LIVIVO - The Search Portal for Life Sciences

zur deutschen Oberfläche wechseln
Advanced search

Search results

Result 1 - 10 of total 18

Search options

  1. Article ; Online: TP53 mutations predict for poor outcomes in patients with newly diagnosed aggressive B-cell lymphomas in the current era.

    Landsburg, Daniel J / Morrissette, Jennifer Jd / Nasta, Sunita D / Barta, Stefan K / Schuster, Stephen J / Svoboda, Jakub / Chong, Elise A / Bagg, Adam

    Blood advances

    2023  Volume 7, Issue 23, Page(s) 7243–7253

    Abstract: Genetic subgroups of diffuse large B-cell lymphoma (DLBCL) have been identified through comprehensive genomic analysis; however, it is unclear whether this can be applied in clinical practice. We assessed whether mutations detected by clinical laboratory ...

    Abstract Genetic subgroups of diffuse large B-cell lymphoma (DLBCL) have been identified through comprehensive genomic analysis; however, it is unclear whether this can be applied in clinical practice. We assessed whether mutations detected by clinical laboratory mutation analysis (CLMA) were predictive of outcomes in patients with newly diagnosed DLBCL/high-grade B-cell lymphoma (HGBL). Patients diagnosed from 2018 to 2022 whose biopsy samples were subjected to CLMA and who received rituximab plus cyclophosphamide, doxorubicin, vincristine, and prednisone or rituximab plus etoposide, prednisolone, vincristine, cyclophosphamide, and doxorubicin were analyzed for overall/complete response rate (ORR/CRR) and estimated progression-free/overall survival (PFS/OS). CLMA was successfully performed in 117 of 122 patient samples (96%), with a median turnaround time of 17 days. Median duration of follow-up was 31.3 months. Of the mutations detected in ≥10% of the samples, only TP53 was associated with both progression and death at 2 years. TP53 mutations were detected in 36% of tumors, and patients with TP53 mutations experienced significantly lower ORR (71% vs 90%; P = .009), CRR (55% vs 77%; P = .01), 2-year PFS (57% vs 77%; P = .006), 2-year OS (70% vs 91%; P = .001), and median OS after relapse (6.1 months vs not yet reached; P = .001) as than those without TP53 mutations. Furthermore, patients with TP53 loss-of-function (LOF) mutations experienced lower rates of 2-year PFS/OS than those with non-LOF mutations and inferior or near-inferior 2-year PFS if harboring high-risk clinicopathologic features. TP53 mutations identified through CLMA can predict for inferior outcomes in patients with newly diagnosed DLBCL/HGBL. Results of CLMA can be used in real time to inform prognosis and/or identify candidates for clinical trials.
    MeSH term(s) Humans ; Rituximab/therapeutic use ; Vincristine/therapeutic use ; Neoplasm Recurrence, Local/drug therapy ; Mutation ; Lymphoma, Large B-Cell, Diffuse/diagnosis ; Lymphoma, Large B-Cell, Diffuse/drug therapy ; Lymphoma, Large B-Cell, Diffuse/genetics ; Cyclophosphamide/therapeutic use ; Doxorubicin/therapeutic use ; Tumor Suppressor Protein p53/genetics
    Chemical Substances Rituximab (4F4X42SYQ6) ; Vincristine (5J49Q6B70F) ; Cyclophosphamide (8N3DW7272P) ; Doxorubicin (80168379AG) ; TP53 protein, human ; Tumor Suppressor Protein p53
    Language English
    Publishing date 2023-10-18
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2915908-8
    ISSN 2473-9537 ; 2473-9529
    ISSN (online) 2473-9537
    ISSN 2473-9529
    DOI 10.1182/bloodadvances.2023011384
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  2. Article ; Online: Next-generation sequencing and personalized genomic medicine in hepatobiliary malignancies.

    Loaiza-Bonilla, Arturo / Furth, Emma E / Morrissette, Jennifer Jd

    Hepatic oncology

    2015  Volume 2, Issue 4, Page(s) 359–370

    Abstract: Liver cancer is a heterogeneous group of tumors characterized by significant molecular and genomic heterogeneity. The advent of powerful genomic technologies has allowed detection of recurrent somatic alterations in liver cancer, including mutations, ... ...

