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  1. Article ; Online: Slow hydrogel matrix degradation enhances salivary gland mimetic phenotype.

    Mereness, Jared A / Piraino, Lindsay / Chen, Chiao Yun / Moyston, Tracey / Song, Yuanhui / Shubin, Andrew / DeLouise, Lisa A / Ovitt, Catherine E / Benoit, Danielle S W

    Acta biomaterialia

    2023  Volume 166, Page(s) 187–200

    Abstract: We recently developed a salivary gland tissue mimetic (SGm), comprised of salivary gland cells encapsulated in matrix metalloproteinase (MMP)-degradable poly(ethylene glycol) hydrogels within arrays of ∼320 µm diameter spherical cavities molded in PDMS. ... ...

    Abstract We recently developed a salivary gland tissue mimetic (SGm), comprised of salivary gland cells encapsulated in matrix metalloproteinase (MMP)-degradable poly(ethylene glycol) hydrogels within arrays of ∼320 µm diameter spherical cavities molded in PDMS. The SGm provides a functional and physiologically relevant platform well-suited to high-throughput drug screening for radioprotective compounds. However, the utility of the SGm would benefit from improved retention of acinar cell phenotype and function. We hypothesized that tuning biochemical cues presented within the PEG hydrogel matrix would improve maintenance of acinar cell phenotype and function by mimicking the natural extracellular matrix microenvironment of the intact gland. Hydrogels formed using slower-degrading MMP-sensitive peptide crosslinkers showed >2-fold increase in sphere number formed at 48 h, increased expression of acinar cell markers, and more robust response to calcium stimulation by the secretory agonist, carbachol, with reduced SGm tissue cluster disruption and outgrowth during prolonged culture. The incorporation of adhesive peptides containing RGD or IKVAV improved calcium flux response to secretory agonists at 14 days of culture. Tuning the hydrogel matrix improved cell aggregation, and promoted acinar cell phenotype, and stability of the SGm over 14 days of culture. Furthermore, combining this matrix with optimized media conditions synergistically prolonged the retention of the acinar cell phenotype in SGm. STATEMENT OF SIGNIFICANCE: Salivary gland (SG) dysfunction occurs due to off-target radiation due to head and neck cancer treatments. Progress in understanding gland dysfunction and developing therapeutic strategies for the SG are hampered by the lack of in vitro models, as salivary gland cells rapidly lose critical secretory function within 24 hours in vitro. Herein, we identify properties of poly(ethylene glycol) hydrogel matrices that enhance the secretory phenotype of SG tissue mimetics within the previously-described SG-microbubble tissue chip environment. Combining slow-degrading hydrogels with media conditions optimized for secretory marker expression further enhanced functional secretory response and secretory marker expression.
    MeSH term(s) Hydrogels/pharmacology ; Hydrogels/chemistry ; Calcium/metabolism ; Salivary Glands ; Phenotype ; Extracellular Matrix/metabolism ; Peptides/pharmacology ; Peptides/chemistry ; Biocompatible Materials/metabolism ; Polyethylene Glycols/pharmacology ; Polyethylene Glycols/chemistry
    Chemical Substances Hydrogels ; Calcium (SY7Q814VUP) ; Peptides ; Biocompatible Materials ; Polyethylene Glycols (3WJQ0SDW1A)
    Language English
    Publishing date 2023-05-05
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 2173841-5
    ISSN 1878-7568 ; 1742-7061
    ISSN (online) 1878-7568
    ISSN 1742-7061
    DOI 10.1016/j.actbio.2023.05.005
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Protocol for a young adult mental health (Uspace) cohort: personalising multidimensional care in young people admitted to hospital.

    Tickell, Ashleigh M / Rohleder, Cathrin / Garland, Alexandra / Song, Yun Ju Christine / Carpenter, Joanne Sarah / Harel, Kate / Parker, Lisa / Hickie, Ian B / Scott, Elizabeth

    BMJ open

    2021  Volume 11, Issue 1, Page(s) e038787

    Abstract: Introduction: Currently, the literature on personalised and measurement-based mental healthcare is inadequate with major gaps in the development and evaluation of 21st century service models. Clinical presentations of mental ill health in young people ... ...

