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  1. Book ; Online ; E-Book: Targeting oncogenic drivers and signaling pathways in lymphoid malignancies

    O'Connor, Owen A. / Ansell, Stephen M. / Seymour, John

    from concept to practice

    (Precision cancer therapies ; Volume 1)

    2023  

    Abstract: ... shared with solid tumors (Sarkozy et al., 2015; Rozhok and DeGregori, 2016). In the case ...

    Author's details edited by Owen A. O'Connor, Stephen Ansell, and John Seymour
    Series title Precision cancer therapies ; Volume 1
    Abstract "If one asks a cancer scientist a seemingly naive question such as what are the hallmarks of cancer cells, he-she will probably cite at first somatic mutations and genomic rearrangement, leading to excessive proliferation, resistance to apoptosis, and dissemination potential (Hanahan and Weinberg, 2011). Intriguingly, all of these hallmarks are physiological properties of B- and T-lymphocytes, selected by evolution because they ensure an efficient immune response against pathogens. So, it is a fascinating paradox to observe that lymphoma remains a relatively rare cancer as compared to epithelial cancers. Hence, understanding the tumor suppressor mechanisms that mitigate lymphomagenesis or eradicate lymphoma cells at preclinical stages appears an extraordinary challenge. After a short overview of the current models used to analyze lymphomagenesis, we will highlight that the frontier between reactive lymphoproliferation and overt lymphoma is not always clear. Then, we will present how the classification of lymphomas based on the concept of cell of origin might reveal important phenotypical properties of lymphoma subtypes. Finally, we propose an overview of the main hallmarks of lymphomas and discuss their contribution in the most frequent subtypes of lymphomas. How to study lymphomagenesis As in other scientific fields, the nature of our knowledge of lymphomagenesis is tightly linked to the tools used to produce this knowledge. Hence, it seems interesting to start this review with a methodological perspective, providing a brief overview of the different scientific approaches which have brought major contributions to our understanding of lymphomagenesis. Epidemiology was the first approach which shed light on the mechanisms of lymphomagenesis, by deriving statistical correlations from direct observation of cohorts of patients. First, epidemiology has established the link between lymphoma incidence and aging. The incidence of most lymphomas follows an exponential growth after the fifth decade as observed for most cancers, suggesting that common processes are shared with solid tumors (Sarkozy et al., 2015; Rozhok and DeGregori, 2016). In the case of Hodgkin lymphomas, the bimodal distribution of incidence suggests that specific mechanisms are occurring in young patients, which have not been fully elucidated to date. Second, epidemiology has also proven a counter-intuitive association of lymphomas with immunosuppression, either inherited (common variable immunodepression for example) or acquired after HIV infection, or immunosuppressive drugs (van Leeuwen et al., 2009; Kaplan, 2012). This association revealed the role of the immune system in repressing the growth of transformed lymphocytes, either by active eradication of tumor cells or by exerting a competition for resources . Third, the analysis of the geographic distribution of lymphoma subtypes also shows striking differences, such as the higher incidence of T-cell lymphoma in Asia as compared to Western countries (Perry et al., 2016). These differences suggest two non-mutually exclusive hypotheses, related to environmental or genetic differences. The fourth major insight from epidemiological studies was to shed light on the role of pathogens such as Helicobacter pylori, HCV, EBV or HTLV1 in specific subtypes of lymphoma (Lecuit et al., 2004; Suarez et al., 2006; Couronné et al., 2018), which has been then confirmed experimentally. Besides pathogens, epidemiological studies have also demonstrated the role of environmental exposures such as herbicides in lymphomagenesis, which might have important consequences for health policies (Weisenburger, 2021). More recently, molecular epidemiology based on genome wide association studies have demonstrated the association of host genetic polymorphisms with the risk of specific lymphoma subtypes (Cerhan et al., 2014), highlighting unsuspected pathways which can then be experimentally explored"--
    MeSH term(s) Precision Medicine. ; Lymphoma/therapy. ; Signal Transduction.
    Keywords Cancer/Treatment
    Subject code 616.99406
    Language English
    Size 1 online resource (514 pages)
    Publisher John Wiley & Sons, Inc
    Publishing place Hoboken, New Jersey
    Document type Book ; Online ; E-Book
    Remark Zugriff für angemeldete ZB MED-Nutzerinnen und -Nutzer
    ISBN 1-119-81995-4 ; 1-119-81993-8 ; 9781119819929 ; 978-1-119-81995-0 ; 978-1-119-81993-6 ; 111981992X
    Database ZB MED Catalogue: Medicine, Health, Nutrition, Environment, Agriculture

