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Article: Low-Powered View, High-Powered Mind: A Case Report of Morpheaform Basal Cell Carcinoma Mistaken for Metastatic Breast Carcinoma.

Imlay, Riley K / Perez Torrico, Cristhian / Sulaimann, Abdullahi / Grimes, Zachary M / Monnett, Shane

2024 Volume 16, Issue 2, Page(s) e54174

Abstract: Basal cell carcinoma (BCC) is one of the most common skin malignancies worldwide. Morpheaform basal cell carcinoma (MBCC) is a rare aggressive subtype of BCC that presents with unique histologic features. Both are treated surgically and have an excellent ...

Abstract	Basal cell carcinoma (BCC) is one of the most common skin malignancies worldwide. Morpheaform basal cell carcinoma (MBCC) is a rare aggressive subtype of BCC that presents with unique histologic features. Both are treated surgically and have an excellent survival rate. Metastatic breast carcinoma, on the other hand, has a poor survival rate along with a more burdensome therapeutic route including chemotherapy. Due to an overlap in common immunohistochemistry stains, there is a possibility of confusing the diagnosis of BCC with metastatic breast carcinoma resulting in potential patient harm. Therefore, a timely and accurate diagnosis distinguishing these malignancies is essential. We report a near-miss event in which a 77-year-old female with MBCC was mistakenly diagnosed with metastatic breast carcinoma. We discuss the details of these stains, characteristic features of MBCC, and treatment options and emphasize the importance of combining laboratory medicine with clinical expertise to improve patient outcomes.
Language	English
Publishing date	2024-02-14
Publishing country	United States
Document type	Case Reports
ZDB-ID	2747273-5
ISSN	2168-8184
ISSN	2168-8184
DOI	10.7759/cureus.54174
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Article ; Online: Transfusion-Associated Circulatory Overload and Transfusion-Related Acute Lung Injury.

van den Akker, Tayler A / Grimes, Zachary M / Friedman, Mark T

American journal of clinical pathology

2022 Volume 156, Issue 4, Page(s) 529–539

Abstract: Objectives: To review the new current diagnostic criteria of transfusion-associated circulatory overload (TACO) and transfusion-related acute lung injury (TRALI) from the literature while highlighting distinguishing features. We provide comprehensive ... ...

Abstract	Objectives: To review the new current diagnostic criteria of transfusion-associated circulatory overload (TACO) and transfusion-related acute lung injury (TRALI) from the literature while highlighting distinguishing features. We provide comprehensive understanding of the importance of hemovigilance and its role in appropriately identifying and reporting these potentially fatal transfusion reactions. Methods: A review of the English language literature was performed to analyze TACO and TRALI while providing further understanding of the rationale behind the historical underrecognition and underreporting. Results: Our review demonstrates the new 2018 and 2019 case definitions for TACO and TRALI, respectively. With more comprehensive diagnostic strategies, adverse transfusion events can be better recognized from mimicking events and underlying disease. In addition, there are mitigation strategies in place to help prevent complications of blood product transfusion, with emphasis on the prevention of TACO and TRALI. Conclusions: TACO and TRALI are potentially fatal adverse complications of blood transfusion. Both have been historically underrecognized and underreported due to poor defining criteria and overlapping symptomatology. Developing a thorough clinical understanding between these two entities can improve hemovigilance reporting and can contribute to risk factor identification and preventative measures.
MeSH term(s)	Blood Safety ; Blood Transfusion ; Humans ; Risk Factors ; Transfusion Reaction/etiology ; Transfusion-Related Acute Lung Injury/blood ; Transfusion-Related Acute Lung Injury/complications ; Transfusion-Related Acute Lung Injury/diagnosis ; Transfusion-Related Acute Lung Injury/pathology
Language	English
Publishing date	2022-09-19
Publishing country	England
Document type	Journal Article ; Review
ZDB-ID	2944-0
ISSN	1943-7722 ; 0002-9173
ISSN (online)	1943-7722
ISSN	0002-9173
DOI	10.1093/ajcp/aqaa279
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Ud II Zs.91: Show issues

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Article ; Online: MAPK-negative feedback regulation confers dependence to JAK2

Kesarwani, Meenu / Kincaid, Zachary / Azhar, Mohammad / Menke, Jacob / Schwieterman, Joshua / Ansari, Sekhu / Reaves, Angela / Deininger, Michael E / Levine, Ross / Grimes, H Leighton / Azam, Mohammad

Leukemia

2023 Volume 37, Issue 8, Page(s) 1686–1697

Abstract: Despite significant advances in developing selective JAK2 inhibitors, JAK2 kinase inhibitor (TKI) therapy is ineffective in suppressing the disease. Reactivation of compensatory MEK-ERK and PI3K survival pathways sustained by inflammatory cytokine ... ...

