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Article ; Online: Integrated network pharmacology and experimental verification to explore the potential mechanism of San Ying decoction for treating triple-negative breast cancer.

Yang, Xiaojuan / Li, Feifei / Shi, Youyang / Wu, Yuanyuan / Yang, Rui / Liu, Xiaofei / Zhang, Yang / Zhang, Guangtao / Ma, Mei / Luo, Zhanyang / Han, Xianghui / Xie, Ying / Liu, Sheng

Acta biochimica et biophysica Sinica

2024

Abstract: Traditional Chinese medicine (TCM) has been used to treat triple-negative breast cancer (TNBC), a breast cancer subtype with poor prognosis. Clinical studies have verified that the Sanyingfang formula (SYF), a TCM prescription, has obvious effects on ... ...

Abstract	Traditional Chinese medicine (TCM) has been used to treat triple-negative breast cancer (TNBC), a breast cancer subtype with poor prognosis. Clinical studies have verified that the Sanyingfang formula (SYF), a TCM prescription, has obvious effects on inhibiting breast cancer recurrence and metastasis, prolonging patient survival, and reducing clinical symptoms. However, its active ingredients and molecular mechanisms are still unclear. In this study, the active ingredients of each herbal medicine composing SYF and their target proteins are obtained from the Traditional Chinese Medicine Systems Pharmacology database. Breast cancer-related genes are obtained from the GeneCards database. Major targets and pathways related to SYF treatment in breast cancer are identified by analyzing the above data. By conducting molecular docking analysis, we find that the active ingredients quercetin and luteolin bind well to the key targets KDR1, PPARG, SOD1, and VCAM1.
Language	English
Publishing date	2024-03-21
Publishing country	China
Document type	Journal Article
ZDB-ID	2175256-4
ISSN	1745-7270 ; 0582-9879 ; 1672-9145
ISSN (online)	1745-7270
ISSN	0582-9879 ; 1672-9145
DOI	10.3724/abbs.2024015
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: Correction: Ying et al. Dynamic Change in Starch Biosynthetic Enzymes Complexes during Grain-Filling Stages in BEIIb Active and Deficient Rice.

Ying, Yining / Xu, Feifei / Zhang, Zhongwei / Tappiban, Piengtawan / Bao, Jinsong

International journal of molecular sciences

2023 Volume 24, Issue 10

Abstract: In the original publication [ ... ]. ...

Abstract	In the original publication [...].
Language	English
Publishing date	2023-05-11
Publishing country	Switzerland
Document type	Published Erratum
ZDB-ID	2019364-6
ISSN	1422-0067 ; 1422-0067 ; 1661-6596
ISSN (online)	1422-0067
ISSN	1422-0067 ; 1661-6596
DOI	10.3390/ijms24108583
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Article ; Online: Evaluation of the mechanism of Gong Ying San activity on dairy cows mastitis by network pharmacology and metabolomics analysis.

Gao, Shuang / Tang, Liyun / Ma, Jiayi / Wang, Kaiming / Yao, Hua / Tong, Jinjin / Zhang, Hua

PloS one

2024 Volume 19, Issue 4, Page(s) e0299234

Abstract: ... the pharmacological mechanism of the traditional Chinese medicine formulation, Gong Ying San (GYS), by infrared ...