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  2. Article ; Online: Ribosome profiling reveals downregulation of UMP biosynthesis as the major early response to phage infection.

    O'Connor, Patrick B F / Mahony, Jennifer / Casey, Eoghan / Baranov, Pavel V / van Sinderen, Douwe / Yordanova, Martina M

    Microbiology spectrum

    2024  Volume 12, Issue 4, Page(s) e0398923

    Abstract: Bacteria have evolved diverse defense mechanisms to counter bacteriophage attacks. Genetic programs activated upon infection characterize phage-host molecular interactions and ultimately determine the outcome of the infection. In this study, we applied ... ...

    Abstract Bacteria have evolved diverse defense mechanisms to counter bacteriophage attacks. Genetic programs activated upon infection characterize phage-host molecular interactions and ultimately determine the outcome of the infection. In this study, we applied ribosome profiling to monitor protein synthesis during the early stages of sk1 bacteriophage infection in
    Importance: The ribosome profiling technology has provided invaluable insights for understanding cellular translation and eukaryotic viral infections. However, its potential for investigating host-phage interactions remains largely untapped. Here, we applied ribosome profiling to
    MeSH term(s) Protein Biosynthesis ; Ribosome Profiling ; Down-Regulation ; Bacteriophages/genetics ; Bacteriophages/metabolism ; RNA, Messenger/metabolism ; Nucleotides/metabolism ; Uridine Monophosphate/metabolism ; Lactococcus
    Chemical Substances RNA, Messenger ; Nucleotides ; Uridine Monophosphate (E2OU15WN0N)
    Language English
    Publishing date 2024-03-07
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2807133-5
    ISSN 2165-0497 ; 2165-0497
    ISSN (online) 2165-0497
    ISSN 2165-0497
    DOI 10.1128/spectrum.03989-23
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Variation in radial head fracture treatment recommendations in terrible triad injuries is not influenced by viewing two-dimensional computed tomography.

    Perloff, Eric M / Crijns, Tom J / O'Connor, Casey M / Ring, David / Marinello, Patrick G

    Clinics in shoulder and elbow

    2023  Volume 26, Issue 2, Page(s) 156–161

    Abstract: ... in surgical decision making. Level of evidence: Level III, therapeutic case-control study. ...

    Abstract Background: We analyzed association between viewing two-dimensional computed tomography (2D CT) images in addition to radiographs with radial head treatment recommendations after accounting for patient and surgeon factors in a survey-based experiment.
    Methods: One hundred and fifty-four surgeons reviewed 15 patient scenarios with terrible triad fracture dislocations of the elbow. Surgeons were randomized to view either radiographs only or radiographs and 2D CT images. The scenarios randomized patient age, hand dominance, and occupation. For each scenario, surgeons were asked if they would recommend fixation or arthroplasty of the radial head. Multi-level logistic regression analysis identified variables associated with radial head treatment recommendations.
    Results: Reviewing 2D CT images in addition to radiographs had no statistical association with treatment recommendations. A higher likelihood of recommending prosthetic arthroplasty was associated with older patient age, patient occupation not requiring manual labor, surgeon practice location in the United States, practicing for five years or less, and the subspecialties "trauma" and "shoulder and elbow."
    Conclusions: The results of this study suggest that in terrible triad injuries, the imaging appearance of radial head fractures has no measurable influence on treatment recommendations. Personal surgeon factors and patient demographic characteristics may have a larger role in surgical decision making. Level of evidence: Level III, therapeutic case-control study.
    Language English
    Publishing date 2023-05-17
    Publishing country Korea (South)
    Document type Journal Article
    ZDB-ID 3031244-9
    ISSN 2288-8721 ; 2383-8337
    ISSN (online) 2288-8721
    ISSN 2383-8337
    DOI 10.5397/cise.2022.01368
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Increased Risk of Malignancy with Immunosuppression: A Population-Based Analysis of Texas Medicare Beneficiaries.

