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  1. Article ; Online: Bioavailability of flumequine and diclofenac in mice exposed to a metal-drug chemical cocktail. Evaluation of the protective role of selenium.

    Aranda-Merino, Noemí / Marín-Garrido, Antonio / Román-Hidalgo, Cristina / Ramos-Payán, María / Abril, Nieves / Fernández-Torres, Rut / Bello-López, Miguel Ángel

    British journal of pharmacology

    2023  

    Abstract: Background and purpose: Organisms, including humans, are subjected to the simultaneous action of a wide variety of pollutants, the effects of which should not be considered in isolation, as many synergies and antagonisms have been found between many of ... ...

    Abstract Background and purpose: Organisms, including humans, are subjected to the simultaneous action of a wide variety of pollutants, the effects of which should not be considered in isolation, as many synergies and antagonisms have been found between many of them. Therefore, this work proposes an in vivo study to evaluate the effect of certain metal contaminants on the bioavailability and metabolism of pharmacologically active compounds. Because the most frequent entry vector is through ingestion, the influence of the gut microbiota and the possible protective effects of selenium has been additionally evaluated.
    Experimental approach: A controlled exposure experiment in mammals (Mus musculus) to a "chemical cocktail" consisting of metals and pharmaceuticals (diclofenac and flumequine). The presence of selenium has also been evaluated as an antagonist. Mouse plasma samples were measured by UPLC-QTOF. A targeted search of 48 metabolites was also performed.
    Key results: Metals significantly affected the FMQ plasma levels when the gut microbiota was depleted. Hydroxy FMQ decreased if metals were present. Selenium minimized this decrease. The 3-hydroxy DCF metabolite was not found in any case. Changes in some metabolic pathways are discussed.
    Conclusions and implications: The presence of metals in the mouse diet as well as the prior treatment of mice with an antibiotic mixture (Abxs), which deplete the gut microbiota, has a decisive effect on the bioavailability and metabolism of the tested pharmaceuticals and dietary selenium minimize some of their effects.
    Language English
    Publishing date 2023-12-27
    Publishing country England
    Document type Journal Article
    ZDB-ID 80081-8
    ISSN 1476-5381 ; 0007-1188
    ISSN (online) 1476-5381
    ISSN 0007-1188
    DOI 10.1111/bph.16312
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Nano- and micro-sized carnauba wax emulsions-based coatings incorporated with ginger essential oil and hydroxypropyl methylcellulose on papaya: Preservation of quality and delay of post-harvest fruit decay.

    Miranda, Marcela / Sun, Xiuxiu / Marín, Anna / Dos Santos, Luana Cristina / Plotto, Anne / Bai, Jinhe / Benedito Garrido Assis, Odílio / David Ferreira, Marcos / Baldwin, Elizabeth

    Food chemistry: X

    2022  Volume 13, Page(s) 100249

    Abstract: Carnauba wax nano and micro-sized emulsions and hydroxypropyl methylcellulose coatings, alone or combined with ginger essential oils (GEO) were applied on papayas and evaluated under several storage conditions. In a first experiment, storage parameters ... ...

    Abstract Carnauba wax nano and micro-sized emulsions and hydroxypropyl methylcellulose coatings, alone or combined with ginger essential oils (GEO) were applied on papayas and evaluated under several storage conditions. In a first experiment, storage parameters were: 6 days at 22 °C, and 9 days at 13 °C followed by 5 days at 22 °C. In a second experiment, storage was: 5 days at 22 °C, and 10 days at 16 °C followed by 3 days at 22 °C. Coating effects were dependent on storage conditions. While fruits were in cold storage, there were few changes; however, at 22 °C, the differences between coatings became more evident. Nanoemulsions maintained papaya quality during storage by retarding firmness loss, color changes, and reducing respiration rates, resulting in delayed ripening. GEO exhibited some positive effect on fungal disease control. Nanoemulsion-based coatings improved shelf life by reducing weight loss, color development, and slowing ripening of papaya fruit.
    Language English
    Publishing date 2022-02-07
    Publishing country Netherlands
    Document type Journal Article
    ISSN 2590-1575
    ISSN (online) 2590-1575
    DOI 10.1016/j.fochx.2022.100249
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Targeted long-read sequencing identifies and characterizes structural variants in cases of inherited platelet disorders.