Abstract	Objectives: The goal of this investigation was to identify the main compounds and the pharmacological mechanism of the traditional Chinese medicine formulation, Gong Ying San (GYS), by infrared spectral absorption characteristics, metabolomics, network pharmacology, and molecular-docking analysis for mastitis. The antibacterial and antioxidant activities were determined in vitro. Methods: The chemical constituents of GYS were detected by ultra-high-performance liquid chromatography Q-extractive mass spectrometry (UHPLC-QE-MS). Related compounds were screened from the Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform (TCMSP, http://tcmspw.com/tcmsp.php) and the Encyclopedia of Traditional Chinese Medicine (ETCM, http://www.tcmip.cn/ETCM/index.php/Home/) databases; genes associated with mastitis were identified in DisGENT. A protein-protein interaction (PPI) network was generated using STRING. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment screening was conducted using the R module. Molecular-docking analyses were performed with the AutoDockTools V1.5.6. Results: Fifty-four possible compounds in GYS with forty likely targets were found. The compound-target-network analysis showed that five of the ingredients, quercetin, luteolin, kaempferol, beta-sitosterol, and stigmasterol, had degree values >41.6, and the genes TNF, IL-6, IL-1β, ICAM1, CXCL8, CRP, IFNG, TP53, IL-2, and TGFB1 were core targets in the network. Enrichment analysis revealed that pathways associated with cancer, lipids, atherosclerosis, and PI3K-Akt signaling pathways may be critical in the pharmacology network. Molecular-docking data supported the hypothesis that quercetin and luteolin interacted well with TNF-α and IL-6. Conclusions: An integrative investigation based on a bioinformatics-network topology provided new insights into the synergistic, multicomponent mechanisms of GYS's anti-inflammatory, antibacterial, and antioxidant activities. It revealed novel possibilities for developing new combination medications for reducing mastitis and its complications.
MeSH term(s)	Animals ; Female ; Humans ; Cattle ; Network Pharmacology ; Antioxidants ; Interleukin-6 ; Luteolin ; Phosphatidylinositol 3-Kinases ; Quercetin ; Mastitis ; Anti-Bacterial Agents ; Molecular Docking Simulation ; Drugs, Chinese Herbal ; Medicine, Chinese Traditional
Chemical Substances	Antioxidants ; Interleukin-6 ; Luteolin (KUX1ZNC9J2) ; Phosphatidylinositol 3-Kinases (EC 2.7.1.-) ; Quercetin (9IKM0I5T1E) ; Anti-Bacterial Agents ; Drugs, Chinese Herbal
Language	English
Publishing date	2024-04-17
Publishing country	United States
Document type	Journal Article
ZDB-ID	2267670-3
ISSN	1932-6203 ; 1932-6203
ISSN (online)	1932-6203
ISSN	1932-6203
DOI	10.1371/journal.pone.0299234
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Article: SIRT1/P53 in retinal pigment epithelial cells in diabetic retinopathy: a gene co-expression analysis and He-Ying-Qing-Re formula treatment.

Zhang, Shuyan / Wu, Jiajun / Wang, Leilei / Mu, Lin / Xu, Xiaoyu / Li, Jiahui / Tang, Guoyi / Chen, Guang / Zhang, Cheng / Zhang, Yinjian / Feng, Yibin

Frontiers in molecular biosciences

2024 Volume 11, Page(s) 1366020

Abstract: ... visual impairment or blindness. He-Ying-Qing-Re formula (HF), a traditional Chinese medicinal concoction, has been ...

Abstract	Objective: Diabetic retinopathy (DR) is a severe diabetic complication that leads to severe visual impairment or blindness. He-Ying-Qing-Re formula (HF), a traditional Chinese medicinal concoction, has been identified as an efficient therapy for DR with retinal vascular dysfunction for decades and has been experimentally reported to ameliorate retinal conditions in diabetic mice. This study endeavors to explore the therapeutic potential of HF with key ingredients in DR and its underlying novel mechanisms. Methods: Co-expression gene modules and hub genes were calculated by weighted gene co-expression network analysis (WGCNA) based on transcriptome sequencing data from high-glucose-treated adult retinal pigment epithelial cell line-19 (ARPE-19). The chromatographic fingerprint of HF was established by ultra-performance liquid chromatography coupled with high-resolution mass spectrometry (UPLC-Q-TOF-MS). The molecular affinity of the herbal compound was measured by molecular docking. Reactive oxygen species (ROS) was measured by a DCFDA/H2DCFDA assay. Apoptosis was detected using the TUNEL Assay Kit, while ELISA, Western blot, and real-time quantitative reverse transcription polymerase chain reaction (qRT-PCR) were used for detecting the cytokine, protein, and mRNA expressions, respectively. Results: Key compounds in HF were identified as luteolin, paeoniflorin, and nobiletin. For WGCNA, ME-salmon ("protein deacetylation") was negatively correlated with ME-purple ("oxidative impairment") in high-glucose-treated ARPE-19. Luteolin has a high affinity for SIRT1 and P53, as indicated by molecular docking. Luteolin has a hypoglycemic effect on type I diabetic mice. Moreover, HF and luteolin suppress oxidative stress production (ROS and MDA), inflammatory factor expression (IL-6, TNF-α, IL1-β, and MCP-1), and apoptosis, as shown in the Conclusion: Using HF and its active compound luteolin as therapeutic agents offers a promising approach to diabetic retinopathy treatment. It primarily suppressed protein acetylation and oxidative stress via the SIRT1/P53 pathway in retinal pigment epithelial cells.
Language	English
Publishing date	2024-04-03
Publishing country	Switzerland
Document type	Journal Article
ZDB-ID	2814330-9
ISSN	2296-889X
ISSN	2296-889X
DOI	10.3389/fmolb.2024.1366020
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Book ; Audio / Video: Bei ying

