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  1. Article ; Online: Ignition sequence start: epithelial allergen sensing and regulation of the allergic inflammatory response.

    Murphy, Ryan C / Altman, Matthew C

    Nature immunology

    2021  Volume 22, Issue 10, Page(s) 1207–1209

    MeSH term(s) Allergens ; Humans ; Hypersensitivity
    Chemical Substances Allergens
    Language English
    Publishing date 2021-09-16
    Publishing country United States
    Document type Journal Article ; Comment
    ZDB-ID 2016987-5
    ISSN 1529-2916 ; 1529-2908
    ISSN (online) 1529-2916
    ISSN 1529-2908
    DOI 10.1038/s41590-021-01005-0
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: The Intersection between Autoimmunity, Macrophage Dysfunction, Endotype, and Exacerbations in Severe Asthma.

    Murphy, Ryan C / Morrell, Eric D / Hallstrand, Teal S

    American journal of respiratory and critical care medicine

    2022  Volume 207, Issue 4, Page(s) 383–385

    MeSH term(s) Humans ; Autoantibodies ; Autoimmunity ; Asthma/physiopathology ; Respiratory System/physiopathology
    Chemical Substances Autoantibodies
    Language English
    Publishing date 2022-11-17
    Publishing country United States
    Document type Editorial ; Comment
    ZDB-ID 1180953-x
    ISSN 1535-4970 ; 0003-0805 ; 1073-449X
    ISSN (online) 1535-4970
    ISSN 0003-0805 ; 1073-449X
    DOI 10.1164/rccm.202211-2074ED
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Racial disparity and all-cause mortality in connective tissue diseases: a population-based, retrospective cohort study.

    Hollins, Lauren C / Murphy, Ryan P / Foulke, Galen / Butt, Melissa / Maczuga, Steven / Helm, Matthew

    International journal of dermatology

    2023  Volume 62, Issue 11, Page(s) e581–e583

    Language English
    Publishing date 2023-06-29
    Publishing country England
    Document type Letter
    ZDB-ID 412254-9
    ISSN 1365-4632 ; 0011-9059 ; 1461-1244
    ISSN (online) 1365-4632
    ISSN 0011-9059 ; 1461-1244
    DOI 10.1111/ijd.16769
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Oriented internal electrostatic fields: an emerging design element in coordination chemistry and catalysis.

    Weberg, Alexander B / Murphy, Ryan P / Tomson, Neil C

    Chemical science

    2022  Volume 13, Issue 19, Page(s) 5432–5446

    Abstract: The power of oriented electrostatic fields (ESFs) to influence chemical bonding and reactivity is a phenomenon of rapidly growing interest. The presence of strong ESFs has recently been implicated as one of the most significant contributors to the ... ...

    Abstract The power of oriented electrostatic fields (ESFs) to influence chemical bonding and reactivity is a phenomenon of rapidly growing interest. The presence of strong ESFs has recently been implicated as one of the most significant contributors to the activity of select enzymes, wherein alignment of a substrate's changing dipole moment with a strong, local electrostatic field has been shown to be responsible for the majority of the enzymatic rate enhancement. Outside of enzymology, researchers have studied the impacts of "internal" electrostatic fields
    Language English
    Publishing date 2022-04-20
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 2559110-1
    ISSN 2041-6539 ; 2041-6520
    ISSN (online) 2041-6539
    ISSN 2041-6520
    DOI 10.1039/d2sc01715f
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Exploring definitions of daily enteric methane emission phenotypes for genetic evaluations using a population of indoor-fed multi-breed growing cattle with feed intake data.

    Ryan, Clodagh V / Pabiou, Thierry / Purfield, Deirdre C / Berry, Donagh P / Conroy, Stephen / Murphy, Craig P / Evans, Ross D

    Journal of animal science

    2024  Volume 102

    Abstract: Genetic selection has been identified as a promising approach for reducing enteric methane (CH4) emissions; a prerequisite for genetic evaluations; however, these are estimates of the necessary genetic parameters based on a population representative of ... ...