    Abstract Liver cancer is a heterogeneous group of tumors characterized by significant molecular and genomic heterogeneity. The advent of powerful genomic technologies has allowed detection of recurrent somatic alterations in liver cancer, including mutations, copy number alterations as well as changes in transcriptomes and epigenomes, with the potential to translate these data into clinically relevant predictive and prognostic factors. In this review, we discuss recent advances in the application of high-throughput genomic technologies in liver cancer and the integration of such cancer genome profiling data, highlighting specific relevant subgroups and explain how this knowledge can be used in translational clinical research, 'basket trials', molecular tumor boards, targeted therapy and for personalized genomic medicine applications.
    Language English
    Publishing date 2015-11-11
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 2756098-3
    ISSN 2045-0931 ; 2045-0931
    ISSN (online) 2045-0931
    ISSN 2045-0931
    DOI 10.2217/hep.15.20
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  3. Article ; Online: Clinical activity of the

    Makhlin, Igor / Salinas, Ryan D / Zhang, Daniel / Jacob, Fadi / Ming, Gou-Li / Song, Hongjun / Saxena, Deeksha / Dorsey, Jay F / Nasrallah, MacLean P / Morrissette, Jennifer Jd / Binder, Zev A / O'Rourke, Donald M / Desai, Arati S / Brem, Steven / Bagley, Stephen J

    CNS oncology

    2019  Volume 8, Issue 3, Page(s) CNS43

    Abstract: Glioblastoma (GBM) is the most common primary malignant brain tumor in adults and carries a dismal prognosis. ... ...

    Abstract Glioblastoma (GBM) is the most common primary malignant brain tumor in adults and carries a dismal prognosis. The
    MeSH term(s) Acrylamides/therapeutic use ; Adult ; Aniline Compounds/therapeutic use ; Brain Neoplasms/drug therapy ; Brain Neoplasms/enzymology ; Brain Neoplasms/genetics ; Brain Neoplasms/pathology ; ErbB Receptors/antagonists & inhibitors ; ErbB Receptors/genetics ; Female ; Glioblastoma/drug therapy ; Glioblastoma/enzymology ; Glioblastoma/genetics ; Glioblastoma/pathology ; Humans ; Mutation ; Prognosis ; Protein Kinase Inhibitors/therapeutic use
    Chemical Substances Acrylamides ; Aniline Compounds ; Protein Kinase Inhibitors ; osimertinib (3C06JJ0Z2O) ; EGFR protein, human (EC 2.7.10.1) ; ErbB Receptors (EC 2.7.10.1)
    Language English
    Publishing date 2019-11-15
    Publishing country England
    Document type Case Reports ; Journal Article ; Review
    ZDB-ID 2692808-5
    ISSN 2045-0915 ; 2045-0915
    ISSN (online) 2045-0915
    ISSN 2045-0915
    DOI 10.2217/cns-2019-0014
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  4. Article ; Online: Genomic landscape of metastatic breast cancer identifies preferentially dysregulated pathways and targets.

    Paul, Matt R / Pan, Tien-Chi / Pant, Dhruv K / Shih, Natalie Nc / Chen, Yan / Harvey, Kyra L / Solomon, Aaron / Lieberman, David / Morrissette, Jennifer Jd / Soucier-Ernst, Danielle / Goodman, Noah G / Stavropoulos, S William / Maxwell, Kara N / Clark, Candace / Belka, George K / Feldman, Michael / DeMichele, Angela / Chodosh, Lewis A

    The Journal of clinical investigation

    2020  Volume 130, Issue 8, Page(s) 4252–4265

    Abstract: Nearly all breast cancer deaths result from metastatic disease. Despite this, the genomic events that drive metastatic recurrence are poorly understood. We performed whole-exome and shallow whole-genome sequencing to identify genes and pathways ... ...

