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  1. Article ; Online: Mechanistic Interplay between HIV-1 Reverse Transcriptase Enzyme Kinetics and Host SAMHD1 Protein: Viral Myeloid-Cell Tropism and Genomic Mutagenesis.

    Bowen, Nicole E / Oo, Adrian / Kim, Baek

    Viruses

    2022  Volume 14, Issue 8

    Abstract: Human immunodeficiency virus type 1 (HIV-1) reverse transcriptase (RT) has been the primary interest among studies on antiviral discovery, viral replication kinetics, drug resistance, and viral evolution. Following infection and entry into target cells, ... ...

    Abstract Human immunodeficiency virus type 1 (HIV-1) reverse transcriptase (RT) has been the primary interest among studies on antiviral discovery, viral replication kinetics, drug resistance, and viral evolution. Following infection and entry into target cells, the HIV-1 core disassembles, and the viral RT concomitantly converts the viral RNA into double-stranded proviral DNA, which is integrated into the host genome. The successful completion of the viral life cycle highly depends on the enzymatic DNA polymerase activity of RT. Furthermore, HIV-1 RT has long been known as an error-prone DNA polymerase due to its lack of proofreading exonuclease properties. Indeed, the low fidelity of HIV-1 RT has been considered as one of the key factors in the uniquely high rate of mutagenesis of HIV-1, which leads to efficient viral escape from immune and therapeutic antiviral selective pressures. Interestingly, a series of studies on the replication kinetics of HIV-1 in non-dividing myeloid cells and myeloid specific host restriction factor, SAM domain, and HD domain-containing protein, SAMHD1, suggest that the myeloid cell tropism and high rate of mutagenesis of HIV-1 are mechanistically connected. Here, we review not only HIV-1 RT as a key antiviral target, but also potential evolutionary and mechanistic crosstalk among the unique enzymatic features of HIV-1 RT, the replication kinetics of HIV-1, cell tropism, viral genetic mutation, and host SAMHD1 protein.
    MeSH term(s) Antiviral Agents/pharmacology ; DNA-Directed DNA Polymerase/genetics ; Genomics ; HIV Reverse Transcriptase/genetics ; HIV Reverse Transcriptase/metabolism ; HIV-1/genetics ; HIV-1/metabolism ; Humans ; Mutagenesis ; Myeloid Cells/metabolism ; SAM Domain and HD Domain-Containing Protein 1/genetics ; SAM Domain and HD Domain-Containing Protein 1/metabolism ; Viral Tropism ; Virus Replication
    Chemical Substances Antiviral Agents ; reverse transcriptase, Human immunodeficiency virus 1 (EC 2.7.7.-) ; HIV Reverse Transcriptase (EC 2.7.7.49) ; DNA-Directed DNA Polymerase (EC 2.7.7.7) ; SAM Domain and HD Domain-Containing Protein 1 (EC 3.1.5.-) ; SAMHD1 protein, human (EC 3.1.5.-)
    Language English
    Publishing date 2022-07-26
    Publishing country Switzerland
    Document type Journal Article ; Review ; Research Support, N.I.H., Extramural
    ZDB-ID 2516098-9
    ISSN 1999-4915 ; 1999-4915
    ISSN (online) 1999-4915
    ISSN 1999-4915
    DOI 10.3390/v14081622
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: WNT/β-catenin pathway is a key regulator of cardiac function and energetic metabolism.

    Balatskyi, Volodymyr V / Sowka, Adrian / Dobrzyn, Pawel / Piven, Oksana O

    Acta physiologica (Oxford, England)

    2023  Volume 237, Issue 3, Page(s) e13912

    Abstract: The WNT/β-catenin pathway is a master regulator of cardiac development and growth, and its activity is low in healthy adult hearts. However, even this low activity is essential for maintaining normal heart function. Acute activation of the WNT/β-catenin ... ...