Zhang, Lisheng

2004

Author's details	[Regie: Zhang Lisheng]
Language	Chinese
Size	3 DVDs (Region 1-8), 350 Min
Publishing place	China
Document type	Book ; Audio / Video
Note	Audiosprache: Chinesisch ; Untertitel: Chinesisch (Kurzzeichen)
Database	Former special subject collection: coastal and deep sea fishing

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Article: [Sugar and sugar alcohols in infants Ying Yang Bao based on derivatization and gas chromatography-mass spectrometry].

Ma, Yan / Cheng, Jiali / Tang, Yanbin / Gong, Zhaolong / Shen, Shi / Chen, Chen / Zhang, Xuesong

Wei sheng yan jiu = Journal of hygiene research

2020 Volume 49, Issue 3, Page(s) 442–446

Abstract: ... of seven sugars and sugar alcohols in infants Ying Yang Bao nutritional supplements.: Methods ...

Abstract	Objective: To establish a gas chromatography-mass spectrometry(GC-MS) method for determination of seven sugars and sugar alcohols in infants Ying Yang Bao nutritional supplements. Methods: The samples were extracted with pure water and diluted with 95% ethanol. After being dried by nitrogen, methoxyamine hydrochloride oxime was dissolved in pyridine and derivatized by MSTFA. The capillary column TG-5 Ms(30 m×0. 25 mm, 0. 25 μm) was used for determination by GC-MS. Results: The limits of detection(LODs)were 1. 0-3. 0 mg/g and the limits of quantification(LOQs)were 3. 3-10. 0 mg/g. The average recoveries of seven kinds of sugar and sugar alcohols were 86. 7%-96. 7%, and the relative standard deviation was less than 5. 1%(n=6). The contents of seven sugars and sugar alcohols in soybean matrix nutritional supplements were determined in the range of 0. 25-13. 70 g/100 g, which was consistent with the nutrition label of the products. Conclusion: The method is convenient, mild and fit for batch sample analysis.
MeSH term(s)	Gas Chromatography-Mass Spectrometry ; Limit of Detection ; Sugar Alcohols/analysis ; Sugars
Chemical Substances	Sugar Alcohols ; Sugars
Language	Chinese
Publishing date	2020-07-21
Publishing country	China
Document type	Journal Article
ZDB-ID	1050909-4
ISSN	1000-8020
ISSN	1000-8020
DOI	10. 19813/j. cnki. weishengyanjiu. 2020. 03. 016
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Zs.A 4878: Show issues

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ab Jg. 2022: Lesesaal (EG)

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Article ; Online: Propioniciclava sinopodophylli sp. nov., isolated from leaves of Sinopodophyllum hexandrum (Royle) Ying.