    Zamora-Cánovas, Ana / de la Morena-Barrio, Belén / Marín-Quilez, Ana / Sierra-Aisa, Cristina / Male, Christoph / Fernández-Mosteirin, Nuria / Trapero-Marugán, María / Padilla, José / Garrido-Rodriguez, Pedro / Sánchez-Fuentes, Ana / Rodríguez-Alen, Agustín / Gómez-González, Pedro Luis / Revilla, Nuria / de la Morena-Barrio, María Eugenia / Bastida, José María / Corral, Javier / Rivera, José / Lozano, María L

    Journal of thrombosis and haemostasis : JTH

    2023  Volume 22, Issue 3, Page(s) 851–859

    Abstract: Background: Genetic diagnosis of inherited platelet disorders (IPDs) is mainly performed by high-throughput sequencing (HTS). These short-read-based sequencing methods sometimes fail to characterize the genetics of the disease.: Objectives: To ... ...

    Abstract Background: Genetic diagnosis of inherited platelet disorders (IPDs) is mainly performed by high-throughput sequencing (HTS). These short-read-based sequencing methods sometimes fail to characterize the genetics of the disease.
    Objectives: To evaluate nanopore long-read DNA sequencing for characterization of structural variants (SVs) in patients with IPDs.
    Methods: Four patients with a clinical and laboratory diagnosis of Glanzmann thrombasthenia (GT) (P1 and P2) and Hermansky-Pudlak syndrome (HPS) (P3 and P4) in whom HTS missed the underlying molecular cause were included. DNA was analyzed by both standard HTS and nanopore sequencing on a MinION device (Oxford Nanopore Technologies) after enrichment of DNA spanning regions covering GT and HPS genes.
    Results: In patients with GT, HTS identified only 1 heterozygous ITGB3 splice variant c.2301+1G>C in P2. In patients with HPS, a homozygous deletion in HPS5 was suspected in P3, and 2 heterozygous HPS3 variants, c.2464C>T (p.Arg822∗) and a deletion affecting 2 exons, were reported in P4. Nanopore sequencing revealed a complex SV affecting exons 2 to 6 in ITGB3 (deletion-inversion-duplication) in homozygosity in P1 and compound heterozygosity with the splice variant in P2. In the 2 patients with HPS, nanopore defined the length of the SVs, which were characterized at nucleotide resolution. This allowed the identification of repetitive Alu elements at the breakpoints and the design of specific polymerase chain reactions for family screening.
    Conclusion: The nanopore technology overcomes the limitations of standard short-read sequencing techniques in SV characterization. Using nanopore, we characterized novel defects in ITGB3, HPS5, and HPS3, highlighting the utility of long-read sequencing as an additional diagnostic tool in IPDs.
    MeSH term(s) Humans ; Homozygote ; Sequence Deletion ; Hermanski-Pudlak Syndrome/genetics ; Sequence Analysis, DNA ; Thrombasthenia/genetics ; High-Throughput Nucleotide Sequencing ; DNA
    Chemical Substances DNA (9007-49-2)
    Language English
    Publishing date 2023-11-24
    Publishing country England
    Document type Journal Article
    ZDB-ID 2112661-6
    ISSN 1538-7836 ; 1538-7933
    ISSN (online) 1538-7836
    ISSN 1538-7933
    DOI 10.1016/j.jtha.2023.11.007
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Salmonella Typhimurium

    Bellido-Carreras, Natividad / Argüello, Héctor / Zaldívar-López, Sara / Jiménez-Marín, Ángeles / Martins, Rodrigo P / Arce, Cristina / Morera, Luis / Carvajal, Ana / Garrido, Juan J

    Veterinary pathology

    2019  Volume 56, Issue 5, Page(s) 681–690

    Abstract: ... ...