Abstract	Despite significant advances in developing selective JAK2 inhibitors, JAK2 kinase inhibitor (TKI) therapy is ineffective in suppressing the disease. Reactivation of compensatory MEK-ERK and PI3K survival pathways sustained by inflammatory cytokine signaling causes treatment failure. Concomitant inhibition of MAPK pathway and JAK2 signaling showed improved in vivo efficacy compared to JAK2 inhibition alone but lacked clonal selectivity. We hypothesized that cytokine signaling in JAK2
MeSH term(s)	Humans ; Feedback ; Tumor Suppressor Protein p53/metabolism ; Signal Transduction ; Antineoplastic Agents/therapeutic use ; Cytokines/metabolism ; Janus Kinase 2/metabolism ; Myeloproliferative Disorders/drug therapy ; Mutation
Chemical Substances	Tumor Suppressor Protein p53 ; Antineoplastic Agents ; Cytokines ; Janus Kinase 2 (EC 2.7.10.2) ; JAK2 protein, human (EC 2.7.10.2)
Language	English
Publishing date	2023-07-10
Publishing country	England
Document type	Journal Article ; Research Support, N.I.H., Extramural
ZDB-ID	807030-1
ISSN	1476-5551 ; 0887-6924
ISSN (online)	1476-5551
ISSN	0887-6924
DOI	10.1038/s41375-023-01959-0
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Zs.A 2295: Show issues

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Article ; Online: Stability of nucleic acid bases in concentrated sulfuric acid: Implications for the habitability of Venus' clouds.

Seager, Sara / Petkowski, Janusz J / Seager, Maxwell D / Grimes, John H / Zinsli, Zachary / Vollmer-Snarr, Heidi R / Abd El-Rahman, Mohamed K / Wishart, David S / Lee, Brian L / Gautam, Vasuk / Herrington, Lauren / Bains, William / Darrow, Charles

Proceedings of the National Academy of Sciences of the United States of America

2023 Volume 120, Issue 25, Page(s) e2220007120

Abstract: What constitutes a habitable planet is a frontier to be explored and requires pushing the boundaries of our terracentric viewpoint for what we deem to be a habitable environment. Despite Venus' 700 K surface temperature being too hot for any plausible ... ...

Abstract	What constitutes a habitable planet is a frontier to be explored and requires pushing the boundaries of our terracentric viewpoint for what we deem to be a habitable environment. Despite Venus' 700 K surface temperature being too hot for any plausible solvent and most organic covalent chemistry, Venus' cloud-filled atmosphere layers at 48 to 60 km above the surface hold the main requirements for life: suitable temperatures for covalent bonds; an energy source (sunlight); and a liquid solvent. Yet, the Venus clouds are widely thought to be incapable of supporting life because the droplets are composed of concentrated liquid sulfuric acid-an aggressive solvent that is assumed to rapidly destroy most biochemicals of life on Earth. Recent work, however, demonstrates that a rich organic chemistry can evolve from simple precursor molecules seeded into concentrated sulfuric acid, a result that is corroborated by domain knowledge in industry that such chemistry leads to complex molecules, including aromatics. We aim to expand the set of molecules known to be stable in concentrated sulfuric acid. Here, we show that nucleic acid bases adenine, cytosine, guanine, thymine, and uracil, as well as 2,6-diaminopurine and the "core" nucleic acid bases purine and pyrimidine, are stable in sulfuric acid in the Venus cloud temperature and sulfuric acid concentration range, using UV spectroscopy and combinations of 1D and 2D
MeSH term(s)	Adenine ; Aggression ; Bivalvia ; Sulfuric Acids ; Venus
Chemical Substances	Adenine (JAC85A2161) ; sulfuric acid (O40UQP6WCF) ; Sulfuric Acids
Language	English
Publishing date	2023-06-12
Publishing country	United States
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	209104-5
ISSN	1091-6490 ; 0027-8424
ISSN (online)	1091-6490
ISSN	0027-8424
DOI	10.1073/pnas.2220007120
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Zs.A 1148: Show issues

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Article ; Online: Fatal Pulmonary Thromboembolism in SARS-CoV-2-Infection.