    Abstract Nearly all breast cancer deaths result from metastatic disease. Despite this, the genomic events that drive metastatic recurrence are poorly understood. We performed whole-exome and shallow whole-genome sequencing to identify genes and pathways preferentially mutated or copy-number altered in metastases compared with the paired primary tumors from which they arose. Seven genes were preferentially mutated in metastases - MYLK, PEAK1, SLC2A4RG, EVC2, XIRP2, PALB2, and ESR1 - 5 of which are not significantly mutated in any type of human primary cancer. Four regions were preferentially copy-number altered: loss of STK11 and CDKN2A/B, as well as gain of PTK6 and the membrane-bound progesterone receptor, PAQR8. PAQR8 gain was mutually exclusive with mutations in the nuclear estrogen and progesterone receptors, suggesting a role in treatment resistance. Several pathways were preferentially mutated or altered in metastases, including mTOR, CDK/RB, cAMP/PKA, WNT, HKMT, and focal adhesion. Immunohistochemical analyses revealed that metastases preferentially inactivate pRB, upregulate the mTORC1 and WNT signaling pathways, and exhibit nuclear localization of activated PKA. Our findings identify multiple therapeutic targets in metastatic recurrence that are not significantly mutated in primary cancers, implicate membrane progesterone signaling and nuclear PKA in metastatic recurrence, and provide genomic bases for the efficacy of mTORC1, CDK4/6, and PARP inhibitors in metastatic breast cancer.
    MeSH term(s) Breast Neoplasms/genetics ; Breast Neoplasms/metabolism ; Breast Neoplasms/pathology ; Female ; Gene Expression Regulation, Neoplastic ; Humans ; Mutation ; Neoplasm Metastasis ; Neoplasm Proteins/biosynthesis ; Neoplasm Proteins/genetics ; Wnt Signaling Pathway
    Chemical Substances Neoplasm Proteins
    Language English
    Publishing date 2020-06-29
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 3067-3
    ISSN 1558-8238 ; 0021-9738
    ISSN (online) 1558-8238
    ISSN 0021-9738
    DOI 10.1172/JCI129941
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  5. Article ; Online: Clinicopathogenomic analysis of mismatch repair proficient colorectal adenocarcinoma uncovers novel prognostic subgroups with differing patterns of genetic evolution.

    Braxton, David R / Zhang, Ray / Morrissette, Jennifer D / Loaiza-Bonilla, Arturo / Furth, Emma E

    International journal of cancer

    2016  Volume 139, Issue 7, Page(s) 1546–1556

    Abstract: Cancer somatic genetic evolution is a direct contributor to heterogeneity at the clonal and molecular level in colorectal adenocarcinoma (COAD). We sought to determine the extent to which genetic evolution may be detected in COAD in routinely obtained ... ...

    Abstract Cancer somatic genetic evolution is a direct contributor to heterogeneity at the clonal and molecular level in colorectal adenocarcinoma (COAD). We sought to determine the extent to which genetic evolution may be detected in COAD in routinely obtained single clinical specimens and establish clinical significance with regard to clinicopathologic and outcome data. One hundred and twenty three cases of routinely collected mismatch repair proficient COAD were sequenced on the Illumina Truseq Amplicon assay. Measures of intratumoral heterogeneity and the preferential timing of mutational events were assessed and compared to clinicopathologic data. Survival subanalysis was performed on 55 patients. Patient age (p = 0.013) and specimen percent tumor (p = 0.033) was associated with clonal diversity, and biopsy (p = 0.044) and metastasis (p = 0.044) returned fewer mutations per case. APC and TP53 mutations preferentially occurred early while alterations in FBXW7, FLT3, SMAD4, GNAS and PTEN preferentially occurred as late events. Temporal heterogeneity was evident in KRAS and PIK3CA mutations. Hierarchical clustering revealed a TP53 mutant subtype and a MAPK-PIK3CA subtype with differing patterns of late mutational events. Survival subanalysis showed a decreased median progression free survival for the MAPK-PIK3CA subtype (8 months vs. 13 months; univariate logrank p = 0.0380, cox model p= 0.018). Neoadjuvant therapy associated mutations were found for ERBB2 (p = 0.0481) and FBXW7 (p = 0.015). Our data indicate novel molecular subtypes of mismatch repair proficient COAD display differing patterns of genetic evolution which correlate with clinical outcomes. Furthermore, we report treatment acquired and/or selected mutations in ERBB2 and FBXW7.
    MeSH term(s) Adenocarcinoma/genetics ; Adenocarcinoma/pathology ; Cell Cycle Proteins/genetics ; Cluster Analysis ; Colorectal Neoplasms/genetics ; Colorectal Neoplasms/pathology ; DNA Mismatch Repair ; Evolution, Molecular ; F-Box Proteins/genetics ; F-Box-WD Repeat-Containing Protein 7 ; Female ; Gene Frequency ; Humans ; Male ; Middle Aged ; Mutation ; Neoplasm Grading ; Neoplasm Staging ; Prognosis ; Receptor, ErbB-2/genetics ; Ubiquitin-Protein Ligases/genetics
    Chemical Substances Cell Cycle Proteins ; F-Box Proteins ; F-Box-WD Repeat-Containing Protein 7 ; FBXW7 protein, human ; Ubiquitin-Protein Ligases (EC 2.3.2.27) ; Receptor, ErbB-2 (EC 2.7.10.1)
    Language English
    Publishing date 2016-10-01
    Publishing country United States
    Document type Journal Article
    ZDB-ID 218257-9
    ISSN 1097-0215 ; 0020-7136
    ISSN (online) 1097-0215
    ISSN 0020-7136
    DOI 10.1002/ijc.30196
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  6. Article ; Online: Molecular and cytogenomic profiling of hepatic adenocarcinoma expressing inhibinA, a mimicker of neuroendocrine tumors: proposal to reclassify as "cholangioblastic variant of intrahepatic cholangiocarcinoma".