    Abstract Salmonella
    MeSH term(s) Animals ; Feces/microbiology ; Gastrointestinal Diseases/microbiology ; Gastrointestinal Diseases/veterinary ; Gastrointestinal Tract/microbiology ; Lymphoid Tissue/microbiology ; Salmonella Infections, Animal/microbiology ; Salmonella typhimurium/isolation & purification ; Swine ; Swine Diseases/microbiology
    Language English
    Publishing date 2019-05-19
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 188012-3
    ISSN 1544-2217 ; 0300-9858
    ISSN (online) 1544-2217
    ISSN 0300-9858
    DOI 10.1177/0300985819843682
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Nano- and micro-sized carnauba wax emulsions-based coatings incorporated with ginger essential oil and hydroxypropyl methylcellulose on papaya: Preservation of quality and delay of post-harvest fruit decay

    Miranda, Marcela / Sun, Xiuxiu / Marín, Anna / dos Santos, Luana Cristina / Plotto, Anne / Bai, Jinhe / Benedito Garrido Assis, Odílio / David Ferreira, Marcos / Baldwin, Elizabeth

    Food chemistry: X. 2022 Mar. 30, v. 13

    2022  

    Abstract: Carnauba wax nano and micro-sized emulsions and hydroxypropyl methylcellulose coatings, alone or combined with ginger essential oils (GEO) were applied on papayas and evaluated under several storage conditions. In a first experiment, storage parameters ... ...

    Abstract Carnauba wax nano and micro-sized emulsions and hydroxypropyl methylcellulose coatings, alone or combined with ginger essential oils (GEO) were applied on papayas and evaluated under several storage conditions. In a first experiment, storage parameters were: 6 days at 22 °C, and 9 days at 13 °C followed by 5 days at 22 °C. In a second experiment, storage was: 5 days at 22 °C, and 10 days at 16 °C followed by 3 days at 22 °C. Coating effects were dependent on storage conditions. While fruits were in cold storage, there were few changes; however, at 22 °C, the differences between coatings became more evident. Nanoemulsions maintained papaya quality during storage by retarding firmness loss, color changes, and reducing respiration rates, resulting in delayed ripening. GEO exhibited some positive effect on fungal disease control. Nanoemulsion-based coatings improved shelf life by reducing weight loss, color development, and slowing ripening of papaya fruit.
    Keywords carnauba wax ; cold storage ; color ; disease control ; essential oils ; firmness ; food chemistry ; fruits ; fungi ; ginger ; methylcellulose ; nanoemulsions ; papayas ; shelf life ; weight loss
    Language English
    Dates of publication 2022-0330
    Publishing place Elsevier Ltd
    Document type Article
    ISSN 2590-1575
    DOI 10.1016/j.fochx.2022.100249
    Database NAL-Catalogue (AGRICOLA)

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  6. Article ; Online: Metabolic and mitochondria alterations induced by SARS-CoV-2 accessory proteins ORF3a, ORF9b, ORF9c and ORF10

    Lopez-Ayllon, Blanca D. / Marin, Silvia / Farinas Fernandez, Marcos / Garcia-Garcia, Transito / Fernandez-Rodriguez, Raul / de Lucas-Rius, Ana / Redondo, Natalia / Mendoza-Garcia, Laura / Foguet, Carles / Grigas, Jouzas / Calvet, Alba / Villalba, Jose Manuel / Rodriguez Gomez, Maria Josefa / Megias, Diego / Mandracchia, Biagio / Luque, Daniel / Lozano, Juan Jose / Calvo, Cristina / Thomson, Timothy M. /
    Garrido, Juan Jose / Cascante, Marta / Montoya, Maria

    bioRxiv

    Abstract: Antiviral signaling, immune response and cell metabolism in human body are dysregulated by SARS-CoV-2, the causative agent of the COVID-19. Here, we show that SARS-CoV-2 accessory proteins ORF3a, ORF9b, ORF9c and ORF10 induce a significant mitochondrial ... ...