    Abstract The WNT/β-catenin pathway is a master regulator of cardiac development and growth, and its activity is low in healthy adult hearts. However, even this low activity is essential for maintaining normal heart function. Acute activation of the WNT/β-catenin signaling cascade is considered to be cardioprotective after infarction through the upregulation of prosurvival genes and reprogramming of metabolism. Chronically high WNT/β-catenin pathway activity causes profibrotic and hypertrophic effects in the adult heart. New data suggest more complex functions of β-catenin in metabolic maturation of the perinatal heart, establishing an adult pattern of glucose and fatty acid utilization. Additionally, low basal activity of the WNT/β-catenin cascade maintains oxidative metabolism in the adult heart, and this pathway is reactivated by physiological or pathological stimuli to meet the higher energy needs of the heart. This review summarizes the current state of knowledge of the organization of canonical WNT signaling and its function in cardiogenesis, heart maturation, adult heart function, and remodeling. We also discuss the role of the WNT/β-catenin pathway in cardiac glucose, lipid metabolism, and mitochondrial physiology.
    MeSH term(s) Adult ; Female ; Humans ; Pregnancy ; beta Catenin/metabolism ; Heart ; Lipid Metabolism ; Wnt Signaling Pathway/physiology ; Myocardium/metabolism
    Chemical Substances beta Catenin
    Language English
    Publishing date 2023-01-13
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 2218636-0
    ISSN 1748-1716 ; 1748-1708
    ISSN (online) 1748-1716
    ISSN 1748-1708
    DOI 10.1111/apha.13912
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Gene editing of

    Schüssler, Moritz / Schott, Kerstin / Fuchs, Nina Verena / Oo, Adrian / Zahadi, Morssal / Rauch, Paula / Kim, Baek / König, Renate

    bioRxiv : the preprint server for biology

    2023  

    Abstract: Sterile α motif (SAM) and HD domain-containing protein 1 (SAMHD1) is a dNTP triphosphate triphosphohydrolase (dNTPase) and a potent restriction factor for immunodeficiency virus 1 (HIV-1), active in myeloid and resting ... ...

    Abstract Sterile α motif (SAM) and HD domain-containing protein 1 (SAMHD1) is a dNTP triphosphate triphosphohydrolase (dNTPase) and a potent restriction factor for immunodeficiency virus 1 (HIV-1), active in myeloid and resting CD4
    Language English
    Publishing date 2023-08-25
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2023.08.24.554731
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Mechanistic Interplay between HIV-1 Reverse Transcriptase Enzyme Kinetics and Host SAMHD1 Protein: Viral Myeloid-Cell Tropism and Genomic Mutagenesis

    Bowen, Nicole E. / Oo, Adrian / Kim, Baek

    Viruses. 2022 July 26, v. 14, no. 8

    2022  

    Abstract: Human immunodeficiency virus type 1 (HIV-1) reverse transcriptase (RT) has been the primary interest among studies on antiviral discovery, viral replication kinetics, drug resistance, and viral evolution. Following infection and entry into target cells, ... ...

    Abstract Human immunodeficiency virus type 1 (HIV-1) reverse transcriptase (RT) has been the primary interest among studies on antiviral discovery, viral replication kinetics, drug resistance, and viral evolution. Following infection and entry into target cells, the HIV-1 core disassembles, and the viral RT concomitantly converts the viral RNA into double-stranded proviral DNA, which is integrated into the host genome. The successful completion of the viral life cycle highly depends on the enzymatic DNA polymerase activity of RT. Furthermore, HIV-1 RT has long been known as an error-prone DNA polymerase due to its lack of proofreading exonuclease properties. Indeed, the low fidelity of HIV-1 RT has been considered as one of the key factors in the uniquely high rate of mutagenesis of HIV-1, which leads to efficient viral escape from immune and therapeutic antiviral selective pressures. Interestingly, a series of studies on the replication kinetics of HIV-1 in non-dividing myeloid cells and myeloid specific host restriction factor, SAM domain, and HD domain-containing protein, SAMHD1, suggest that the myeloid cell tropism and high rate of mutagenesis of HIV-1 are mechanistically connected. Here, we review not only HIV-1 RT as a key antiviral target, but also potential evolutionary and mechanistic crosstalk among the unique enzymatic features of HIV-1 RT, the replication kinetics of HIV-1, cell tropism, viral genetic mutation, and host SAMHD1 protein.
    Keywords DNA ; DNA-directed DNA polymerase ; Human immunodeficiency virus 1 ; RNA ; RNA-directed DNA polymerase ; drug resistance ; enzyme kinetics ; evolution ; genome ; genomics ; mutagenesis ; therapeutics ; virus replication
    Language English
    Dates of publication 2022-0726
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    ZDB-ID 2516098-9
    ISSN 1999-4915
    ISSN 1999-4915
    DOI 10.3390/v14081622
    Database NAL-Catalogue (AGRICOLA)

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  5. Article ; Online: Gene editing of

    Schüssler, Moritz / Schott, Kerstin / Fuchs, Nina Verena / Oo, Adrian / Zahadi, Morssal / Rauch, Paula / Kim, Baek / König, Renate

    mBio

    2023  Volume 14, Issue 5, Page(s) e0225223

    Abstract: Importance: We introduce BLaER1 cells as an alternative myeloid cell model in combination with CRISPR/Cas9-mediated gene editing to study the influence of sterile α motif and HD domain-containing protein 1 (SAMHD1) T592 phosphorylation on anti-viral ... ...