    Braxton, David R / Saxe, Debra / Damjanov, Nevena / Stashek, Kristen / Shroff, Stuti / Morrissette, Jennifer D / Tondon, Rashmi / Furth, Emma E

    Human pathology

    2017  Volume 62, Page(s) 232–241

    Abstract: Only a single case report exists in the literature of hepatic adenocarcinoma expressing InhibinA in a young woman, in which the authors proposed it to be a rare variant of intrahepatic cholangiocarcinoma (iCCA). We present novel molecular and histologic ... ...

    Abstract Only a single case report exists in the literature of hepatic adenocarcinoma expressing InhibinA in a young woman, in which the authors proposed it to be a rare variant of intrahepatic cholangiocarcinoma (iCCA). We present novel molecular and histologic findings in our series of three cases occurring in young women and show these tumors may mimic well-differentiated neuroendocrine tumors (NET). Immunohistochemical (IHC) profiling was performed along with a next-generation sequencing (NGS) 47-gene solid tumor panel, and cytogenomic profiling via single-nucleotide polypmorphism microarray. IHC for inhibinA, chromogranin A (ChrA), and synaptophysin (Syn) was surveyed in liver tumors and in fetal liver. Two of the three patients recurred with metastatic disease with two confirmed deaths. Histological patterns present in the tumors included solid, trabecular, organoid, microcystic, and blastemal-like. IHC was positive for cytokeratin 7 in 3/3, cytokeratin 19 in 3/3, inhibinA in 3/3, ChrA in 3/3, Syn in 3/3, Sox9 in 2/3 and HepPar1 in 0/3. NGS was negative for pathogenic mutations. Recurrent cytogenomic abnormalities included gain of 17q, and loss of 6q. InhibinA was strong and diffusely expressed in 0/10 (0%) iCCA, 0/15 (0%) hepatocellular carcinomas (HCC), in the biliary component of 1/4 (25%) combined HCC-iCCA, 0/4 hepatoblastomas, 1/8 (13%) metastatic NET, and in 1/8 fetal liver tissues. We propose a classification of "cholangioblastic variant of intrahepatic cholangiocarcinoma" and molecular pathogenesis for this rare malignancy. Accurate identification on core biopsy is crucial for clinical management as it may mimic neuroendocrine neoplasms.
    MeSH term(s) Adenocarcinoma/chemistry ; Adenocarcinoma/diagnosis ; Adenocarcinoma/genetics ; Adenocarcinoma/secondary ; Adolescent ; Adult ; Bile Duct Neoplasms/chemistry ; Bile Duct Neoplasms/diagnosis ; Bile Duct Neoplasms/genetics ; Bile Duct Neoplasms/pathology ; Biomarkers, Tumor/analysis ; Biomarkers, Tumor/genetics ; Cholangiocarcinoma/chemistry ; Cholangiocarcinoma/diagnosis ; Cholangiocarcinoma/genetics ; Cholangiocarcinoma/pathology ; Cytogenetic Analysis ; Diagnosis, Differential ; Fatal Outcome ; Female ; Gene Expression Profiling ; Genetic Predisposition to Disease ; Humans ; Immunohistochemistry ; Inhibins/analysis ; Liver Neoplasms/chemistry ; Liver Neoplasms/diagnosis ; Liver Neoplasms/genetics ; Liver Neoplasms/pathology ; Molecular Diagnostic Techniques ; Neuroendocrine Tumors/chemistry ; Neuroendocrine Tumors/diagnosis ; Neuroendocrine Tumors/genetics ; Neuroendocrine Tumors/pathology ; Phenotype ; Polymorphism, Single Nucleotide ; Predictive Value of Tests ; Terminology as Topic ; Treatment Outcome
    Chemical Substances Biomarkers, Tumor ; inhibin A ; Inhibins (57285-09-3)
    Language English
    Publishing date 2017-04
    Publishing country United States
    Document type Case Reports ; Journal Article
    ZDB-ID 207657-3
    ISSN 1532-8392 ; 0046-8177
    ISSN (online) 1532-8392
    ISSN 0046-8177
    DOI 10.1016/j.humpath.2017.02.001
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  7. Article ; Online: Co-targeting BET and MEK as salvage therapy for MAPK and checkpoint inhibitor-resistant melanoma.