    Abstract Antiviral signaling, immune response and cell metabolism in human body are dysregulated by SARS-CoV-2, the causative agent of the COVID-19. Here, we show that SARS-CoV-2 accessory proteins ORF3a, ORF9b, ORF9c and ORF10 induce a significant mitochondrial and metabolic reprogramming in A549 lung epithelial cells. While all four ORFs caused mitochondrial fragmentation and altered mitochondrial function, only ORF3a and ORF9c induced a marked structural alteration in mitochondrial cristae. ORF9b, ORF9c and ORF10 induced largely overlapping transcriptomes. In contrast, ORF3a induced a distinct transcriptome, including the downregulation of numerous genes for proteins with critical mitochondrial functions and morphology. Genome-Scale Metabolic Models predicted common and private metabolic flux reprogramming, notably a depressed amino acid metabolism, and an enhanced metabolism of specific lipids distinctly induced by ORF3a. These findings reveal metabolic dependencies and vulnerabilities prompted by SARS-CoV-2 accessory proteins that may be exploited to identify new targets for intervention.
    Keywords covid19
    Language English
    Publishing date 2023-09-26
    Publisher Cold Spring Harbor Laboratory
    Document type Article ; Online
    DOI 10.1101/2023.09.26.559506
    Database COVID19

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  7. Article ; Online: Salmonella Typhimurium Infection Along the Porcine Gastrointestinal Tract and Associated Lymphoid Tissues

    Bellido-Carreras, Natividad / Argüello, Héctor / Zaldívar-López, Sara / Jiménez-Marín, Ángeles / Martins, Rodrigo P. / Arce, Cristina / Morera, Luis / Carvajal, Ana / Garrido, Juan J.

    Veterinary Pathology. 2019 Sept., v. 56, no. 5 p.681-690

    2019  

    Abstract: Salmonella is a major foodborne pathogen and pork is one of the main sources of human salmonellosis. Understanding the pathogenesis and progression of the infection within the host is of interest to establish potential approaches to control the disease ... ...

    Abstract Salmonella is a major foodborne pathogen and pork is one of the main sources of human salmonellosis. Understanding the pathogenesis and progression of the infection within the host is of interest to establish potential approaches to control the disease in pigs. The present study evaluates factors such as intestinal colonization, fecal shedding, and pathogen persistence by 2 studies using experimental challenge with Salmonella Typhimurium in weaned pigs and euthanasia at different time points (1, 2, and 6 and 2, 14, and 30 days postinfection [dpi], respectively). Histopathology of intestine at early time points (1 dpi and 2 dpi) showed severe damage to the epithelium together with an increase in polymorphonuclear cells and macrophages (P < .001), particularly in jejunum and ileum. Large quantities of Salmonella were detected within the contents of the ileum, cecum, and colon in early infection. Salmonella could also be observed in the medulla of tonsils and mesenteric lymph nodes. From 6 dpi onward, signs of recovery were observed, with progressive restoration of the epithelium, reduction of the inflammatory infiltrate, and elimination of Salmonella from the mucosa. Concentration of Salmonella in feces and ileum content decreased, but shedding did not cease even at 4 weeks after infection. Persistence of the bacteria in mesenteric lymph nodes was identified within the connective tissue at 14 and 30 dpi. Our results demonstrate a recovery of the disease after an initial acute phase but also show persistence within the lumen and surrounding lymphoid tissue. These findings are relevant to developing effective control strategies.
    Keywords Salmonella Typhimurium ; animal pathology ; cecum ; colon ; digestive tract ; euthanasia ; feces ; food pathogens ; histopathology ; humans ; ileum ; jejunum ; lymph ; macrophages ; mucosa ; pathogen survival ; pathogenesis ; pork ; salmonellosis ; swine ; foodborne diseases ; immunohistochemistry ; intestine ; lymph node ; porcine ; experimental infection
    Language English
    Dates of publication 2019-09
    Size p. 681-690.
    Publishing place SAGE Publications
    Document type Article ; Online
    ZDB-ID 188012-3
    ISSN 1544-2217 ; 0300-9858
    ISSN (online) 1544-2217
    ISSN 0300-9858
    DOI 10.1177/0300985819843682
    Database NAL-Catalogue (AGRICOLA)

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  8. Article ; Online: Recommendations for the Diagnosis and Management of Asbestos-Related Pleural and Pulmonary Disease.