    Abstract Introduction: Currently, the literature on personalised and measurement-based mental healthcare is inadequate with major gaps in the development and evaluation of 21st century service models. Clinical presentations of mental ill health in young people are heterogeneous, and clinical and functional outcomes are often suboptimal. Thus, treatments provided in a person-centred and responsive fashion are critical to meet the unique needs of young people and improve individual outcomes. Personalised care also requires concurrent assessment of factors relating to outcomes and underlying neurobiology. This study builds on a completed feasibility study and will be the first to incorporate clinical, cognitive, circadian, metabolic and hormonal profiling with personalised and measurement-based care in a cohort of young people admitted to hospital.
    Methods and analysis: This prospective, transdiagnostic, observational study will be offered to all young people between the ages of 16 and 30 years admitted to the inpatient unit of the participating centre. In total, 400 participants will be recruited. On admission to hospital, young people will undergo clinical and diagnostic assessment, cognitive testing, self-report questionnaires, metabolic and hormonal data collection, and anthropomorphic measurements. Participants will wear an actigraphy watch for at least 1 week during admission to measure circadian patterns and sleep-wake cycles. A feedback session between clinician and participant will occur after clinical and other laboratory assessments to tailor individual treatment plans, explain the ongoing process of measurement-based care, and provide participant and family education. Associations between cognitive impairments, disturbed sleep-wake behaviours, circadian rhythms, clinical symptoms and functional impairments will be evaluated to improve the understanding of parameters affecting clinical outcomes.
    Ethics and dissemination: This study protocol was approved by the Human Research Ethics Committees of the University of Sydney (HREC USYD 2015/867) and St Vincent's Hospital (HREC SVH 17/045). This study will be published on completion in a peer-reviewed journal.
    MeSH term(s) Actigraphy ; Adolescent ; Adult ; Circadian Rhythm ; Hospitals ; Humans ; Mental Health ; Observational Studies as Topic ; Prospective Studies ; Young Adult
    Language English
    Publishing date 2021-01-11
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2599832-8
    ISSN 2044-6055 ; 2044-6055
    ISSN (online) 2044-6055
    ISSN 2044-6055
    DOI 10.1136/bmjopen-2020-038787
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Protocol for a young adult mental health (Uspace) cohort

    Ian B Hickie / Lisa Parker / Ashleigh M Tickell / Cathrin Rohleder / Alexandra Garland / Yun Ju Christine Song / Joanne Sarah Carpenter / Kate Harel / Elizabeth Scott

    BMJ Open, Vol 11, Iss

    personalising multidimensional care in young people admitted to hospital

    2021  Volume 1

    Abstract: Introduction Currently, the literature on personalised and measurement-based mental healthcare is inadequate with major gaps in the development and evaluation of 21st century service models. Clinical presentations of mental ill health in young people are ...

    Abstract Introduction Currently, the literature on personalised and measurement-based mental healthcare is inadequate with major gaps in the development and evaluation of 21st century service models. Clinical presentations of mental ill health in young people are heterogeneous, and clinical and functional outcomes are often suboptimal. Thus, treatments provided in a person-centred and responsive fashion are critical to meet the unique needs of young people and improve individual outcomes. Personalised care also requires concurrent assessment of factors relating to outcomes and underlying neurobiology. This study builds on a completed feasibility study and will be the first to incorporate clinical, cognitive, circadian, metabolic and hormonal profiling with personalised and measurement-based care in a cohort of young people admitted to hospital.Methods and analysis This prospective, transdiagnostic, observational study will be offered to all young people between the ages of 16 and 30 years admitted to the inpatient unit of the participating centre. In total, 400 participants will be recruited. On admission to hospital, young people will undergo clinical and diagnostic assessment, cognitive testing, self-report questionnaires, metabolic and hormonal data collection, and anthropomorphic measurements. Participants will wear an actigraphy watch for at least 1 week during admission to measure circadian patterns and sleep-wake cycles. A feedback session between clinician and participant will occur after clinical and other laboratory assessments to tailor individual treatment plans, explain the ongoing process of measurement-based care, and provide participant and family education. Associations between cognitive impairments, disturbed sleep-wake behaviours, circadian rhythms, clinical symptoms and functional impairments will be evaluated to improve the understanding of parameters affecting clinical outcomes.Ethics and dissemination This study protocol was approved by the Human Research Ethics Committees of the University of Sydney (HREC USYD 2015/867) and St Vincent’s Hospital (HREC SVH 17/045). This study will be published on completion in a peer-reviewed journal.
    Keywords Medicine ; R
    Subject code 360
    Language English
    Publishing date 2021-01-01T00:00:00Z
    Publisher BMJ Publishing Group
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  4. Book ; Audio / Video ; E-Book ; Online: Craniopharyngiomas - classification and surgical treatment