Grimes, Zachary / Bryce, Clare / Sordillo, Emilia Mia / Gordon, Ronald E / Reidy, Jason / Paniz Mondolfi, Alberto E / Fowkes, Mary

Cardiovascular pathology : the official journal of the Society for Cardiovascular Pathology

2020 Volume 48, Page(s) 107227

MeSH term(s)	Alveolar Epithelial Cells/ultrastructure ; Alveolar Epithelial Cells/virology ; Autopsy ; Betacoronavirus ; COVID-19 ; Coronavirus Infections/complications ; Coronavirus Infections/epidemiology ; Fatal Outcome ; Humans ; Male ; Microscopy, Electron, Transmission ; Middle Aged ; New York City/epidemiology ; Pandemics ; Pneumonia, Viral/complications ; Pneumonia, Viral/epidemiology ; Pulmonary Artery/pathology ; Pulmonary Embolism/etiology ; Pulmonary Embolism/pathology ; SARS-CoV-2
Keywords	covid19
Language	English
Publishing date	2020-05-12
Publishing country	United States
Document type	Case Reports
ZDB-ID	1134600-0
ISSN	1879-1336 ; 1054-8807
ISSN (online)	1879-1336
ISSN	1054-8807
DOI	10.1016/j.carpath.2020.107227
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Zs.A 3572: Show issues

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Article ; Online: Utility of bacterial peptidoglycan recycling enzymes in the chemoenzymatic synthesis of valuable UDP sugar substrates.

Ukaegbu, Ophelia I / DeMeester, Kristen E / Liang, Hai / Brown, Ashley R / Jones, Zachary S / Grimes, Catherine Leimkuhler

Methods in enzymology

2020 Volume 638, Page(s) 1–26

Abstract: Uridine diphosphate (UDP) sugars are essential precursors for glycosylation reactions in all forms of life. Reactions that transfer the carbohydrate from the UDP donor are catalyzed by glycosyltransferases (Gtfs). While the stereochemistry and negative ... ...

Abstract	Uridine diphosphate (UDP) sugars are essential precursors for glycosylation reactions in all forms of life. Reactions that transfer the carbohydrate from the UDP donor are catalyzed by glycosyltransferases (Gtfs). While the stereochemistry and negative physiological charge of UDP-sugars are essential for their biochemical function in the cell, these characteristics make them challenging molecules to synthesize and purify on scale in the laboratory. This chapter focuses on the utilization of a chemoenzymatic synthesis of muramyl UDP-sugars, key building blocks in the bacterial cell peptidoglycan. A scalable strategy to obtain UDP-N-acetyl muramic acid derivatives (UDP-NAM), the first committed intermediate used solely in peptidoglycan biosynthesis, is described herein. This methodology utilizes two enzymes involving the cell wall recycling enzymes MurNAc/GlcNAc anomeric kinase (AmgK) and NAM α-1-phosphate uridylyl transferase (MurU), respectively. The promiscuity of these enzymes allows for the unique chemical functionality to be embedded in bacterial peptidoglycan both in vitro and in whole bacterial cells for subsequent structural and functional studies of this important biopolymer.
MeSH term(s)	Bacteria ; Cell Wall ; Peptidoglycan ; Sugars ; Uridine Diphosphate Sugars
Chemical Substances	Peptidoglycan ; Sugars ; Uridine Diphosphate Sugars
Language	English
Publishing date	2020-04-08
Publishing country	United States
Document type	Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
ISSN	1557-7988
ISSN (online)	1557-7988
DOI	10.1016/bs.mie.2020.02.014
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Article ; Online: Central nervous system involvement by severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2).

Paniz-Mondolfi, Alberto / Bryce, Clare / Grimes, Zachary / Gordon, Ronald E / Reidy, Jason / Lednicky, John / Sordillo, Emilia Mia / Fowkes, Mary

Journal of medical virology

2020 Volume 92, Issue 7, Page(s) 699–702

Abstract: Neurologic sequelae can be devastating complications of respiratory viral infections. We report the presence of virus in neural and capillary endothelial cells in frontal lobe tissue obtained at postmortem examination from a patient infected with severe ... ...