    Diego Roza, Carmen / Cruz Carmona, M Jesús / Fernández Álvarez, Ramón / Ferrer Sancho, Jaume / Marín Martínez, Belén / Martínez González, Cristina / Rodríguez Portal, José Antonio / Romero Valero, Fernando / Villena Garrido, Victoria

    Archivos de bronconeumologia

    2017  Volume 53, Issue 8, Page(s) 437–442

    Abstract: Asbestos is the term used for a set of mineral silicates that tend to break up into fibers. Its use has been associated with numerous diseases affecting the lung and pleura in particular, all of which are characterized by their long period of latency. ... ...

    Title translation Recomendaciones sobre el diagnóstico y manejo de la enfermedad pleural y pulmonar por asbesto.
    Abstract Asbestos is the term used for a set of mineral silicates that tend to break up into fibers. Its use has been associated with numerous diseases affecting the lung and pleura in particular, all of which are characterized by their long period of latency. Asbestos, moreover, has been recognized by the WHO as a Group IA carcinogen since 1987 and its use was banned in Spain in 2002. The publication in 2013 of the 3rd edition of the specific asbestos health monitoring protocol, together with the development of new diagnostic techniques, prompted the SEPAR EROM group to sponsor publication of guidelines, which review the clinical, radiological and functional aspects of the different asbestos-related diseases. Recommendations have also been made for the diagnosis and follow-up of exposed patients. These recommendations were drawn up in accordance with the GRADE classification system.
    Language Spanish
    Publishing date 2017-08
    Publishing country Spain
    Document type Journal Article
    ZDB-ID 733126-5
    ISSN 1579-2129 ; 0300-2896
    ISSN (online) 1579-2129
    ISSN 0300-2896
    DOI 10.1016/j.arbres.2016.12.014
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Genetic Ancestry, Race, and Severity of Acutely Decompensated Cirrhosis in Latin America.

    Farias, Alberto Queiroz / Curto Vilalta, Anna / Momoyo Zitelli, Patricia / Pereira, Gustavo / Goncalves, Luciana L / Torre, Aldo / Diaz, Juan Manuel / Gadano, Adrian C / Mattos, Angelo Z / Mendes, Liliana S C / Alvares-da-Silva, Mario R / Bittencourt, Paulo L / Benitez, Carlos / Couto, Claudia Alves / Mendizabal, Manuel / Toledo, Claudio L / Mazo, Daniel F C / Castillo Barradas, Mauricio / Uson Raposo, Eva M /
    Padilla-Machaca, P Martín / Zarela Lozano Miranda, Adelina / Malé-Velázquez, René / Castro Lyra, André / Dávalos-Moscol, Milagros B / Pérez Hernández, José L / Ximenes, Rafael O / Faria Silva, Giovanni / Beltrán-Galvis, Oscar A / González Huezo, María S / Bessone, Fernando / Rocha, Tarciso D S / Fassio, Eduardo / Terra, Carlos / Marín, Juan I / Sierra Casas, Patricia / de la Peña-Ramirez, Carlos / Aguilar Parera, Ferran / Fernandes, Flavia / da Penha Zago-Gomes, Maria / Méndez-Guerrero, Osvely / Marciano, Sebastián / Mattos, Angelo A / Oliveira, Joao C / Guerreiro, Gabriel T S / Codes, Liana / Arrese, Marco / Nardelli, Mateus J / Silva, Marcelo O / Palma-Fernandez, Renato / Alcantara, Camila / Sánchez Garrido, Cristina / Trebicka, Jonel / Gustot, Thierry / Fernández, Javier / Clària, Joan / Jalan, Rajiv / Angeli, Paolo / Arroyo, Vicente / Moreau, Richard / Carrilho, Flair J

    Gastroenterology

    2023  Volume 165, Issue 3, Page(s) 696–716

    Abstract: Background & aims: Genetic ancestry or racial differences in health outcomes exist in diseases associated with systemic inflammation (eg, COVID-19). This study aimed to investigate the association of genetic ancestry and race with acute-on-chronic liver ...

