coverage with small Au NPs yielding more intimate contact and higher quality of the interface between Au NPs and the g-C3N4 support.
Keywords	air ; ammonia ; carbon nitride ; crystallization ; deformation ; hydrogen ; hydrogen production ; irradiation ; light ; nanocomposites ; nanogold ; nanosheets ; nitrogen ; photocatalysis ; photocatalysts ; porosity ; porous media ; surface area
Language	English
Dates of publication	2019-0618
Size	p. 14849-14863.
Publishing place	The Royal Society of Chemistry
Document type	Article
ZDB-ID	2702232-8
ISSN	2050-7496 ; 2050-7488
ISSN (online)	2050-7496
ISSN	2050-7488
DOI	10.1039/c9ta01734h
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Article ; Online: Can BRET-based biosensors be used to characterize G-protein mediated signaling pathways of an insect GPCR, the Schistocerca gregaria CRF-related diuretic hormone receptor?

Lismont, Els / Verbakel, Lina / Vogel, Elise / Corbisier, Jenny / Degroot, Gaetan-Nagim / Verdonck, Rik / Verlinden, Heleen / Marchal, Elisabeth / Springael, Jean-Yves / Vanden Broeck, Jozef

Insect biochemistry and molecular biology

2020 Volume 122, Page(s) 103392

Abstract: G protein-coupled receptors (GPCRs) are membrane-bound receptors that are considered prime ...

Abstract	G protein-coupled receptors (GPCRs) are membrane-bound receptors that are considered prime candidates for the development of novel insect pest management strategies. However, the molecular signaling properties of insect GPCRs remain poorly understood. In fact, most studies on insect GPCR signaling are limited to analysis of fluctuations in the secondary messenger molecules calcium (Ca
MeSH term(s)	Amino Acid Sequence ; Animals ; Biosensing Techniques/instrumentation ; GTP-Binding Proteins/genetics ; GTP-Binding Proteins/metabolism ; Insect Hormones/metabolism ; Insect Proteins/chemistry ; Insect Proteins/genetics ; Insect Proteins/metabolism ; Luminescent Measurements ; Moths/genetics ; Moths/physiology ; Receptors, G-Protein-Coupled/chemistry ; Receptors, G-Protein-Coupled/genetics ; Receptors, G-Protein-Coupled/metabolism ; Sequence Alignment ; Signal Transduction
Chemical Substances	Insect Hormones ; Insect Proteins ; Receptors, G-Protein-Coupled ; GTP-Binding Proteins (EC 3.6.1.-)
Language	English
Publishing date	2020-05-05
Publishing country	England
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	1483248-3
ISSN	1879-0240 ; 0965-1748
ISSN (online)	1879-0240
ISSN	0965-1748
DOI	10.1016/j.ibmb.2020.103392
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Article ; Online: Follicle stimulating hormone receptor G-29A, 919A>G, 2039A>G polymorphism and the risk of male infertility: a meta-analysis.

Wu, Wei / Cai, Hongquan / Sun, Hong / Lu, Jing / Zhao, Dan / Qin, Yufeng / Han, Xiumei / Niu, Xiaobing / Lu, Chuncheng / Xia, Yankai / Wang, Shoulin / De Moor, Bart / Marchal, Kathleen / Wang, Xinru

Gene

2012 Volume 505, Issue 2, Page(s) 388–392

Abstract: Studies of the relationship between male infertility and polymorphisms in the regions of FSHR G-29A ... rs1394205), 919A>G (Thr(307)Ala, rs6165) and 2039A>G (Asn(680)Ser, rs6166) have reported inconsistent ... The pooled ORs were performed for co-dominant model, dominant model and recessive model in FSHR G-29A, Thr ...