    Echevarría-Vargas, Ileabett M / Reyes-Uribe, Patricia I / Guterres, Adam N / Yin, Xiangfan / Kossenkov, Andrew V / Liu, Qin / Zhang, Gao / Krepler, Clemens / Cheng, Chaoran / Wei, Zhi / Somasundaram, Rajasekharan / Karakousis, Giorgos / Xu, Wei / Morrissette, Jennifer Jd / Lu, Yiling / Mills, Gordon B / Sullivan, Ryan J / Benchun, Miao / Frederick, Dennie T /
    Boland, Genevieve / Flaherty, Keith T / Weeraratna, Ashani T / Herlyn, Meenhard / Amaravadi, Ravi / Schuchter, Lynn M / Burd, Christin E / Aplin, Andrew E / Xu, Xiaowei / Villanueva, Jessie

    EMBO molecular medicine

    2018  Volume 10, Issue 5

    Abstract: Despite novel therapies for melanoma, drug resistance remains a significant hurdle to achieving optimal responses. NRAS-mutant melanoma is an archetype of therapeutic challenges in the field, which we used to test drug combinations to avert drug ... ...

    Abstract Despite novel therapies for melanoma, drug resistance remains a significant hurdle to achieving optimal responses. NRAS-mutant melanoma is an archetype of therapeutic challenges in the field, which we used to test drug combinations to avert drug resistance. We show that BET proteins are overexpressed in NRAS-mutant melanoma and that high levels of the BET family member BRD4 are associated with poor patient survival. Combining BET and MEK inhibitors synergistically curbed the growth of
    MeSH term(s) Acetanilides/pharmacology ; Animals ; Cell Cycle Proteins ; Cell Line, Tumor ; Drug Resistance, Neoplasm/drug effects ; Gene Expression Profiling/methods ; Heterocyclic Compounds, 3-Ring/pharmacology ; Humans ; MAP Kinase Kinase 1/antagonists & inhibitors ; MAP Kinase Kinase 1/metabolism ; MAP Kinase Signaling System/drug effects ; Melanoma/drug therapy ; Melanoma/genetics ; Melanoma/metabolism ; Mice, Inbred C57BL ; Mice, Inbred NOD ; Mice, Knockout ; Mice, SCID ; Nuclear Proteins/genetics ; Nuclear Proteins/metabolism ; Protein Kinase Inhibitors/pharmacology ; Proteins/antagonists & inhibitors ; Proteins/metabolism ; Proteomics/methods ; Salvage Therapy/methods ; Skin Neoplasms/drug therapy ; Skin Neoplasms/genetics ; Skin Neoplasms/metabolism ; Transcription Factors/genetics ; Transcription Factors/metabolism ; Xenograft Model Antitumor Assays
    Chemical Substances Acetanilides ; BRD4 protein, human ; Cell Cycle Proteins ; Heterocyclic Compounds, 3-Ring ; Nuclear Proteins ; OTX015 ; Protein Kinase Inhibitors ; Proteins ; Transcription Factors ; bromodomain and extra-terminal domain protein, human ; MAP Kinase Kinase 1 (EC 2.7.12.2)
    Language English
    Publishing date 2018-04-12
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2467145-9
    ISSN 1757-4684 ; 1757-4676
    ISSN (online) 1757-4684
    ISSN 1757-4676
    DOI 10.15252/emmm.201708446
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  8. Article ; Online: Co‐targeting BET and MEK as salvage therapy for MAPK and checkpoint inhibitor‐resistant melanoma