Zhang, Lei / Li, Qiqi / Chen, Chaoqiong / Li, Xin / Li, Muhang / Hu, Jingjiang / Shen, Xihui

International journal of systematic and evolutionary microbiology

2017 Volume 67, Issue 10, Page(s) 4111–4115

Abstract: A Gram-reaction-positive, facultatively anaerobic, rod-shaped and non-motile bacterial strain, designated TEYR- ... ...

Abstract	A Gram-reaction-positive, facultatively anaerobic, rod-shaped and non-motile bacterial strain, designated TEYR-7
MeSH term(s)	Bacterial Typing Techniques ; Base Composition ; Berberidaceae/microbiology ; Cell Wall/chemistry ; China ; DNA, Bacterial/genetics ; Diaminopimelic Acid/chemistry ; Fatty Acids/chemistry ; Glycolipids/chemistry ; Nucleic Acid Hybridization ; Peptidoglycan/chemistry ; Phospholipids/chemistry ; Phylogeny ; Plant Leaves/microbiology ; Propionibacteriaceae/classification ; Propionibacteriaceae/genetics ; Propionibacteriaceae/isolation & purification ; RNA, Ribosomal, 16S/genetics ; Sequence Analysis, DNA ; Vitamin K 2/analogs & derivatives ; Vitamin K 2/chemistry
Chemical Substances	DNA, Bacterial ; Fatty Acids ; Glycolipids ; Peptidoglycan ; Phospholipids ; RNA, Ribosomal, 16S ; Vitamin K 2 (11032-49-8) ; menaquinone 9 (523-39-7) ; Diaminopimelic Acid (583-93-7)
Language	English
Publishing date	2017-10
Publishing country	England
Document type	Journal Article
ZDB-ID	2002336-4
ISSN	1466-5034 ; 1466-5026
ISSN (online)	1466-5034
ISSN	1466-5026
DOI	10.1099/ijsem.0.002265
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Zs.A 409: Show issues

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Article: Quality evaluation of Sinopodophyllum hexandrum (Royle) Ying based on active compounds, bioactivities and RP-HPLC fingerprint

Liu, Wei / Yin, Dong-xue / Tang, Nan / Zhang, Tong / Wang, Jia / Qin, De-hua / Zhang, Zheng

Industrial crops and products. 2021 Dec. 15, v. 174

2021

Abstract: Sinopodophyllum hexandrum (Royle) Ying is a perennial medicinal plant that produces the anti-cancer ...

Abstract	Sinopodophyllum hexandrum (Royle) Ying is a perennial medicinal plant that produces the anti-cancer lignan compositions especially podophyllotoxin. Since podophyllotoxin commercial production via chemical synthesis, biotechnological intervention or cultivation has yet to meet the increasing demand, mining the potentially available plant organs to discover more natural podophyllotoxin sources is essential. This study investigated the reversed-phase high performance liquid chromatography (RP-HPLC) fingerprint, active chemicals (lignans, flavonoids, and phenolic profiles), and bioactivities (antimicrobial and cytotoxic activities) of distinct S. hexandrum plant organs. Among different plant organs, the rhizome is a preponderant organ due to high active compounds especially podophyllotoxin at 71.615☓10³ μg/mL, high bioactivity with low minimum inhibitory concentration (MIC)/minimal bactericidal concentration (MBC)/minimal fungicidal concentration (MFC) value of 5/5/5 mg/mL, and low CIR₅₀ value of 0.0718 μg/mL, followed by root. Chemometrics analysis techniques, including correlation analysis (CA), similarity analysis (SA), hierarchical cluster analysis (HCA), principal component analysis (PCA), and discriminant analysis (DA), were further employed to facilitate accurate quality assessment of different plant organs from S. hexandrum. The findings unambiguously validated the clustering of seven samples into four major groups (G1–G4), with G1 (rhizome)>G2 (root)>G4 (fruit, blossom, and leaf)>G3 (stem and petiole) as the consistent quality ordering, despite significant differences in chemical compositions and bioactivities. Considered the practical application, the rhizome is, therefore, a preferred medicinal organ, and root could be considered as a substitute resource. The rhizome or root extraction could be used as a potential raw material source for natural antimicrobial agents and cancer cell inhibitors in the food, medicine, and healthcare industries. This research added to our understanding of the integrated exploitation and utilization extension of S. hexandrum resources. RP-HPLC fingerprinting in combination with chemometrics approaches was also confirmed as a highly reliable method for assessing the quality of S. hexandrum and other industrial crops.
Keywords	Podophyllum hexandrum ; chemometrics ; cluster analysis ; cytotoxicity ; discriminant analysis ; flavonoids ; fruits ; health services ; medicinal plants ; medicine ; minimum inhibitory concentration ; neoplasm cells ; petioles ; podophyllotoxin ; principal component analysis ; raw materials ; reversed-phase high performance liquid chromatography ; rhizomes ; synthesis
Language	English
Dates of publication	2021-1215
Publishing place	Elsevier B.V.
Document type	Article
ZDB-ID	1132158-1
ISSN	1872-633X ; 0926-6690
ISSN (online)	1872-633X
ISSN	0926-6690
DOI	10.1016/j.indcrop.2021.114159
Database	NAL-Catalogue (AGRICOLA)