Abstract	Studies of the relationship between male infertility and polymorphisms in the regions of FSHR G-29A (rs1394205), 919A>G (Thr(307)Ala, rs6165) and 2039A>G (Asn(680)Ser, rs6166) have reported inconsistent results. To assess the association between them, a meta-analysis was conducted. PubMed and CBMdisc literature search were conducted to identify all eligible studies investigating such a relationship. The pooled ORs were performed for co-dominant model, dominant model and recessive model in FSHR G-29A, Thr(307)Ala and Asn(680)Ser respectively to assess the strength of association. A total of 1644 male infertility cases and 1748 controls were collected from seven case-control studies. In the overall analysis, no significant association between the three polymorphisms and risk of male infertility was observed. Stratified analysis showed that there were no significantly increased risks of azoospermia and oligoasthenoteratozoospermia (OAT) in any of the genetic models. This meta-analysis supports that FSHR G-29A, Thr(307)Ala and Asn(680)Ser polymorphisms may not be capable of causing male infertility susceptibility.
MeSH term(s)	Genetic Predisposition to Disease ; Humans ; Infertility, Male/genetics ; Male ; Polymorphism, Genetic ; Polymorphism, Single Nucleotide ; Receptors, FSH/genetics ; Risk
Chemical Substances	Receptors, FSH
Language	English
Publishing date	2012-09-01
Publishing country	Netherlands
Document type	Journal Article ; Meta-Analysis ; Research Support, Non-U.S. Gov't
ZDB-ID	391792-7
ISSN	1879-0038 ; 0378-1119
ISSN (online)	1879-0038
ISSN	0378-1119
DOI	10.1016/j.gene.2012.02.023
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Article: Can BRET-based biosensors be used to characterize G-protein mediated signaling pathways of an insect GPCR, the Schistocerca gregaria CRF-related diuretic hormone receptor?

Lismont, Els / Verbakel, Lina / Vogel, Elise / Corbisier, Jenny / Degroot, Gaetan-Nagim / Verdonck, Rik / Verlinden, Heleen / Marchal, Elisabeth / Springael, Jean-Yves / Vanden Broeck, Jozef

Insect biochemistry and molecular biology. 2020 July, v. 122

2020

Abstract: G protein-coupled receptors (GPCRs) are membrane-bound receptors that are considered prime ... based G protein biosensors, can also be used to detect direct Gα protein subunit activation by an insect ... GPCR. Therefore, we analyzed ten different human BRET-based G protein biosensors, representing members ...

Abstract	G protein-coupled receptors (GPCRs) are membrane-bound receptors that are considered prime candidates for the development of novel insect pest management strategies. However, the molecular signaling properties of insect GPCRs remain poorly understood. In fact, most studies on insect GPCR signaling are limited to analysis of fluctuations in the secondary messenger molecules calcium (Ca²⁺) and/or cyclic adenosine monophosphate (cAMP). In the current study, we characterized a corticotropin-releasing factor-related diuretic hormone (CRF-DH) receptor of the desert locust, Schistocerca gregaria. This Schgr-CRF-DHR is mainly expressed in the nervous system and in brain-associated endocrine organs. The neuropeptide Schgr-CRF-DH induced Ca²⁺-dependent aequorin-based bioluminescent responses in CHO cells co-expressing this receptor with the promiscuous Gα₁₆ protein. Furthermore, when co-expressed with the cAMP-dependent bioluminescence resonance energy transfer (BRET)-based CAMYEL biosensor in HEK293T cells, this receptor elicited dose-dependent agonist-induced responses with an EC₅₀ in the nanomolar range (4.02 nM). In addition, we tested if vertebrate BRET-based G protein biosensors, can also be used to detect direct Gα protein subunit activation by an insect GPCR. Therefore, we analyzed ten different human BRET-based G protein biosensors, representing members of all four Gα protein subfamilies; Gαₛ, Gαᵢ/ₒ, Gαq/₁₁ and Gα₁₂/₁₃. Our data demonstrate that stimulation of Schgr-CRF-DHR by Schgr-CRF-DH can dose-dependently activate Gαᵢ/ₒ and Gαₛ biosensors, while no significant effects were observed with the Gαq/₁₁ and Gα₁₂/₁₃ biosensors. Our study paves the way for future biosensor-based studies to analyze the signaling properties of insect GPCRs in both fundamental science and applied research contexts.
Keywords	G-proteins ; Schistocerca gregaria ; applied research ; bioluminescence ; biosensors ; calcium ; cyclic AMP ; diuretic hormone ; diuretic hormone receptors ; dose response ; energy transfer ; humans ; insect biochemistry ; insect control ; insects ; molecular biology ; nervous system ; neuropeptides ; protein subunits ; second messengers
Language	English
Dates of publication	2020-07
Publishing place	Elsevier Ltd
Document type	Article
Note	NAL-AP-2-clean
ZDB-ID	1483248-3
ISSN	1879-0240 ; 0965-1748
ISSN (online)	1879-0240
ISSN	0965-1748
DOI	10.1016/j.ibmb.2020.103392
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Article: Follicle stimulating hormone receptor G-29A, 919A>G, 2039A>G polymorphism and the risk of male infertility: A meta-analysis