    Cicalese, Luca / Westra, Jordan R / O'Connor, Casey M / Kuo, Yong-Fang

    Cancers

    2023  Volume 15, Issue 12

    Abstract: Immunosuppressive drugs (IMD) are widely utilized to treat many autoimmune conditions and to prevent rejection in organ transplantation. Cancer has been associated with prolonged use of IMD in transplant patients. However, no detailed, systematic ... ...

    Abstract Immunosuppressive drugs (IMD) are widely utilized to treat many autoimmune conditions and to prevent rejection in organ transplantation. Cancer has been associated with prolonged use of IMD in transplant patients. However, no detailed, systematic analysis of the risk of cancer has been performed in patients receiving IMD for any condition and duration. We analyzed Medicare data from Texas Medicare beneficiaries, regardless of their age, between 2007 and 2018, from the Texas Cancer Registry. We analyzed the data for the risk of cancer after IMD use associated with demographic characteristics, clinical conditions, and subsequent cancer type. Of 29,196 patients who used IMD for a variety of indications, 5684 developed cancer. The risk of cancer (standardized incidence ratio) was particularly high for liver (9.10), skin (7.95), lymphoma (4.89), and kidney (4.39). Patients receiving IMD had a four fold greater likelihood of developing cancer than the general population. This risk was higher within the first 3 years of IMD utilization and in patients younger than 65 years and minorities. This study shows that patients receiving IMD for any indications have a significantly increased risk of cancer, even with short-term use. Caution is needed for IMD use; in addition, an aggressive neoplastic diagnostic screening is warranted.
    Language English
    Publishing date 2023-06-11
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2527080-1
    ISSN 2072-6694
    ISSN 2072-6694
    DOI 10.3390/cancers15123144
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Frailty is Associated With Increased Complication, Readmission, and Hospitalization Costs Following Primary Total Knee Arthroplasty.

    Lakra, Akshay / Tram, Michael K / Bernasek, Thomas L / Lyons, Steven T / O'Connor, Casey M

    The Journal of arthroplasty

    2023  Volume 38, Issue 7 Suppl 2, Page(s) S182–S186.e2

    Abstract: Background: Frailty has been associated with poor postoperative outcomes in various medical conditions and surgical procedures. However, the relationship between frailty and outcomes after primary total knee arthroplasty (TKA) has not been well- ... ...

    Abstract Background: Frailty has been associated with poor postoperative outcomes in various medical conditions and surgical procedures. However, the relationship between frailty and outcomes after primary total knee arthroplasty (TKA) has not been well-described. This study investigated the association of the Hospital Frailty Risk Score (HFRS) with postoperative events and hospitalization costs after primary TKA.
    Methods: Using a nationwide readmissions database, we identified 884,479 patients discharged after primary TKA for osteoarthritis between January 2017 and November 2019. HFRS was calculated for each patient to determine frailty status. We used multivariate logistic regressions to evaluate the association of frailty with 30-readmission rate and negative binomial regressions to evaluate lengths of hospital stay and hospitalization costs. The 30-day reoperation and complication rates were compared using chi-square tests.
    Results: Frailty was associated with increased odds of 30-day readmissions (odds ratio [OR]: 1.89, 95% confidence interval [CI]: 1.82-1.96), longer lengths of stay (OR: 1.43, 95% CI: 1.43-1.44), and higher hospitalization costs (OR: 1.16, 95% CI: 1.16-1.17). Frail patients also had significantly higher rates of 30-day reoperations (0.6 versus 0.4%), surgical complications (0.6 versus 0.4%), medical complications (3.4 versus 1.3%), and other complications (0.9 versus 0.5%) (P < .01).
    Conclusions: Frailty, as measured using HFRS, was associated with increased adverse events and health care burdens in patients undergoing TKA. The HFRS could be used to swiftly identify high-risk patients undergoing TKA and to potentially help optimize patients prior to elective TKA.
    Type of study: Level III retrospective cohort study.
    MeSH term(s) Humans ; Arthroplasty, Replacement, Knee/adverse effects ; Patient Readmission ; Retrospective Studies ; Frailty/complications ; Frailty/epidemiology ; Risk Factors ; Hospitalization ; Length of Stay ; Postoperative Complications/epidemiology ; Postoperative Complications/etiology
    Language English
    Publishing date 2023-02-28
    Publishing country United States
    Document type Journal Article
    ZDB-ID 632770-9
    ISSN 1532-8406 ; 0883-5403
    ISSN (online) 1532-8406
    ISSN 0883-5403
    DOI 10.1016/j.arth.2023.02.036
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Misinformation in Patient Handouts About Upper Extremity Conditions.