    Song-tao, Qi / Jun, Pan / Yun-tao, Lu

    (Frontiers in neurosurgery ; volume 4)

    2017  

    Author's details Editor: Songtao Qi; Associate editors: Jun Pan; Yuntao Lu
    Series title Frontiers in neurosurgery ; volume 4
    Collection
    Language English
    Size 1 Online Ressource (iii, 419 Seiten), Illustrationen
    Publisher Bentham Science Publishers Ltd
    Publishing place Sharjah, U. A. E
    Publishing country United Arab Emirates
    Document type Book ; Audio / Video ; E-Book ; Online
    Remark Zugriff für angemeldete ZB MED-Nutzerinnen und -Nutzer
    HBZ-ID HT019585794
    ISBN 978-1-68108-532-6 ; 9781681085333 ; 1-68108-532-1 ; 168108533X
    Database ZB MED Catalogue: Medicine, Health, Nutrition, Environment, Agriculture

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  5. Article ; Online: Erratum for Song et al., Exploring Synergy between Classic Mutagens and Antibiotics To Examine Mechanisms of Synergy and Antibiotic Action.

    Song, Lisa Yun / D'Souza, Sara / Lam, Karen / Kang, Tina Manzhu / Yeh, Pamela / Miller, Jeffrey H

    Antimicrobial agents and chemotherapy

    2016  Volume 60, Issue 4, Page(s) 2600

    Language English
    Publishing date 2016-04
    Publishing country United States
    Document type Published Erratum
    ZDB-ID 217602-6
    ISSN 1098-6596 ; 0066-4804
    ISSN (online) 1098-6596
    ISSN 0066-4804
    DOI 10.1128/AAC.00429-16
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: International Center-Level Variation in Utilization of Completion Lymph Node Dissection and Adjuvant Systemic Therapy for Sentinel Lymph Node-Positive Melanoma at Major Referral Centers.

    Broman, Kristy K / Hughes, Tasha M / Bredbeck, Brooke C / Sun, James / Kirichenko, Dennis / Carr, Michael J / Sharma, Avinash / Bartlett, Edmund K / Nijhuis, Amanda A G / Thompson, John F / Hieken, Tina J / Kottschade, Lisa / Downs, Jennifer / Gyorki, David E / Stahlie, Emma / van Akkooi, Alexander / Ollila, David W / O'shea, Kristin / Song, Yun /
    Karakousis, Giorgos / Moncrieff, Marc / Nobes, Jenny / Vetto, John / Han, Dale / Hotz, Meghan / Farma, Jeffrey M / Deneve, Jeremiah L / Fleming, Martin D / Perez, Matthew / Baecher, Kirsten / Lowe, Michael / Bagge, Roger Olofsson / Mattsson, Jan / Lee, Ann Y / Berman, Russell S / Chai, Harvey / Kroon, Hidde M / Teras, Juri / Teras, Roland M / Farrow, Norma E / Beasley, Georgia M / Hui, Jane Yuet Ching / Been, Lukas / Kruijff, Schelto / Sinco, Brandy / Sarnaik, Amod A / Sondak, Vernon K / Zager, Jonathan S / Dossett, Lesly A

    Annals of surgery

    2023  Volume 277, Issue 5, Page(s) e1106–e1115

    Abstract: Objective: The aim of this study was to determine overall trends and center-level variation in utilization of completion lymph node dissection (CLND) and adjuvant systemic therapy for sentinel lymph node (SLN)-positive melanoma.: Summary background ... ...