Wu, Wei / Cai, Hongquan / Sun, Hong / Lu, Jing / Zhao, Dan / Qin, Yufeng / Han, Xiumei / Niu, Xiaobing / Lu, Chuncheng / Xia, Yankai / Wang, Shoulin / De Moor, Bart / Marchal, Kathleen / Wang, Xinru

Gene. 2012 Sept. 1, v. 505, no. 2

2012

Abstract: Studies of the relationship between male infertility and polymorphisms in the regions of FSHR G-29A ... rs1394205), 919A>G (Thr³⁰⁷Ala, rs6165) and 2039A>G (Asn⁶⁸⁰Ser, rs6166) have reported inconsistent results ... performed for co-dominant model, dominant model and recessive model in FSHR G-29A, Thr³⁰⁷Ala and Asn⁶⁸⁰Ser ...

Abstract	Studies of the relationship between male infertility and polymorphisms in the regions of FSHR G-29A (rs1394205), 919A>G (Thr³⁰⁷Ala, rs6165) and 2039A>G (Asn⁶⁸⁰Ser, rs6166) have reported inconsistent results. To assess the association between them, a meta-analysis was conducted. PubMed and CBMdisc literature search were conducted to identify all eligible studies investigating such a relationship. The pooled ORs were performed for co-dominant model, dominant model and recessive model in FSHR G-29A, Thr³⁰⁷Ala and Asn⁶⁸⁰Ser respectively to assess the strength of association. A total of 1644 male infertility cases and 1748 controls were collected from seven case–control studies. In the overall analysis, no significant association between the three polymorphisms and risk of male infertility was observed. Stratified analysis showed that there were no significantly increased risks of azoospermia and oligoasthenoteratozoospermia (OAT) in any of the genetic models. This meta-analysis supports that FSHR G-29A, Thr³⁰⁷Ala and Asn⁶⁸⁰Ser polymorphisms may not be capable of causing male infertility susceptibility.
Keywords	follicle-stimulating hormone receptors ; male fertility ; meta-analysis ; models ; risk
Language	English
Dates of publication	2012-0901
Size	p. 388-392.
Publishing place	Elsevier B.V.
Document type	Article
ZDB-ID	391792-7
ISSN	1879-0038 ; 0378-1119
ISSN (online)	1879-0038
ISSN	0378-1119
DOI	10.1016/j.gene.2012.02.023
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Article: Role of HLA-G in maternal-fetal immune tolerance.

Rouas-Freiss, N / Khalil-Daher, I / Marchal-Bras Goncalves, R / Menier, C / Dausset, J / Carosella, E D

Transplantation proceedings

1999 Volume 31, Issue 1-2, Page(s) 724–725

MeSH term(s)	Cytotoxicity, Immunologic ; Female ; Fetus/immunology ; HLA Antigens/immunology ; HLA-G Antigens ; Histocompatibility Antigens Class I/immunology ; Humans ; Immune Tolerance ; Killer Cells, Natural/immunology ; Maternal-Fetal Exchange/immunology ; Pregnancy
Chemical Substances	HLA Antigens ; HLA-G Antigens ; Histocompatibility Antigens Class I
Language	English
Publishing date	1999-02
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	82046-5
ISSN	1873-2623 ; 0041-1345
ISSN (online)	1873-2623
ISSN	0041-1345
DOI	10.1016/s0041-1345(98)01622-4
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Article ; Online: G-allele of intronic rs10830963 in MTNR1B confers increased risk of impaired fasting glycemia and type 2 diabetes through an impaired glucose-stimulated insulin release: studies involving 19,605 Europeans.

Sparsø, Thomas / Bonnefond, Amélie / Andersson, Ehm / Bouatia-Naji, Nabila / Holmkvist, Johan / Wegner, Lise / Grarup, Niels / Gjesing, Anette P / Banasik, Karina / Cavalcanti-Proença, Christine / Marchand, Marion / Vaxillaire, Martine / Charpentier, Guillaume / Jarvelin, Marjo-Riitta / Tichet, Jean / Balkau, Beverley / Marre, Michel / Lévy-Marchal, Claire / Faerch, Kristine /

Borch-Johnsen, Knut / Jørgensen, Torben / Madsbad, Sten / Poulsen, Pernille / Vaag, Allan / Dina, Christian / Hansen, Torben / Pedersen, Oluf / Froguel, Philippe

Diabetes

2009 Volume 58, Issue 6, Page(s) 1450–1456

Abstract: ... x 10(-31)) and type 2 diabetes. The rs10830963 G-allele increased the risk of i-IFG (odds ratio [OR ... 1.64, P = 5.5 x 10(-11)) but not i-IGT. The G-allele was associated with a decreased insulin release ... In elderly twins, the G-allele associated with hepatic insulin resistance (P = 0.017).: Conclusions: The G ...