    Ileabett M Echevarría‐Vargas / Patricia I Reyes‐Uribe / Adam N Guterres / Xiangfan Yin / Andrew V Kossenkov / Qin Liu / Gao Zhang / Clemens Krepler / Chaoran Cheng / Zhi Wei / Rajasekharan Somasundaram / Giorgos Karakousis / Wei Xu / Jennifer JD Morrissette / Yiling Lu / Gordon B Mills / Ryan J Sullivan / Miao Benchun / Dennie T Frederick /
    Genevieve Boland / Keith T Flaherty / Ashani T Weeraratna / Meenhard Herlyn / Ravi Amaravadi / Lynn M Schuchter / Christin E Burd / Andrew E Aplin / Xiaowei Xu / Jessie Villanueva

    EMBO Molecular Medicine, Vol 10, Iss 5, Pp n/a-n/a (2018)

    2018  

    Abstract: Abstract Despite novel therapies for melanoma, drug resistance remains a significant hurdle to achieving optimal responses. NRAS‐mutant melanoma is an archetype of therapeutic challenges in the field, which we used to test drug combinations to avert drug ...

    Abstract Abstract Despite novel therapies for melanoma, drug resistance remains a significant hurdle to achieving optimal responses. NRAS‐mutant melanoma is an archetype of therapeutic challenges in the field, which we used to test drug combinations to avert drug resistance. We show that BET proteins are overexpressed in NRAS‐mutant melanoma and that high levels of the BET family member BRD4 are associated with poor patient survival. Combining BET and MEK inhibitors synergistically curbed the growth of NRAS‐mutant melanoma and prolonged the survival of mice bearing tumors refractory to MAPK inhibitors and immunotherapy. Transcriptomic and proteomic analysis revealed that combining BET and MEK inhibitors mitigates a MAPK and checkpoint inhibitor resistance transcriptional signature, downregulates the transcription factor TCF19, and induces apoptosis. Our studies demonstrate that co‐targeting MEK and BET can offset therapy resistance, offering a salvage strategy for melanomas with no other therapeutic options, and possibly other treatment‐resistant tumor types.
    Keywords BET ; combination therapy ; drug resistance ; melanoma ; mutant NRAS ; Medicine (General) ; R5-920 ; Genetics ; QH426-470
    Subject code 570
    Language English
    Publishing date 2018-05-01T00:00:00Z
    Publisher Wiley
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

    More links

    Kategorien

  9. Article ; Online: The University of Pennsylvania glioblastoma (UPenn-GBM) cohort: advanced MRI, clinical, genomics, & radiomics.

    Bakas, Spyridon / Sako, Chiharu / Akbari, Hamed / Bilello, Michel / Sotiras, Aristeidis / Shukla, Gaurav / Rudie, Jeffrey D / Santamaría, Natali Flores / Kazerooni, Anahita Fathi / Pati, Sarthak / Rathore, Saima / Mamourian, Elizabeth / Ha, Sung Min / Parker, William / Doshi, Jimit / Baid, Ujjwal / Bergman, Mark / Binder, Zev A / Verma, Ragini /
    Lustig, Robert A / Desai, Arati S / Bagley, Stephen J / Mourelatos, Zissimos / Morrissette, Jennifer / Watt, Christopher D / Brem, Steven / Wolf, Ronald L / Melhem, Elias R / Nasrallah, MacLean P / Mohan, Suyash / O'Rourke, Donald M / Davatzikos, Christos

    Scientific data

    2022  Volume 9, Issue 1, Page(s) 453

    Abstract: Glioblastoma is the most common aggressive adult brain tumor. Numerous studies have reported results from either private institutional data or publicly available datasets. However, current public datasets are limited in terms of: a) number of subjects, b) ...