    Abstract Objective: The aim of this study was to determine overall trends and center-level variation in utilization of completion lymph node dissection (CLND) and adjuvant systemic therapy for sentinel lymph node (SLN)-positive melanoma.
    Summary background data: Based on recent clinical trials, management options for SLN-positive melanoma now include effective adjuvant systemic therapy and nodal observation instead of CLND. It is unknown how these findings have shaped practice or how these contemporaneous developments have influenced their respective utilization.
    Methods: We performed an international cohort study at 21 melanoma referral centers in Australia, Europe, and the United States that treated adults with SLN-positive melanoma and negative distant staging from July 2017 to June 2019. We used generalized linear and multinomial logistic regression models with random intercepts for each center to assess center-level variation in CLND and adjuvant systemic treatment, adjusting for patient and disease-specific characteristics.
    Results: Among 1109 patients, performance of CLND decreased from 28% to 8% and adjuvant systemic therapy use increased from 29 to 60%. For both CLND and adjuvant systemic treatment, the most influential factors were nodal tumor size, stage, and location of treating center. There was notable variation among treating centers in management of stage IIIA patients and use of CLND with adjuvant systemic therapy versus nodal observation alone for similar risk patients.
    Conclusions: There has been an overall decline in CLND and simultaneous adoption of adjuvant systemic therapy for patients with SLN-positive melanoma though wide variation in practice remains. Accounting for differences in patient mix, location of care contributed significantly to the observed variation.
    MeSH term(s) Adult ; Humans ; Sentinel Lymph Node/surgery ; Sentinel Lymph Node/pathology ; Skin Neoplasms/surgery ; Sentinel Lymph Node Biopsy ; Cohort Studies ; Melanoma/surgery ; Melanoma/drug therapy ; Lymph Node Excision ; Retrospective Studies
    Language English
    Publishing date 2023-04-06
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 340-2
    ISSN 1528-1140 ; 0003-4932
    ISSN (online) 1528-1140
    ISSN 0003-4932
    DOI 10.1097/SLA.0000000000005370
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Structural Effects on the Temperature Dependence of Hydride Kinetic Isotope Effects of the NADH/NAD

    Beach, Amanda / Adhikari, Pratichhya / Singh, Grishma / Song, Meimei / DeGroot, Nicholas / Lu, Yun

    The Journal of organic chemistry

    2024  Volume 89, Issue 5, Page(s) 3184–3193

    Abstract: It has recently frequently been found that the kinetic isotope effect (KIE) is independent of temperature ( ...

    Abstract It has recently frequently been found that the kinetic isotope effect (KIE) is independent of temperature (
    Language English
    Publishing date 2024-02-16
    Publishing country United States
    Document type Journal Article
    ZDB-ID 123490-0
    ISSN 1520-6904 ; 0022-3263
    ISSN (online) 1520-6904
    ISSN 0022-3263
    DOI 10.1021/acs.joc.3c02562
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: BRCA2 loss-of-function germline mutations are associated with esophageal squamous cell carcinoma risk in Chinese.

    Ko, Josephine Mun-Yee / Ning, Lvwen / Zhao, Xue-Ke / Chai, Annie Wai Yeeng / Lei, Lisa Chan / Choi, Sheyne Sta Ana / Tao, Lihua / Law, Simon / Kwong, Ava / Lee, Nikki Pui-Yue / Chan, Kin-Tak / Lo, Anthony / Song, Xin / Chen, Pei-Nan / Chang, Yun-Li / Wang, Li Dong / Lung, Maria Li

    International journal of cancer

    2019  Volume 146, Issue 4, Page(s) 1042–1051

    Abstract: Esophageal squamous cell carcinoma (ESCC) occurs with highest frequency in China with over 90% mortality, highlighting the need for early detection and improved treatment strategies. We aimed to identify ESCC cancer predisposition gene(s). Our study ... ...