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Z 5577: Show issues

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Article ; Online: Endophytic Fungus from Sinopodophyllum emodi (Wall.) Ying that Produces Podophyllotoxin.

Liang, Zizhen / Zhang, Jia / Zhang, Xuan / Li, Jinjie / Zhang, Xiaoqian / Zhao, Changqi

Journal of chromatographic science

2016 Volume 54, Issue 2, Page(s) 175–178

Abstract: ... Alternaria tenuissima isolated from Sinopodophyllum emodi (Wall.) Ying. The identification of podophyllotoxin ...

Abstract	The aryltetralin lactone podophyllotoxin, which exhibits pronounced antineoplastic activity, is used as the precursor of the following three clinical anticancer drugs: Etoposide™, Etopophos™ and Teniposide™. The natural occurrence of this arylnaphthalene lignan is scarce and unable to meet the ever-rising demand in the medical industry. Thus, developing alternative sources for the production of podophyllotoxin is extremely urgent. This is the first report of the production of podophyllotoxin from endophytic Alternaria tenuissima isolated from Sinopodophyllum emodi (Wall.) Ying. The identification of podophyllotoxin was performed using high-performance liquid chromatography and liquid chromatography-mass spectrometry (MS)-MS and confirmed by comparison with authentic standards.
MeSH term(s)	Alternaria/chemistry ; Alternaria/isolation & purification ; Alternaria/metabolism ; Berberidaceae/microbiology ; Chromatography, High Pressure Liquid/methods ; Endophytes/chemistry ; Endophytes/isolation & purification ; Endophytes/metabolism ; Humans ; Podophyllotoxin/analysis ; Podophyllotoxin/metabolism
Chemical Substances	Podophyllotoxin (L36H50F353)
Language	English
Publishing date	2016-02
Publishing country	United States
Document type	Evaluation Studies ; Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	80141-0
ISSN	1945-239X ; 0021-9665
ISSN (online)	1945-239X
ISSN	0021-9665
DOI	10.1093/chromsci/bmv124
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Zs.A 895: Show issues

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Jg. 1995 - 2021: Lesesall (1.OG)
ab Jg. 2022: Lesesaal (EG)

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Article ; Online: Neuroprotective effect of He-Ying-Qing-Re formula on retinal ganglion cell in diabetic retinopathy.

Zhang, Cheng / Xu, Yu / Tan, Hor-Yue / Li, Sha / Wang, Ning / Zhang, Yinjian / Feng, Yibin

Journal of ethnopharmacology

2017 Volume 214, Page(s) 179–189

Abstract: Ethnopharmacology relevance: He-Ying-Qing-Re Formula (HF) was empirically modified from Si-Miao ...