    Abstract Genetic selection has been identified as a promising approach for reducing enteric methane (CH4) emissions; a prerequisite for genetic evaluations; however, these are estimates of the necessary genetic parameters based on a population representative of where the genetic evaluations will be used. The objective of this study was, therefore, to derive genetic parameters for a series of definitions of CH4, carbon dioxide (CO2), and dry matter intake (DMI) as well as genetic correlations between CH4, CO2, and DMI in a bid to address the paucity of studies involving methane emissions measured in beef cattle using GreenFeed systems. Lastly, estimated breeding values (EBV) were generated for nine alternative definitions of CH4 using the derived genetic parameters; the EBV were validated against both phenotypic performance (adjusted for non-genetic effects) and the Legarra and Reverter method comparing EBV generated for a subset of the dataset compared to EBV generated from the entire dataset. Individual animal CH4 and CO2 records were available from a population of 1,508 multi-breed growing beef cattle using 10 GreenFeed Emission Monitoring systems. Nine trait definitions for CH4 and CO2 were derived: individual spot measures, the average of all spot measures within a 3-h, 6-h, 12-h, 1-d, 5-d, 10-d, and 15-d period and the average of all spot measures across the full test period (20 to 114 d on test). Heritability estimates from 1,155 animals, for CH4, increased as the length of the averaging period increased and ranged from 0.09 ± 0.03 for the individual spot measures trait to 0.43 ± 0.11 for the full test average trait; a similar trend existed for CO2 with the estimated heritability ranging from 0.17 ± 0.04 to 0.50 ± 0.11. Enteric CH4 was moderately to strongly genetically correlated with DMI with a genetic correlation of 0.72 ± 0.02 between the spot measures of CH4 and a 1-d average DMI. Correlations, adjusted for heritability, between the adjusted phenotype and (parental average) EBV ranged from 0.56 to 1.14 across CH4 definitions and the slope between the adjusted phenotype and EBV ranged from 0.92 to 1.16 (expectation = 1). Validation results from the Legarra and Reverter regression method revealed a level bias of between -0.81 and -0.45, a dispersion bias of between 0.93 and 1.17, and ratio accuracy (ratio of the partial evaluation accuracies on whole evaluation accuracies) from 0.28 to 0.38. While EBV validation results yielded no consensus, CH4 is a moderately heritable trait, and selection for reduced CH4 is achievable.
    MeSH term(s) Cattle/genetics ; Animals ; Methane ; Carbon Dioxide ; Animal Feed/analysis ; Eating ; Phenotype ; Diet/veterinary
    Chemical Substances Methane (OP0UW79H66) ; Carbon Dioxide (142M471B3J)
    Language English
    Publishing date 2024-02-07
    Publishing country United States
    Document type Journal Article
    ZDB-ID 390959-1
    ISSN 1525-3163 ; 0021-8812
    ISSN (online) 1525-3163
    ISSN 0021-8812
    DOI 10.1093/jas/skae034
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  6. Article ; Online: Association between uveitis and Lichen planus in the all of us research program.

    Murphy, Michael J / Heyang, Michael / Fan, Ryan / Leasure, Audrey C / Damsky, William / Cohen, Jeffrey M

    Archives of dermatological research

    2023  Volume 315, Issue 9, Page(s) 2729–2730

    MeSH term(s) Humans ; Population Health ; Lichen Planus/diagnosis ; Lichen Planus/epidemiology ; Lichen Planus, Oral ; Uveitis/diagnosis ; Uveitis/epidemiology
    Language English
    Publishing date 2023-07-25
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 130131-7
    ISSN 1432-069X ; 0340-3696
    ISSN (online) 1432-069X
    ISSN 0340-3696
    DOI 10.1007/s00403-023-02675-6
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  7. Article ; Online: Exploring the origin and regulatory role of mast cells in asthma.

    Murphy, Ryan C / Hallstrand, Teal S

    Current opinion in allergy and clinical immunology

    2020  Volume 21, Issue 1, Page(s) 71–78

    Abstract: Purpose of review: Mast cells have previously been thought to function solely as effector cells in asthma but more recent studies have indicated that mast cells may play a more central role in propagating and regulating lower airway inflammation in ... ...

    Abstract Purpose of review: Mast cells have previously been thought to function solely as effector cells in asthma but more recent studies have indicated that mast cells may play a more central role in propagating and regulating lower airway inflammation in asthma.
    Recent findings: Initial studies have found increased numbers of mast cell progenitors (MCPs) in the peripheral blood of patients with asthma and these cells could contribute to the increased number of progenitors identified in the airways of patients with asthma. There are unique subpopulations of mast cells within the asthmatic airway, which are characterized by their physical location and distinguished by their expression profile of mast cell proteases. Intraepithelial mast cells are tightly associated with type-2 (T2) inflammation but additional studies have suggested a role for anti-mast cell therapies as a treatment for T2-low asthma. Mast cells have recently been shown to closely communicate with the airway epithelium and airway smooth muscle to regulate lower airway inflammation and airway hyperresponsiveness.
    Summary: Recent studies have better illuminated the central role of mast cells in regulating lower airway inflammation and airway hyperresponsiveness.
    MeSH term(s) Asthma/blood ; Asthma/immunology ; Asthma/pathology ; Carboxypeptidases A/metabolism ; Cell Differentiation/immunology ; Chymases/metabolism ; Humans ; Inflammation/blood ; Inflammation/immunology ; Inflammation/pathology ; Mast Cells/immunology ; Mast Cells/metabolism ; Respiratory Mucosa/cytology ; Respiratory Mucosa/immunology ; Respiratory Mucosa/pathology ; Signal Transduction/immunology ; Tryptases/metabolism
    Chemical Substances CPA3 protein, human (EC 3.4.17.1) ; Carboxypeptidases A (EC 3.4.17.1) ; CMA1 protein, human (EC 3.4.21.39) ; Chymases (EC 3.4.21.39) ; Tryptases (EC 3.4.21.59)
    Language English
    Publishing date 2020-12-13
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Review
    ZDB-ID 2088710-3
    ISSN 1473-6322 ; 1528-4050
    ISSN (online) 1473-6322
    ISSN 1528-4050
    DOI 10.1097/ACI.0000000000000703
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  8. Article ; Online: Selecting the Optimal Therapy for Mild Asthma.