    Abstract Esophageal squamous cell carcinoma (ESCC) occurs with highest frequency in China with over 90% mortality, highlighting the need for early detection and improved treatment strategies. We aimed to identify ESCC cancer predisposition gene(s). Our study included 4,517 individuals. The discovery phase using whole-exome sequencing (WES) included 186 familial ESCC patients from high-risk China. Targeted gene sequencing validation of 598 genes included 3,289 Henan and 1,228 moderate-risk Hong Kong Chinese. A WES approach identified BRCA2 loss-of-function (LOF) mutations in 3.23% (6/186) familial ESCC patients compared to 0.21% (9/4300) in the ExAC East Asians (odds ratio [OR] = 15.89, p = 2.48 × 10
    MeSH term(s) Adult ; Aged ; Asian Continental Ancestry Group/genetics ; BRCA2 Protein/genetics ; China ; Cohort Studies ; Esophageal Neoplasms/genetics ; Esophageal Squamous Cell Carcinoma/genetics ; Exome ; Female ; Genes, BRCA2 ; Genetic Predisposition to Disease ; Germ-Line Mutation ; Humans ; Loss of Heterozygosity ; Male ; Middle Aged ; Mutation, Missense ; Pedigree ; Penetrance
    Chemical Substances BRCA2 Protein ; BRCA2 protein, human
    Language English
    Publishing date 2019-08-26
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 218257-9
    ISSN 1097-0215 ; 0020-7136
    ISSN (online) 1097-0215
    ISSN 0020-7136
    DOI 10.1002/ijc.32619
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Mutational Consequences of Ciprofloxacin in Escherichia coli.

    Song, Lisa Yun / Goff, Marisa / Davidian, Christina / Mao, Zhiyuan / London, Marisa / Lam, Karen / Yung, Madeline / Miller, Jeffrey H

    Antimicrobial agents and chemotherapy

    2016  Volume 60, Issue 10, Page(s) 6165–6172

    Abstract: We examined the mutagenic specificity of the widely used antibiotic ciprofloxacin (CPR), which displays weak to moderate mutagenic activity in several bacteria and generates short in-frame deletions in rpoB in Staphylococcus aureus To determine the ... ...

    Abstract We examined the mutagenic specificity of the widely used antibiotic ciprofloxacin (CPR), which displays weak to moderate mutagenic activity in several bacteria and generates short in-frame deletions in rpoB in Staphylococcus aureus To determine the spectrum of mutations in a system where any gene knockout would result in a recovered mutant, including frameshifts and both short and long deletions, we examined CPR-induced mutations in the thymidylate synthase-encoding thyA gene. Here, any mutation resulting in loss of thymidylate synthase activity generates trimethoprim (Trm) resistance. We found that deletions and insertions in all three reading frames predominated in the spectrum. They tend to be short deletions and cluster in two regions, one being a GC-rich region with potential extensive secondary structures. We also exploited the well-characterized rpoB-Rif(r) system in Escherichia coli to determine that cells grown in the presence of sublethal doses of CPR not only induced short in-frame deletions in rpoB, but also generated base substitution mutations resulting from induction of the SOS system. Some of the specific point mutations prominent in the spectrum of a strain that overproduces the dinB-encoded Pol IV were also present after growth in CPR. However, these mutations disappeared in CPR-treated dinB mutants, whereas the deletions remained. Moreover, CPR-induced deletions also occurred in a strain lacking all three SOS-induced polymerases. We discuss the implications of these findings for the consequences of overuse of CPR and other antibiotics.
    MeSH term(s) Anti-Bacterial Agents/pharmacology ; Ciprofloxacin/pharmacology ; DNA-Directed RNA Polymerases/genetics ; Escherichia coli/drug effects ; Escherichia coli/genetics ; Escherichia coli Proteins/genetics ; Mutation ; Mutation Rate ; SOS Response (Genetics)/drug effects ; SOS Response (Genetics)/genetics ; Sequence Deletion
    Chemical Substances Anti-Bacterial Agents ; Escherichia coli Proteins ; rpoB protein, E coli ; Ciprofloxacin (5E8K9I0O4U) ; DNA-Directed RNA Polymerases (EC 2.7.7.6)
    Language English
    Publishing date 2016-10
    Publishing country United States
    Document type Journal Article
    ZDB-ID 217602-6
    ISSN 1098-6596 ; 0066-4804
    ISSN (online) 1098-6596
    ISSN 0066-4804
    DOI 10.1128/AAC.01415-16
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Mutagen Synergy: Hypermutability Generated by Specific Pairs of Base Analogs.