    Abstract Importance: We introduce BLaER1 cells as an alternative myeloid cell model in combination with CRISPR/Cas9-mediated gene editing to study the influence of sterile α motif and HD domain-containing protein 1 (SAMHD1) T592 phosphorylation on anti-viral restriction and the control of cellular dNTP levels in an endogenous, physiologically relevant context. A proper understanding of the mechanism of the anti-viral function of SAMHD1 will provide attractive strategies aiming at selectively manipulating SAMHD1 without affecting other cellular functions. Even more, our toolkit may inspire further genetic analysis and investigation of restriction factors inhibiting retroviruses and their cellular function and regulation, leading to a deeper understanding of intrinsic anti-viral immunity.
    MeSH term(s) HIV-1 ; SAM Domain and HD Domain-Containing Protein 1/genetics ; SAM Domain and HD Domain-Containing Protein 1/metabolism ; Gene Editing ; Nucleotides/metabolism ; Macrophages
    Chemical Substances SAM Domain and HD Domain-Containing Protein 1 (EC 3.1.5.-) ; Nucleotides
    Language English
    Publishing date 2023-10-06
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2557172-2
    ISSN 2150-7511 ; 2161-2129
    ISSN (online) 2150-7511
    ISSN 2161-2129
    DOI 10.1128/mbio.02252-23
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Nucleotide Analogues Bearing a C2' or C3'-Stereogenic All-Carbon Quaternary Center as SARS-CoV-2 RdRp Inhibitors.

    Manchoju, Amarender / Zelli, Renaud / Wang, Gang / Eymard, Carla / Oo, Adrian / Nemer, Mona / Prévost, Michel / Kim, Baek / Guindon, Yvan

    Molecules (Basel, Switzerland)

    2022  Volume 27, Issue 2

    Abstract: The design of novel nucleoside triphosphate (NTP) analogues bearing an all-carbon quaternary center at C2' or C3' is described. The construction of this all-carbon stereogenic center involves the use of an intramoleculer photoredox-catalyzed reaction. ... ...

    Abstract The design of novel nucleoside triphosphate (NTP) analogues bearing an all-carbon quaternary center at C2' or C3' is described. The construction of this all-carbon stereogenic center involves the use of an intramoleculer photoredox-catalyzed reaction. The nucleoside analogues (NA) hydroxyl functional group at C2' was generated by diastereoselective epoxidation. In addition, highly enantioselective and diastereoselective Mukaiyama aldol reactions, diastereoselective
    MeSH term(s) Antiviral Agents/chemical synthesis ; Antiviral Agents/chemistry ; Antiviral Agents/pharmacology ; Carbon/chemistry ; Heterocyclic Compounds, 4 or More Rings/chemical synthesis ; Heterocyclic Compounds, 4 or More Rings/chemistry ; Heterocyclic Compounds, 4 or More Rings/pharmacology ; Nucleotides/chemical synthesis ; Nucleotides/chemistry ; Nucleotides/pharmacology ; RNA-Dependent RNA Polymerase/antagonists & inhibitors ; SARS-CoV-2/drug effects ; SARS-CoV-2/enzymology ; Stereoisomerism
    Chemical Substances Antiviral Agents ; Heterocyclic Compounds, 4 or More Rings ; Nucleotides ; Carbon (7440-44-0) ; RNA-Dependent RNA Polymerase (EC 2.7.7.48)
    Language English
    Publishing date 2022-01-17
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 1413402-0
    ISSN 1420-3049 ; 1431-5165 ; 1420-3049
    ISSN (online) 1420-3049
    ISSN 1431-5165 ; 1420-3049
    DOI 10.3390/molecules27020564
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: The thioredoxin system determines CHK1 inhibitor sensitivity via redox-mediated regulation of ribonucleotide reductase activity.