    Abstract Glioblastoma is the most common aggressive adult brain tumor. Numerous studies have reported results from either private institutional data or publicly available datasets. However, current public datasets are limited in terms of: a) number of subjects, b) lack of consistent acquisition protocol, c) data quality, or d) accompanying clinical, demographic, and molecular information. Toward alleviating these limitations, we contribute the "University of Pennsylvania Glioblastoma Imaging, Genomics, and Radiomics" (UPenn-GBM) dataset, which describes the currently largest publicly available comprehensive collection of 630 patients diagnosed with de novo glioblastoma. The UPenn-GBM dataset includes (a) advanced multi-parametric magnetic resonance imaging scans acquired during routine clinical practice, at the University of Pennsylvania Health System, (b) accompanying clinical, demographic, and molecular information, (d) perfusion and diffusion derivative volumes, (e) computationally-derived and manually-revised expert annotations of tumor sub-regions, as well as (f) quantitative imaging (also known as radiomic) features corresponding to each of these regions. This collection describes our contribution towards repeatable, reproducible, and comparative quantitative studies leading to new predictive, prognostic, and diagnostic assessments.
    MeSH term(s) Adult ; Brain Neoplasms/diagnostic imaging ; Brain Neoplasms/genetics ; Brain Neoplasms/physiopathology ; Genomics ; Glioblastoma/diagnostic imaging ; Glioblastoma/genetics ; Glioblastoma/physiopathology ; Humans ; Magnetic Resonance Imaging ; Prognosis
    Language English
    Publishing date 2022-07-29
    Publishing country England
    Document type Dataset ; Journal Article
    ZDB-ID 2775191-0
    ISSN 2052-4463 ; 2052-4463
    ISSN (online) 2052-4463
    ISSN 2052-4463
    DOI 10.1038/s41597-022-01560-7
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  10. Article: DNMT3A Mutational Status Affects the Results of Dose-Escalated Induction Therapy in Acute Myelogenous Leukemia.

    Sehgal, Alison R / Gimotty, Phyllis A / Zhao, Jianhua / Hsu, Jing-Mei / Daber, Robert / Morrissette, Jennifer D / Luger, Selina / Loren, Alison W / Carroll, Martin

    Clinical cancer research : an official journal of the American Association for Cancer Research

    2015  Volume 21, Issue 7, Page(s) 1614–1620

    Abstract: Purpose: DNA methyltransferase 3A (DNMT3A) is one of the commonly mutated genes in acute myelogenous leukemia (AML). Reports on the prognostic significance of DNMT3A mutations have been inconsistent, and most of the data are available only for patients ... ...

    Abstract Purpose: DNA methyltransferase 3A (DNMT3A) is one of the commonly mutated genes in acute myelogenous leukemia (AML). Reports on the prognostic significance of DNMT3A mutations have been inconsistent, and most of the data are available only for patients 60 years of age or younger. We hypothesized that this inconsistency is due to an interaction between the dose of anthracycline used in induction therapy and DNMT3A status. We studied whether patients with DNMT3A-mutated AML treated with standard dose anthracyclines had an inferior survival compared with patients with other mutation profiles or those who received high-dose therapy.
    Experimental design: A total of 152 patients in this retrospective cohort study (median age, 54 years) with de novo AML underwent induction therapy and next-generation sequencing of 33 commonly mutated genes in hematologic malignancies, including DNMT3A, FLT3-ITD, NPM1, and IDH1/2. Cox regression was used to know whether those with DNMT3A mutations who were treated with standard dose anthracycline had inferior survival.
    Results: DNMT3A mutations, found in 32% of patients, were not associated with an inferior survival. Dose escalation of anthracycline in the induction regimen was associated with improved survival in those with DNMT3A mutations but not those with wild-type DNMT3A. Patients with DNMT3A mutations who received standard dose induction had shorter survival time than other patient groups (10.1 months vs. 19.8 months, P = 0.0129). This relationship remained significant (HR, 1.90; P = 0.006) controlling for multiple variables.
    Conclusions: Patients with DNMT3A-mutated AML have an inferior survival when treated with standard-dose anthracycline induction therapy. This group should be considered for high-dose induction therapy.
    MeSH term(s) Adult ; Aged ; Anthracyclines/administration & dosage ; Antineoplastic Agents/administration & dosage ; Cohort Studies ; DNA (Cytosine-5-)-Methyltransferases/genetics ; DNA Mutational Analysis ; Female ; High-Throughput Nucleotide Sequencing ; Humans ; Induction Chemotherapy/methods ; Kaplan-Meier Estimate ; Leukemia, Myeloid, Acute/drug therapy ; Leukemia, Myeloid, Acute/genetics ; Leukemia, Myeloid, Acute/mortality ; Male ; Middle Aged ; Proportional Hazards Models ; Retrospective Studies ; Young Adult
    Chemical Substances Anthracyclines ; Antineoplastic Agents ; DNA (Cytosine-5-)-Methyltransferases (EC 2.1.1.37) ; DNA methyltransferase 3A (EC 2.1.1.37)
    Language English
    Publishing date 2015-04-01
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 1225457-5
    ISSN 1557-3265 ; 1078-0432
    ISSN (online) 1557-3265
    ISSN 1078-0432
    DOI 10.1158/1078-0432.CCR-14-0327
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

To top