    Abstract Background & aims: Genetic ancestry or racial differences in health outcomes exist in diseases associated with systemic inflammation (eg, COVID-19). This study aimed to investigate the association of genetic ancestry and race with acute-on-chronic liver failure (ACLF), which is characterized by acute systemic inflammation, multi-organ failure, and high risk of short-term death.
    Methods: This prospective cohort study analyzed a comprehensive set of data, including genetic ancestry and race among several others, in 1274 patients with acutely decompensated cirrhosis who were nonelectively admitted to 44 hospitals from 7 Latin American countries.
    Results: Three hundred ninety-five patients (31.0%) had ACLF of any grade at enrollment. Patients with ACLF had a higher median percentage of Native American genetic ancestry and lower median percentage of European ancestry than patients without ACLF (22.6% vs 12.9% and 53.4% vs 59.6%, respectively). The median percentage of African genetic ancestry was low among patients with ACLF and among those without ACLF. In terms of race, a higher percentage of patients with ACLF than patients without ACLF were Native American and a lower percentage of patients with ACLF than patients without ACLF were European American or African American. In multivariable analyses that adjusted for differences in sociodemographic and clinical characteristics, the odds ratio for ACLF at enrollment was 1.08 (95% CI, 1.03-1.13) with Native American genetic ancestry and 2.57 (95% CI, 1.84-3.58) for Native American race vs European American race CONCLUSIONS: In a large cohort of Latin American patients with acutely decompensated cirrhosis, increasing percentages of Native American ancestry and Native American race were factors independently associated with ACLF at enrollment.
    MeSH term(s) Humans ; Latin America/epidemiology ; Liver Cirrhosis/diagnosis ; Liver Cirrhosis/epidemiology ; Liver Cirrhosis/genetics ; Prospective Studies ; COVID-19/complications ; Acute-On-Chronic Liver Failure/diagnosis ; Acute-On-Chronic Liver Failure/epidemiology ; Acute-On-Chronic Liver Failure/genetics ; Inflammation/complications ; Prognosis
    Language English
    Publishing date 2023-05-30
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 80112-4
    ISSN 1528-0012 ; 0016-5085
    ISSN (online) 1528-0012
    ISSN 0016-5085
    DOI 10.1053/j.gastro.2023.05.033
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Biological pathway analysis by ArrayUnlock and Ingenuity Pathway Analysis

    Jiménez-Marín Ángeles / Collado-Romero Melania / Ramirez-Boo María / Arce Cristina / Garrido Juan J

    BMC Proceedings, Vol 3, Iss Suppl 4, p S

    2009  Volume 6

    Abstract: Abstract Background Once a list of differentially expressed genes has been identified from a microarray experiment, a subsequent post-analysis task is required in order to find the main biological processes associated to the experimental system. This ... ...

    Abstract Abstract Background Once a list of differentially expressed genes has been identified from a microarray experiment, a subsequent post-analysis task is required in order to find the main biological processes associated to the experimental system. This paper describes two pathways analysis tools, ArrayUnlock and Ingenuity Pathways Analysis (IPA) to deal with the post-analyses of microarray data, in the context of the EADGENE and SABRE post-analysis workshop. Dataset employed in this study proceeded from an experimental chicken infection performed to study the host reactions after a homologous or heterologous secondary challenge with two species of Eimeria . Results Analysis of the same microarray data source employing both commercial pathway analysis tools in parallel let to identify several biological and/or molecular functions altered in the chicken Eimeria maxima infection model, including several immune system related pathways. Biological functions differentially altered in the homologous and heterologous second infection were identified. Similarly, the effect of the timing in a homologous second infection was characterized by several biological functions. Conclusion Functional analysis with ArrayUnlock and IPA provided information related to functional differences with the three comparisons of the chicken infection leading to similar conclusions. ArrayUnlock let an improvement of the annotations of the chicken genome adding InterPro annotations to the data set file. IPA provides two powerful tools to understand the pathway analysis results: the networks and canonical pathways that showed several pathways related to an adaptative immune response.
    Keywords Medicine ; R ; Science ; Q
    Subject code 570
    Language English
    Publishing date 2009-07-01T00:00:00Z
    Publisher BioMed Central
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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