    O'Connor, Casey M / Kortlever, Joost / Ring, David

    Journal of patient experience

    2020  Volume 7, Issue 6, Page(s) 1331–1335

    Abstract: This study investigated handouts regarding common upper extremity problems for inaccuracies, distracting information, and concepts that reinforce common unhelpful cognitive biases. We reviewed handouts on upper extremity conditions from 2 electronic ... ...

    Abstract This study investigated handouts regarding common upper extremity problems for inaccuracies, distracting information, and concepts that reinforce common unhelpful cognitive biases. We reviewed handouts on upper extremity conditions from 2 electronic medical records and 2 professional associations. We categorized information as inaccurate, distracting, and risk of reinforcing common unhelpful cognitive biases. Reading level, quality, and the ability of patients to process and take action was also rated. We found an average rate of inaccurate statements of 1.9 per 100 words, distracting statements of 0.73 per 100 words, and statements reinforcing common unhelpful cognitive biases of 2.1 per 100 words. Handouts from electronic medical records were rated higher quality and had higher reading grade level, but on average were constructed for better understandability. Patient handouts have a notable rate of inaccuracies, distractions, and information that may reinforce less adaptive cognitions. Greater attention is merited to making patient handouts readable, understandable, hopeful, and enabling.
    Language English
    Publishing date 2020-10-16
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2857285-3
    ISSN 2374-3743 ; 2374-3735
    ISSN (online) 2374-3743
    ISSN 2374-3735
    DOI 10.1177/2374373520966823
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Isolated Intracranial Hypertension as a Presentation of Pediatric Lyme Borreliosis: A Case Report and Literature Review.

    Mah, Jeffrey M / Lo, Cody / O'Connor, Michael D

    Pediatric neurology

    2024  Volume 152, Page(s) 196–199

    Abstract: ... controversial.: Methods: Case report and literature review.: Results: A 13-year-old male presented ...