    Prasad, Chandra Bhushan / Oo, Adrian / Qiu, Zhaojun / Li, Na / Singh, Deepika / Xin, Xiwen / Cho, Young-Jae / Li, Zaibo / Zhang, Xiaoli / Yan, Chunhong / Zheng, Qingfei / Shao, Jimin / Wang, Qi-En / Kim, Baek / Zhang, Junran

    Research square

    2023  

    Abstract: Checkpoint kinase 1 (CHK1) is critical for cell survival under replication stress (RS). CHK1 inhibitors (CHK1i's) in combination with chemotherapy have shown promising results in preclinical studies but minimal efficacy with substantial toxicity in ... ...

    Abstract Checkpoint kinase 1 (CHK1) is critical for cell survival under replication stress (RS). CHK1 inhibitors (CHK1i's) in combination with chemotherapy have shown promising results in preclinical studies but minimal efficacy with substantial toxicity in clinical trials. To explore novel combinational strategies that can overcome these limitations, we performed an unbiased high-throughput screen in a non-small cell lung cancer (NSCLC) cell line and identified thioredoxin1 (Trx1), a major component of the mammalian antioxidant-system, as a novel determinant of CHK1i sensitivity. We established a role for redox recycling of RRM1, the larger subunit of ribonucleotide reductase (RNR), and a depletion of the deoxynucleotide pool in this Trx1-mediated CHK1i sensitivity. Further, the TrxR1 inhibitor auronafin, an anti-rheumatoid arthritis drug, shows a synergistic interaction with CHK1i via interruption of the deoxynucleotide pool. Together, these findings identify a new pharmacological combination to treat NSCLC that relies on a redox regulatory link between the Trx system and mammalian RNR activity.
    Language English
    Publishing date 2023-05-02
    Publishing country United States
    Document type Preprint
    DOI 10.21203/rs.3.rs-2814118/v1
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Nucleotide Analogues Bearing a C2′ or C3′-Stereogenic All-Carbon Quaternary Center as SARS-CoV-2 RdRp Inhibitors

    Amarender Manchoju / Renaud Zelli / Gang Wang / Carla Eymard / Adrian Oo / Mona Nemer / Michel Prévost / Baek Kim / Yvan Guindon

    Molecules, Vol 27, Iss 564, p

    2022  Volume 564

    Abstract: The design of novel nucleoside triphosphate (NTP) analogues bearing an all-carbon quaternary center at C2′ or C3′ is described. The construction of this all-carbon stereogenic center involves the use of an intramoleculer photoredox-catalyzed reaction. ... ...

    Abstract The design of novel nucleoside triphosphate (NTP) analogues bearing an all-carbon quaternary center at C2′ or C3′ is described. The construction of this all-carbon stereogenic center involves the use of an intramoleculer photoredox-catalyzed reaction. The nucleoside analogues (NA) hydroxyl functional group at C2′ was generated by diastereoselective epoxidation. In addition, highly enantioselective and diastereoselective Mukaiyama aldol reactions, diastereoselective N -glycosylations and regioselective triphosphorylation reactions were employed to synthesize the novel NTPs. Two of these compounds are inhibitors of the RNA-dependent RNA polymerase (RdRp) of SARS-CoV-2, the causal virus of COVID-19.
    Keywords SARS-CoV-2 ; COVID-19 ; RdRp ; quaternary stereocenter ; nucleoside analogues ; epoxidation ; Organic chemistry ; QD241-441
    Language English
    Publishing date 2022-01-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article ; Online: The gene regulatory basis of bystander activation in CD8

    Watson, Neva B / Patel, Ravi K / Kean, Connor / Veazey, Janelle / Oyesola, Oyebola O / Laniewski, Nathan / Grenier, Jennifer K / Wang, Jocelyn / Tabilas, Cybelle / Yee Mon, Kristel J / McNairn, Adrian J / Peng, Seth A / Wesnak, Samantha P / Nzingha, Kito / Davenport, Miles P / Tait Wojno, Elia D / Scheible, Kristin M / Smith, Norah L / Grimson, Andrew /
    Rudd, Brian D

    Science immunology

    2024  Volume 9, Issue 92, Page(s) eadf8776

    Abstract: ... ...