Abstract	Ethnopharmacology relevance: He-Ying-Qing-Re Formula (HF) was empirically modified from Si-Miao-Yong-An Decoction (SD), which was recorded in the literature of Divine Doctor's Secret Transmission, and has been utilized for centuries to treat vasculopathy through clearing heat and accelerating bloodstream. HF has been used as an effective holistic treatment of diabetic retinopathy (DR) for decades and experimentally reported to ameliorate retinal condition in diabetic mice. Aim of the study: Our study aims to investigate the effect of HF in preventing sustained hyperglycemia and hyperlipidemia-associated retinal ganglion cell (RGC) cell death and its possible mechanism. Materials and methods: Chromatographic fingerprint of HF was obtained upon the UPLC-based analytic system; Diabetic retinopathy was established in streptozotocin (STZ) injection-induced hyperglycemic mice; Alterations of retinal structure was assayed by H&E staining. Expression of PSD-95 and CHOP in retinae was assessed by immunofluorescence; RGC cell line (mRGC) was used for in vitro study. Cell death was analyzed by flow cytometry; Intracellular reactive oxygen species (ROS) was measured by 2',7'-dichlorofluorescin diacetate (DCFDA); Apoptosis-related proteins and signaling were monitored with immunoblotting and colorimetric assay. Results: Chlorogenic acid, ferulic acid, and rutin were identified in HF. HF attenuates the loss of RGCs, thinning of inner retinal layers in diabetic mice. Furthermore, expressions of Brn3a and PSD-95 were restored while CHOP level was downregulated upon HF treatment. In vitro study, HF alleviates H Conclusion: HF administration was a valid therapeutic approach for DR treatment, oriented at the blockade of endoplasmic reticulum- and mitochondria-dependent oxidative stress-induced retinal neurodegeneration including RGC apoptosis.
MeSH term(s)	Activating Transcription Factor 4/metabolism ; Animals ; Antioxidants/pharmacology ; Apoptosis/drug effects ; Apoptosis Regulatory Proteins/metabolism ; Blood Glucose/drug effects ; Blood Glucose/metabolism ; Cell Line ; Cytoprotection ; Diabetes Mellitus, Experimental/blood ; Diabetes Mellitus, Experimental/complications ; Diabetes Mellitus, Experimental/drug therapy ; Diabetic Retinopathy/blood ; Diabetic Retinopathy/etiology ; Diabetic Retinopathy/pathology ; Diabetic Retinopathy/prevention & control ; Disks Large Homolog 4 Protein/metabolism ; Dose-Response Relationship, Drug ; Drugs, Chinese Herbal/pharmacology ; Endoplasmic Reticulum Stress/drug effects ; Hydrogen Peroxide/toxicity ; Hypoglycemic Agents/pharmacology ; Male ; Mice, Inbred C57BL ; Mitochondria/drug effects ; Mitochondria/metabolism ; Mitochondria/pathology ; Neuroprotective Agents/pharmacology ; Oxidative Stress/drug effects ; Reactive Oxygen Species/metabolism ; Retinal Ganglion Cells/drug effects ; Retinal Ganglion Cells/metabolism ; Retinal Ganglion Cells/pathology ; Signal Transduction/drug effects ; Time Factors ; Transcription Factor CHOP/metabolism
Chemical Substances	Antioxidants ; Apoptosis Regulatory Proteins ; Atf4 protein, mouse ; Blood Glucose ; Ddit3 protein, mouse ; Disks Large Homolog 4 Protein ; Dlg4 protein, mouse ; Drugs, Chinese Herbal ; Hypoglycemic Agents ; Neuroprotective Agents ; Reactive Oxygen Species ; he-ying-qing-re ; Activating Transcription Factor 4 (145891-90-3) ; Transcription Factor CHOP (147336-12-7) ; Hydrogen Peroxide (BBX060AN9V)
Language	English
Publishing date	2017-12-15
Publishing country	Ireland
Document type	Journal Article
ZDB-ID	134511-4
ISSN	1872-7573 ; 0378-8741
ISSN (online)	1872-7573
ISSN	0378-8741
DOI	10.1016/j.jep.2017.12.018
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Zs.A 1494: Show issues

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