    Abstract Background: It is extremely rare for Lyme borreliosis to present solely with features of increased intracranial pressure. The treatment of pediatric Lyme neuroborreliosis with oral versus intravenous antibiotics remains controversial.
    Methods: Case report and literature review.
    Results: A 13-year-old male presented with five days of binocular diplopia, several weeks of headache, and a history of multiple tick bites six weeks prior. His examination showed a left eye abduction deficit and bilateral optic disc edema. Magnetic resonance imaging (MRI) of the brain with contrast showed tortuosity of the optic nerves, prominence of the optic nerve sheaths, and enhancement of the left fifth and bilateral sixth cranial nerves. Lumbar puncture showed an elevated opening pressure and a lymphocytic pleocytosis. Lyme IgM and IgG antibodies were positive in the serum and cerebrospinal fluid. The patient was treated with intravenous ceftriaxone for two days empirically followed by doxycycline by mouth for 19 days. Symptoms began improving after 48 hours. The strabismus resolved after two weeks, and the papilledema improved slowly with complete resolution at six months.
    Conclusions: Lyme neuroborreliosis can present as isolated intracranial hypertension in the pediatric population; it can be differentiated from idiopathic intracranial hypertension on MRI, and lumbar puncture and can be confirmed with serum antibody testing. Oral doxycycline can be considered for Lyme neuroborreliosis in children.
    MeSH term(s) Adolescent ; Humans ; Male ; Anti-Bacterial Agents/therapeutic use ; Ceftriaxone/therapeutic use ; Doxycycline/therapeutic use ; Intracranial Hypertension/drug therapy ; Intracranial Hypertension/etiology ; Lyme Disease/complications ; Lyme Disease/diagnosis ; Lyme Disease/drug therapy ; Lyme Neuroborreliosis/complications ; Lyme Neuroborreliosis/diagnosis ; Lyme Neuroborreliosis/drug therapy ; Papilledema
    Chemical Substances Anti-Bacterial Agents ; Ceftriaxone (75J73V1629) ; Doxycycline (N12000U13O)
    Language English
    Publishing date 2024-01-02
    Publishing country United States
    Document type Review ; Case Reports ; Journal Article
    ZDB-ID 639164-3
    ISSN 1873-5150 ; 0887-8994
    ISSN (online) 1873-5150
    ISSN 0887-8994
    DOI 10.1016/j.pediatrneurol.2023.12.025
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Frailty Is Associated With Increased 30-Day Adverse Events and Hospitalization Costs After Primary Total Hip Arthroplasty.

    Tram, Michael K / O'Connor, Casey M / Qian, Alex S / Tram, Jennifer T / Tetreault, Matthew W

    The Journal of arthroplasty

    2022  Volume 37, Issue 8S, Page(s) S925–S930.e4

    Abstract: Background: Frailty can predict adverse outcomes for multiple medical conditions and surgeries but is not well studied in total hip arthroplasty (THA). We evaluate the association between Hospital Frailty Risk Score and postoperative events and costs ... ...

    Abstract Background: Frailty can predict adverse outcomes for multiple medical conditions and surgeries but is not well studied in total hip arthroplasty (THA). We evaluate the association between Hospital Frailty Risk Score and postoperative events and costs after primary THA.
    Methods: Using the National Readmissions Database, we identified primary THA patients for osteoarthritis, osteonecrosis, or hip fracture from January to November 2017. Using Hospital Frailty Risk Score, we compared 30-day readmission rate, hospital course duration, and costs between frail and nonfrail patients for each diagnosis, controlling for covariates. Thirty-day complication and reoperation rates were compared using univariate analysis.
    Results: We identified 167,700 THAs for osteoarthritis, 5353 for osteonecrosis, and 7246 for hip fractures. Frail patients had increased 30-day readmission rates (5.3% vs 2.5% for osteoarthritis, 7.1% vs 3.3% for osteonecrosis, 8.4% vs 4.3% for fracture; P < .01), longer hospital course (3.4 vs 1.9 days for osteoarthritis, 4.1 vs 2.1 days for osteonecrosis, 6.3 vs 3.9 days for fracture; P < .01), and increased costs ($18,712 vs $16,142 for osteoarthritis, $19,876 vs $16,060 for osteonecrosis, $22,185 vs $19,613 for fracture; P < .01). Frail osteoarthritis patients had higher 30-day complication (4.4% vs 1.9%; P < .01) and reoperation rates (1.6% vs 0.93%; P < .01). Frail osteonecrosis patients had higher 30-day complication rates (5.3% vs 2.6%; P < .01). Frail hip fracture patients had higher 30-day complication (6.6% vs 3.8%; P < .01) and reoperation rates (2.9% vs 1.8%; P < .01).
    Conclusion: Frailty is associated with increased healthcare burden and postoperative events after primary THA. Further research can identify high-risk patients and mitigate complications and costs.
    MeSH term(s) Arthroplasty, Replacement, Hip/adverse effects ; Fractures, Bone/surgery ; Frailty/complications ; Frailty/epidemiology ; Hospitalization ; Humans ; Osteoarthritis/surgery ; Osteonecrosis/surgery ; Patient Readmission ; Postoperative Complications/epidemiology ; Postoperative Complications/etiology ; Risk Factors
    Language English
    Publishing date 2022-01-25
    Publishing country United States
    Document type Journal Article
    ZDB-ID 632770-9
    ISSN 1532-8406 ; 0883-5403
    ISSN (online) 1532-8406
    ISSN 0883-5403
    DOI 10.1016/j.arth.2022.01.047
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Patient Frailty is Correlated With Increased Adverse Events and Costs After Revision Total Hip Arthroplasty.