    Abstract CD8
    MeSH term(s) Humans ; Adult ; Mice ; Animals ; CD8-Positive T-Lymphocytes ; Immunity, Innate ; Cytokines ; T-Lymphocyte Subsets ; Antigens
    Chemical Substances Cytokines ; Antigens
    Language English
    Publishing date 2024-02-23
    Publishing country United States
    Document type Journal Article
    ISSN 2470-9468
    ISSN (online) 2470-9468
    DOI 10.1126/sciimmunol.adf8776
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Viral protein X reduces the incorporation of mutagenic noncanonical rNTPs during lentivirus reverse transcription in macrophages.

    Oo, Adrian / Kim, Dong-Hyun / Schinazi, Raymond F / Kim, Baek

    The Journal of biological chemistry

    2019  Volume 295, Issue 2, Page(s) 657–666

    Abstract: Unlike activated CD4+ T cells, nondividing macrophages have an extremely small dNTP pool, which restricts HIV-1 reverse transcription. However, rNTPs are equally abundant in both of these cell types and reach much higher concentrations than dNTPs. The ... ...

    Abstract Unlike activated CD4+ T cells, nondividing macrophages have an extremely small dNTP pool, which restricts HIV-1 reverse transcription. However, rNTPs are equally abundant in both of these cell types and reach much higher concentrations than dNTPs. The greater difference in concentration between dNTPs and rNTPs in macrophages results in frequent misincorporation of noncanonical rNTPs during HIV-1 reverse transcription. Here, we tested whether the highly abundant SAM domain- and HD domain-containing protein 1 (SAMHD1) deoxynucleoside triphosphorylase in macrophages is responsible for frequent rNTP incorporation during HIV-1 reverse transcription. We also assessed whether Vpx (viral protein X), an accessory protein of HIV-2 and some simian immunodeficiency virus strains that targets SAMHD1 for proteolytic degradation, can counteract the rNTP incorporation. Results from biochemical simulation of HIV-1 reverse transcriptase-mediated DNA synthesis confirmed that rNTP incorporation is reduced under Vpx-mediated dNTP elevation. Using HIV-1 vector, we further demonstrated that dNTP pool elevation by Vpx or deoxynucleosides in human primary monocyte-derived macrophages reduces noncanonical rNTP incorporation during HIV-1 reverse transcription, an outcome similarly observed with the infectious HIV-1 89.6 strain. Furthermore, the simian immunodeficiency virus mac239 strain, encoding Vpx, displayed a much lower level of rNTP incorporation than its ΔVpx mutant in macrophages. Finally, the amount of rNMPs incorporated in HIV-1 proviral DNAs remained unchanged for ∼2 weeks in macrophages. These findings suggest that noncanonical rNTP incorporation is regulated by SAMHD1 in macrophages, whereas rNMPs incorporated in HIV-1 proviral DNA remain unrepaired. This suggests a potential long-term DNA damage impact of SAMHD1-mediated rNTP incorporation in macrophages.
    MeSH term(s) Cells, Cultured ; Deoxyribonucleotides/genetics ; Deoxyribonucleotides/metabolism ; HIV/genetics ; HIV/metabolism ; HIV Infections/metabolism ; HIV Reverse Transcriptase/metabolism ; HIV-1/genetics ; HIV-1/metabolism ; HIV-2/genetics ; HIV-2/metabolism ; Humans ; Jurkat Cells ; Macrophages/metabolism ; Macrophages/virology ; Mutagenesis ; Reverse Transcription ; Ribonucleotides/genetics ; Ribonucleotides/metabolism ; SAM Domain and HD Domain-Containing Protein 1/metabolism ; Viral Regulatory and Accessory Proteins/metabolism
    Chemical Substances Deoxyribonucleotides ; Ribonucleotides ; VPX protein, Human immunodeficiency virus 2 ; Viral Regulatory and Accessory Proteins ; reverse transcriptase, Human immunodeficiency virus 1 (EC 2.7.7.-) ; HIV Reverse Transcriptase (EC 2.7.7.49) ; SAM Domain and HD Domain-Containing Protein 1 (EC 3.1.5.-)
    Language English
    Publishing date 2019-12-05
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 2997-x
    ISSN 1083-351X ; 0021-9258
    ISSN (online) 1083-351X
    ISSN 0021-9258
    DOI 10.1074/jbc.RA119.011466
    Database MEDical Literature Analysis and Retrieval System OnLINE

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