Abstract	Objective: Genome-wide association studies have identified several variants within the MTNR1B locus that are associated with fasting plasma glucose (FPG) and type 2 diabetes. We refined the association signal by direct genotyping and examined for associations of the variant displaying the most independent effect on FPG with isolated impaired fasting glycemia (i-IFG), isolated impaired glucose tolerance (i-IGT), type 2 diabetes, and measures of insulin release and peripheral and hepatic insulin sensitivity. Research design and methods: We examined European-descent participants in the Inter99 study (n = 5,553), in a sample of young healthy Danes (n = 372), in Danish twins (n = 77 elderly and n = 97 young), in additional Danish type 2 diabetic patients (n = 1,626) and control subjects (n = 505), in the Data from the Epidemiological Study on the Insulin Resistance Syndrome (DESIR) study (n = 4,656), in the North Finland Birth Cohort 86 (n = 5,258), and in the Haguenau study (n = 1,461). Results: The MTNR1B intronic variant, rs10830963, carried most of the effect on FPG and showed the strongest association with FPG (combined P = 5.3 x 10(-31)) and type 2 diabetes. The rs10830963 G-allele increased the risk of i-IFG (odds ratio [OR] 1.64, P = 5.5 x 10(-11)) but not i-IGT. The G-allele was associated with a decreased insulin release after oral and intravenous glucose challenges (P < 0.01) but not after injection of tolbutamide. In elderly twins, the G-allele associated with hepatic insulin resistance (P = 0.017). Conclusions: The G-allele of MTNR1B rs10830963 increases risk of type 2 diabetes through a state of i-IFG and not through i-IGT. The same allele associates with estimates of beta-cell dysfunction and hepatic insulin resistance.
MeSH term(s)	Adult ; Aged ; Blood Glucose/genetics ; Blood Glucose/metabolism ; Denmark ; Diabetes Mellitus, Type 2/genetics ; European Continental Ancestry Group/genetics ; Genetic Variation ; Glucose/pharmacology ; Humans ; Insulin/metabolism ; Insulin Resistance/genetics ; Insulin Secretion ; Insulin-Secreting Cells/physiology ; Introns ; Liver/physiopathology ; Quantitative Trait Loci ; Receptor, Melatonin, MT1/genetics ; Risk Factors ; Twins
Chemical Substances	Blood Glucose ; Insulin ; Receptor, Melatonin, MT1 ; Glucose (IY9XDZ35W2)
Language	English
Publishing date	2009-03-26
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	80085-5
ISSN	1939-327X ; 0012-1797
ISSN (online)	1939-327X
ISSN	0012-1797
DOI	10.2337/db08-1660
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Article: A soluble HLA-G protein that inhibits natural killer cell-mediated cytotoxicity.

Marchal-Bras-Goncalves, R / Rouas-Freiss, N / Connan, F / Choppin, J / Dausset, J / Carosella, E D / Kirszenbaum, M / Guillet, J

Transplantation proceedings

2001 Volume 33, Issue 3, Page(s) 2355–2359

MeSH term(s)	Cells, Cultured ; Clone Cells ; Cloning, Molecular ; Cytotoxicity, Immunologic/drug effects ; Cytotoxicity, Immunologic/physiology ; Escherichia coli ; HLA Antigens/immunology ; HLA Antigens/pharmacology ; HLA-G Antigens ; Histocompatibility Antigens Class I/immunology ; Histocompatibility Antigens Class I/pharmacology ; Humans ; K562 Cells ; Killer Cells, Natural/drug effects ; Killer Cells, Natural/immunology ; Polymerase Chain Reaction ; Recombinant Fusion Proteins/isolation & purification ; Recombinant Fusion Proteins/pharmacology
Chemical Substances	HLA Antigens ; HLA-G Antigens ; Histocompatibility Antigens Class I ; Recombinant Fusion Proteins
Language	English
Publishing date	2001-05
Publishing country	United States
Document type	Journal Article
ZDB-ID	82046-5
ISSN	1873-2623 ; 0041-1345
ISSN (online)	1873-2623
ISSN	0041-1345
DOI	10.1016/s0041-1345(01)02020-6
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