Abstract	Neurologic sequelae can be devastating complications of respiratory viral infections. We report the presence of virus in neural and capillary endothelial cells in frontal lobe tissue obtained at postmortem examination from a patient infected with severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2). Our observations of virus in neural tissue, in conjunction with clinical correlates of worsening neurologic symptoms, pave the way to a closer understanding of the pathogenic mechanisms underlying central nervous system involvement by SARS-CoV-2.
MeSH term(s)	Aged ; Ageusia/complications ; Ageusia/diagnosis ; Ageusia/physiopathology ; Ageusia/virology ; Ataxia/complications ; Ataxia/diagnosis ; Ataxia/physiopathology ; Ataxia/virology ; Betacoronavirus/genetics ; Betacoronavirus/pathogenicity ; COVID-19 ; COVID-19 Testing ; Clinical Laboratory Techniques/methods ; Coronavirus Infections/complications ; Coronavirus Infections/diagnosis ; Coronavirus Infections/physiopathology ; Coronavirus Infections/virology ; Endothelial Cells/pathology ; Endothelial Cells/virology ; Fatal Outcome ; Frontal Lobe/blood supply ; Frontal Lobe/pathology ; Frontal Lobe/virology ; Hospitalization ; Humans ; Lung/blood supply ; Lung/pathology ; Lung/virology ; Male ; Neurons/pathology ; Neurons/virology ; Olfaction Disorders/complications ; Olfaction Disorders/diagnosis ; Olfaction Disorders/physiopathology ; Olfaction Disorders/virology ; Pandemics ; Pneumonia, Viral/complications ; Pneumonia, Viral/diagnosis ; Pneumonia, Viral/physiopathology ; Pneumonia, Viral/virology ; RNA, Viral/genetics ; Reverse Transcriptase Polymerase Chain Reaction ; SARS-CoV-2 ; Seizures/complications ; Seizures/diagnosis ; Seizures/physiopathology ; Seizures/virology
Chemical Substances	RNA, Viral
Keywords	covid19
Language	English
Publishing date	2020-04-21
Publishing country	United States
Document type	Case Reports ; Journal Article
ZDB-ID	752392-0
ISSN	1096-9071 ; 0146-6615
ISSN (online)	1096-9071
ISSN	0146-6615
DOI	10.1002/jmv.25915
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Article ; Online: Transient Radiation-Induced Berkelium(III) and Californium(III) Redox Chemistry in Aqueous Solution.

Horne, Gregory P / Rotermund, Brian M / Grimes, Travis S / Sperling, Joseph M / Meeker, David S / Zalupski, Peter R / Beck, Nicholas / Huffman, Zachary K / Martinez, Daniela Gomez / Beshay, Andrew / Peterman, Dean R / Layne, Bobby H / Johnson, Jason / Cook, Andrew R / Albrecht-Schönzart, Thomas E / Mezyk, Stephen P

Inorganic chemistry

2022 Volume 61, Issue 28, Page(s) 10822–10832

Abstract: Despite the significant impact of radiation-induced redox reactions on the accessibility and lifetimes of actinide oxidation states, fundamental knowledge of aqueous actinide metal ion radiation chemistry is limited, especially for the late actinides. A ... ...

Abstract	Despite the significant impact of radiation-induced redox reactions on the accessibility and lifetimes of actinide oxidation states, fundamental knowledge of aqueous actinide metal ion radiation chemistry is limited, especially for the late actinides. A quantitative understanding of these intrinsic radiation-induced processes is essential for investigating the fundamental properties of these actinides. We present here a picosecond electron pulse reaction kinetics study into the radiation-induced redox chemistry of trivalent berkelium (Bk(III)) and californium (Cf(III)) ions in acidic aqueous solutions at ambient temperature. New and first-of-a-kind, second-order rate coefficients are reported for the transient radical-induced reduction of Bk(III) and Cf(III) by the hydrated electron (e
Language	English
Publishing date	2022-07-01
Publishing country	United States
Document type	Journal Article
ZDB-ID	1484438-2
ISSN	1520-510X ; 0020-1669
ISSN (online)	1520-510X
ISSN	0020-1669
DOI	10.1021/acs.inorgchem.2c01106
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Article: Fatal Pulmonary Thromboembolism in SARS-CoV-2-Infection

Grimes, Zachary / Bryce, Clare / Sordillo, Emilia Mia / Gordon, Ronald E / Reidy, Jason / Paniz Mondolfi, Alberto E / Fowkes, Mary

Cardiovasc Pathol

Keywords	covid19
Publisher	WHO
Document type	Article
Note	WHO #Covidence: #275834
Database	COVID19

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Article ; Online: Molecular and immune signatures, and pathological trajectories of fatal COVID-19 lungs defined by in situ spatial single-cell transcriptome analysis.