    Tram, Michael K / Tabbaa, Ameer / Lakra, Akshay / Anoushiravani, Afshin A / Bernasek, Thomas L / Lyons, Steven T / O'Connor, Casey M

    The Journal of arthroplasty

    2023  

    Abstract: Background: Frailty has been associated with poor outcomes and higher costs after primary total hip arthroplasty. However, frailty has not been studied in relation to outcomes after revision total hip arthroplasty (rTHA). This study examined the ... ...

    Abstract Background: Frailty has been associated with poor outcomes and higher costs after primary total hip arthroplasty. However, frailty has not been studied in relation to outcomes after revision total hip arthroplasty (rTHA). This study examined the relationship between the Hospital Frailty Risk Score (HFRS), postoperative outcomes, and cost profiles following rTHA.
    Methods: In this retrospective cohort study, we identified patients who underwent rTHA from January 2017 to November 2019 in the Nationwide Readmission Database. The 3 most frequently reported diagnosis codes for rTHA were then selected: dislocation; mechanical loosening; and infection. We calculated the HFRS for each patient to determine frailty status. We compared 30-day readmission rate, length of stay, and hospitalization cost between frail and nonfrail patients, using multivariate logistic and negative binomial regressions to adjust for covariates. We identified 36,243 total patients who underwent rTHA. Overall, 15,448 patients had a revision for dislocation, 11,062 for mechanical loosening, and 9,733 for infection.
    Results: Compared to nonfrail patients, frail patients had higher rates of 30-day readmission, longer length of stay, and higher hospitalization cost. Frail patients had significantly higher rates of 30-day complication and 30-day reoperation.
    Conclusions: Frailty, measured using HFRS, is associated with increased postoperative complications and costs after rTHA. The HFRS has the ability to efficiently identify frail patients at-risk for perioperative complications enabling care teams to better focus optimization interventions on this patient cohort.
    Language English
    Publishing date 2023-12-21
    Publishing country United States
    Document type Journal Article
    ZDB-ID 632770-9
    ISSN 1532-8406 ; 0883-5403
    ISSN (online) 1532-8406
    ISSN 0883-5403
    DOI 10.1016/j.arth.2023.12.027
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Clandestinity and insurgent consolidation

    O'Connor, Francis

    Political Geography

    The M-19's rebel governance in urban Colombia

    2023  Volume 105

    Abstract: ... This article explores the forms of rebel governance adopted by the M-19 in Colombia to construct ... variation of the M-19's insurgency by analysing its diverging experiences of its clandestine mobilisation ... of M-19 primary archival sources. ...

    Abstract Insurgent movements have commonly re-located to isolated rural areas with weak state presence where their security was guaranteed by a hostile environment to launch insurgencies. Yet, some groups have chosen to predominantly base their armed mobilisations in cities with much higher security risks where they are obliged to mobilise clandestinely. Clandestinity is often seen as an impediment to insurgent consolidation. This article explores the forms of rebel governance adopted by the M-19 in Colombia to construct networks of social ties needed to embed itself in urban environments. It highlights a case of urban rebel governance without territorial control, thus extending the scope of the rebel governance literature. It addresses the spatial variation of the M-19's insurgency by analysing its diverging experiences of its clandestine mobilisation in Bogotá and Cali, as well as a brief window where it conducted more public urban mobilisation. It is based on qualitative interviews conducted with former militants in Bogota in 2018 and an extensive qualitative, coding of M-19 primary archival sources.
    Keywords Life Science
    Language English
    Publishing country nl
    Document type Article ; Online
    ISSN 0962-6298
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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