    Murphy, Ryan C / Mak, Garbo / Feemster, Laura C / Hallstrand, Teal S

    Annals of the American Thoracic Society

    2021  Volume 18, Issue 12, Page(s) 1955–1957

    MeSH term(s) Anti-Asthmatic Agents/therapeutic use ; Asthma/drug therapy ; Humans
    Chemical Substances Anti-Asthmatic Agents
    Language English
    Publishing date 2021-12-01
    Publishing country United States
    Document type Editorial ; Comment
    ZDB-ID 2717461-X
    ISSN 2325-6621 ; 1943-5665 ; 2325-6621
    ISSN (online) 2325-6621 ; 1943-5665
    ISSN 2325-6621
    DOI 10.1513/AnnalsATS.202106-697ED
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  9. Article ; Online: What is the impact of a Hepatitis C 'test, trace and treat' pilot using peer workers?

    Caroline, Allsop / Kate, Mcque / Roberts, Mark / Ryan, Jelley / Murphy, Suzanne / Richardson, Carrie / Coyte, Aishah / Taha, Yusri / Stuart, McPherson

    Journal of viral hepatitis

    2023  Volume 30, Issue 12, Page(s) 922–925

    Abstract: Chronic Hepatitis C virus (HCV) infection is a major cause of morbidity and deaths worldwide. HCV ...

    Abstract Chronic Hepatitis C virus (HCV) infection is a major cause of morbidity and deaths worldwide. HCV treating teams are working toward the goal of eliminating HCV by 2030. People who inject drugs (PWIDs) are at high risk of HCV but contact tracing is not routine practice. Here, we present the outcomes of a HCV 'test, trace and treat' pilot using peer workers to test contacts of individuals with HCV. PWIDs with HCV were invited to participate when they presented for treatment. For those agreeing to participate, a peer approached them to invite potential contacts for HCV testing. Data were collected on uptake, HCV test results, treatment rates and reasons for declining. Overall, 295 individuals (162 recent HCV [<1 year], 69 reinfections, 64 known chronic HCV) were invited to participate, of whom 147 (50%) agreed and 30 (20% of those agreeing) brought forward 120 contacts for testing. Of these, 44 (37%) were HCV RNA positive, including 23 who were not known to services. 34 (77%) started antiviral treatment. HCV RNA positivity was highest in contacts of reinfections (45%) compared with recent HCV (33%) and known chronic HCV (25%). The most common reason for index individuals declining participation was that they reported no longer being in contact with individuals from their injecting network (65%). In conclusion, half of PWIDs with HCV agreed to participate in the pilot, but only 20% of these brought contacts forward. The frequency of active HCV was high in the contacts and the majority started antiviral treatment.
    MeSH term(s) Humans ; Hepatitis C, Chronic/diagnosis ; Hepatitis C, Chronic/drug therapy ; Antiviral Agents/therapeutic use ; Reinfection ; RNA ; Substance Abuse, Intravenous/drug therapy ; Hepatitis C/diagnosis ; Hepatitis C/drug therapy ; Hepacivirus/genetics
    Chemical Substances Antiviral Agents ; RNA (63231-63-0)
    Language English
    Publishing date 2023-09-18
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 1212497-7
    ISSN 1365-2893 ; 1352-0504
    ISSN (online) 1365-2893
    ISSN 1352-0504
    DOI 10.1111/jvh.13888
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  10. Article ; Online: Evaluative approach to semen transfer in a case of alleged sexual assault: A case study.

    Murphy, Charlotte / Ryan, Jennifer

    Science & justice : journal of the Forensic Science Society

    2022  Volume 62, Issue 4, Page(s) 448–454

    Abstract: This paper demonstrates a logical framework for evaluating forensic evidence, first described by Cook et al. [1,2], using a casework example of an alleged sexual assault involving semen transfer. Here we show in real time how the case strategy can change ...

    Abstract This paper demonstrates a logical framework for evaluating forensic evidence, first described by Cook et al. [1,2], using a casework example of an alleged sexual assault involving semen transfer. Here we show in real time how the case strategy can change with additional information and how to use available experience and published data to interpret the findings obtained, given the background information provided. The findings of the case are interpreted using the Bayesian approach and are reported by giving the strength of support of scientific findings for one proposition rather than a competing proposition, as per the European Network of Forensic Science Institutes (ENSFI) guideline for evaluative reporting. We believe that using this paper as a template will aid other Forensic Science Practitioners (FSP) to add value and weight to their work by assisting them in evaluating and interpreting their own findings.
    MeSH term(s) Bayes Theorem ; Forensic Medicine ; Forensic Sciences ; Humans ; Semen ; Sex Offenses
    Language English
    Publishing date 2022-06-22
    Publishing country England
    Document type Case Reports ; Journal Article
    ZDB-ID 1230910-2
    ISSN 1876-4452 ; 1355-0306
    ISSN (online) 1876-4452
    ISSN 1355-0306
    DOI 10.1016/j.scijus.2022.05.007
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