Das, Arun / Meng, Wen / Liu, Zhentao / Hasib, Md Musaddaqul / Galloway, Hugh / Ramos da Silva, Suzane / Chen, Luping / Sica, Gabriel L / Paniz-Mondolfi, Alberto / Bryce, Clare / Grimes, Zachary / Sordillo, Emilia M / Cordon-Cardo, Carlos / Rivera, Karla Paniagua / Flores, Mario / Chiu, Yu-Chiao / Huang, Yufei / Gao, Shou-Jiang

Journal of medical virology

2023 Volume 95, Issue 8, Page(s) e29009

Abstract: Despite intensive studies during the last 3 years, the pathology and underlying molecular mechanism of coronavirus disease 2019 (COVID-19) remain poorly defined. In this study, we investigated the spatial single-cell molecular and cellular features of ... ...

Abstract	Despite intensive studies during the last 3 years, the pathology and underlying molecular mechanism of coronavirus disease 2019 (COVID-19) remain poorly defined. In this study, we investigated the spatial single-cell molecular and cellular features of postmortem COVID-19 lung tissues using in situ sequencing (ISS). We detected 10 414 863 transcripts of 221 genes in whole-slide tissues and segmented them into 1 719 459 cells that were mapped to 18 major parenchymal and immune cell types, all of which were infected by SARS-CoV-2. Compared with the non-COVID-19 control, COVID-19 lungs exhibited reduced alveolar cells (ACs) and increased innate and adaptive immune cells. We also identified 19 differentially expressed genes in both infected and uninfected cells across the tissues, which reflected the altered cellular compositions. Spatial analysis of local infection rates revealed regions with high infection rates that were correlated with high cell densities (HIHD). The HIHD regions expressed high levels of SARS-CoV-2 entry-related factors including ACE2, FURIN, TMPRSS2 and NRP1, and co-localized with organizing pneumonia (OP) and lymphocytic and immune infiltration, which exhibited increased ACs and fibroblasts but decreased vascular endothelial cells and epithelial cells, mirroring the tissue damage and wound healing processes. Sparse nonnegative matrix factorization (SNMF) analysis of niche features identified seven signatures that captured structure and immune niches in COVID-19 tissues. Trajectory inference based on immune niche signatures defined two pathological routes. Trajectory A primarily progressed with increased NK cells and granulocytes, likely reflecting the complication of microbial infections. Trajectory B was marked by increased HIHD and OP, possibly accounting for the increased immune infiltration. The OP regions were marked by high numbers of fibroblasts expressing extremely high levels of COL1A1 and COL1A2. Examination of single-cell RNA-seq data (scRNA-seq) from COVID-19 lung tissues and idiopathic pulmonary fibrosis (IPF) identified similar cell populations consisting mainly of myofibroblasts. Immunofluorescence staining revealed the activation of IL6-STAT3 and TGF-β-SMAD2/3 pathways in these cells, likely mediating the upregulation of COL1A1 and COL1A2 and excessive fibrosis in the lung tissues. Together, this study provides a spatial single-cell atlas of cellular and molecular signatures of fatal COVID-19 lungs, which reveals the complex spatial cellular heterogeneity, organization, and interactions that characterized the COVID-19 lung pathology.
MeSH term(s)	Humans ; COVID-19/pathology ; SARS-CoV-2/genetics ; Endothelial Cells ; Single-Cell Gene Expression Analysis ; Angiotensin-Converting Enzyme 2/genetics ; Angiotensin-Converting Enzyme 2/metabolism ; Lung/pathology
Chemical Substances	Collagen Type I, alpha2 Subunit ; Angiotensin-Converting Enzyme 2 (EC 3.4.17.23)
Language	English
Publishing date	2023-08-23
Publishing country	United States
Document type	Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
ZDB-ID	752392-0
ISSN	1096-9071 ; 0146-6615
ISSN (online)	1096-9071
ISSN	0146-6615
DOI	10.1002/jmv.29009
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