    Ang, Jocelyn / Song, Lisa Yun / D'Souza, Sara / Hong, Irene L / Luhar, Rohan / Yung, Madeline / Miller, Jeffrey H

    Journal of bacteriology

    2016  Volume 198, Issue 20, Page(s) 2776–2783

    Abstract: Unlabelled: We tested pairwise combinations of classical base analog mutagens in Escherichia coli to study possible mutagen synergies. We examined the cytidine analogs zebularine (ZEB) and 5-azacytidine (5AZ), the adenine analog 2-aminopurine (2AP), and ...

    Abstract Unlabelled: We tested pairwise combinations of classical base analog mutagens in Escherichia coli to study possible mutagen synergies. We examined the cytidine analogs zebularine (ZEB) and 5-azacytidine (5AZ), the adenine analog 2-aminopurine (2AP), and the uridine/thymidine analog 5-bromodeoxyuridine (5BrdU). We detected a striking synergy with the 2AP plus ZEB combination, resulting in hypermutability, a 35-fold increase in mutation frequency (to 53,000 × 10(-8)) in the rpoB gene over that with either mutagen alone. A weak synergy was also detected with 2AP plus 5AZ and with 5BrdU plus ZEB. The pairing of 2AP and 5BrdU resulted in suppression, lowering the mutation frequency of 5BrdU alone by 6.5-fold. Sequencing the mutations from the 2AP plus ZEB combination showed the predominance of two new hot spots for A·T→G·C transitions that are not well represented in either single mutagen spectrum, and one of which is not found even in the spectrum of a mismatch repair-deficient strain. The strong synergy between 2AP and ZEB could be explained by changes in the dinucleoside triphosphate (dNTP) pools.
    Importance: Although mutagens have been widely studied, the mutagenic effects of combinations of mutagens have not been fully researched. Here, we show that certain pairwise combinations of base analog mutagens display synergy or suppression. In particular, the combination of 2-aminopurine and zebularine, analogs of adenine and cytidine, respectively, shows a 35-fold increased mutation frequency compared with that of either mutagen alone. Understanding the mechanism of synergy can lead to increased understanding of mutagenic processes. As combinations of base analogs are used in certain chemotherapy regimens, including those involving ZEB and 5AZ, these results indicate that testing the mutagenicity of all drug combinations is prudent.
    MeSH term(s) Azacitidine/chemistry ; Azacitidine/toxicity ; Base Pairing/drug effects ; Bromodeoxyuridine/chemistry ; Bromodeoxyuridine/toxicity ; Cytidine/analogs & derivatives ; Cytidine/chemistry ; Cytidine/toxicity ; Drug Synergism ; Escherichia coli/drug effects ; Escherichia coli/genetics ; Escherichia coli/metabolism ; Escherichia coli Proteins/genetics ; Escherichia coli Proteins/metabolism ; Mutagens/chemistry ; Mutagens/toxicity ; Mutation/drug effects
    Chemical Substances Escherichia coli Proteins ; Mutagens ; Cytidine (5CSZ8459RP) ; pyrimidin-2-one beta-ribofuranoside (7A9Y5SX0GY) ; Bromodeoxyuridine (G34N38R2N1) ; Azacitidine (M801H13NRU)
    Language English
    Publishing date 2016-10-15
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2968-3
    ISSN 1098-5530 ; 0021-9193
    ISSN (online) 1098-5530
    ISSN 0021-9193
    DOI 10.1128/JB.00391-16
    Database MEDical Literature Analysis and Retrieval System OnLINE

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