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  1. Article ; Online: Focus on collagen

    Chen Clarice ZC / Raghunath Michael

    Fibrogenesis & Tissue Repair , Vol 2, Iss 1, p

    in vitro systems to study fibrogenesis and antifibrosis _ state of the art

    2009  Volume 7

    Abstract: Abstract Fibrosis represents a major global disease burden, yet a potent antifibrotic compound is still not in sight. Part of the explanation for this situation is the difficulties that both academic laboratories and research and development departments ... ...

    Abstract Abstract Fibrosis represents a major global disease burden, yet a potent antifibrotic compound is still not in sight. Part of the explanation for this situation is the difficulties that both academic laboratories and research and development departments in the pharmaceutical industry have been facing in re-enacting the fibrotic process in vitro for screening procedures prior to animal testing. Effective in vitro characterization of antifibrotic compounds has been hampered by cell culture settings that are lacking crucial cofactors or are not holistic representations of the biosynthetic and depositional pathway leading to the formation of an insoluble pericellular collagen matrix. In order to appreciate the task which in vitro screening of antifibrotics is up against, we will first review the fibrotic process by categorizing it into events that are upstream of collagen biosynthesis and the actual biosynthetic and depositional cascade of collagen I. We point out oversights such as the omission of vitamin C, a vital cofactor for the production of stable procollagen molecules, as well as the little known in vitro tardy procollagen processing by collagen C-proteinase/BMP-1, another reason for minimal collagen deposition in cell culture. We review current methods of cell culture and collagen quantitation vis-à-vis the high content options and requirements for normalization against cell number for meaningful data retrieval. Only when collagen has formed a fibrillar matrix that becomes cross-linked, invested with ligands, and can be remodelled and resorbed, the complete picture of fibrogenesis can be reflected in vitro . We show here how this can be achieved. A well thought-out in vitro fibrogenesis system represents the missing link between brute force chemical library screens and rational animal experimentation, thus providing both cost-effectiveness and streamlined procedures towards the development of better antifibrotic drugs.
    Keywords Internal medicine ; RC31-1245 ; Medicine ; R ; DOAJ:Internal medicine ; DOAJ:Medicine (General) ; DOAJ:Health Sciences
    Subject code 600
    Language English
    Publishing date 2009-12-01T00:00:00Z
    Publisher BioMed Central
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  2. Article ; Online: Focus on collagen: in vitro systems to study fibrogenesis and antifibrosis state of the art.

    Chen, Clarice Zc / Raghunath, Michael

    Fibrogenesis & tissue repair

    2009  Volume 2, Page(s) 7

    Abstract: Fibrosis represents a major global disease burden, yet a potent antifibrotic compound is still not in sight. Part of the explanation for this situation is the difficulties that both academic laboratories and research and development departments in the ... ...

    Abstract Fibrosis represents a major global disease burden, yet a potent antifibrotic compound is still not in sight. Part of the explanation for this situation is the difficulties that both academic laboratories and research and development departments in the pharmaceutical industry have been facing in re-enacting the fibrotic process in vitro for screening procedures prior to animal testing. Effective in vitro characterization of antifibrotic compounds has been hampered by cell culture settings that are lacking crucial cofactors or are not holistic representations of the biosynthetic and depositional pathway leading to the formation of an insoluble pericellular collagen matrix. In order to appreciate the task which in vitro screening of antifibrotics is up against, we will first review the fibrotic process by categorizing it into events that are upstream of collagen biosynthesis and the actual biosynthetic and depositional cascade of collagen I. We point out oversights such as the omission of vitamin C, a vital cofactor for the production of stable procollagen molecules, as well as the little known in vitro tardy procollagen processing by collagen C-proteinase/BMP-1, another reason for minimal collagen deposition in cell culture. We review current methods of cell culture and collagen quantitation vis-à-vis the high content options and requirements for normalization against cell number for meaningful data retrieval. Only when collagen has formed a fibrillar matrix that becomes cross-linked, invested with ligands, and can be remodelled and resorbed, the complete picture of fibrogenesis can be reflected in vitro. We show here how this can be achieved. A well thought-out in vitro fibrogenesis system represents the missing link between brute force chemical library screens and rational animal experimentation, thus providing both cost-effectiveness and streamlined procedures towards the development of better antifibrotic drugs.
    Language English
    Publishing date 2009-12-15
    Publishing country England
    Document type Journal Article
    ZDB-ID 2460211-5
    ISSN 1755-1536 ; 1755-1536
    ISSN (online) 1755-1536
    ISSN 1755-1536
    DOI 10.1186/1755-1536-2-7
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.

    Phelan, Catherine M / Kuchenbaecker, Karoline B / Tyrer, Jonathan P / Kar, Siddhartha P / Lawrenson, Kate / Winham, Stacey J / Dennis, Joe / Pirie, Ailith / Riggan, Marjorie J / Chornokur, Ganna / Earp, Madalene A / Lyra, Paulo C / Lee, Janet M / Coetzee, Simon / Beesley, Jonathan / McGuffog, Lesley / Soucy, Penny / Dicks, Ed / Lee, Andrew /
    Barrowdale, Daniel / Lecarpentier, Julie / Leslie, Goska / Aalfs, Cora M / Aben, Katja K H / Adams, Marcia / Adlard, Julian / Andrulis, Irene L / Anton-Culver, Hoda / Antonenkova, Natalia / Aravantinos, Gerasimos / Arnold, Norbert / Arun, Banu K / Arver, Brita / Azzollini, Jacopo / Balmaña, Judith / Banerjee, Susana N / Barjhoux, Laure / Barkardottir, Rosa B / Bean, Yukie / Beckmann, Matthias W / Beeghly-Fadiel, Alicia / Benitez, Javier / Bermisheva, Marina / Bernardini, Marcus Q / Birrer, Michael J / Bjorge, Line / Black, Amanda / Blankstein, Kenneth / Blok, Marinus J / Bodelon, Clara / Bogdanova, Natalia / Bojesen, Anders / Bonanni, Bernardo / Borg, Åke / Bradbury, Angela R / Brenton, James D / Brewer, Carole / Brinton, Louise / Broberg, Per / Brooks-Wilson, Angela / Bruinsma, Fiona / Brunet, Joan / Buecher, Bruno / Butzow, Ralf / Buys, Saundra S / Caldes, Trinidad / Caligo, Maria A / Campbell, Ian / Cannioto, Rikki / Carney, Michael E / Cescon, Terence / Chan, Salina B / Chang-Claude, Jenny / Chanock, Stephen / Chen, Xiao Qing / Chiew, Yoke-Eng / Chiquette, Jocelyne / Chung, Wendy K / Claes, Kathleen B M / Conner, Thomas / Cook, Linda S / Cook, Jackie / Cramer, Daniel W / Cunningham, Julie M / D'Aloisio, Aimee A / Daly, Mary B / Damiola, Francesca / Damirovna, Sakaeva Dina / Dansonka-Mieszkowska, Agnieszka / Dao, Fanny / Davidson, Rosemarie / DeFazio, Anna / Delnatte, Capucine / Doheny, Kimberly F / Diez, Orland / Ding, Yuan Chun / Doherty, Jennifer Anne / Domchek, Susan M / Dorfling, Cecilia M / Dörk, Thilo / Dossus, Laure / Duran, Mercedes / Dürst, Matthias / Dworniczak, Bernd / Eccles, Diana / Edwards, Todd / Eeles, Ros / Eilber, Ursula / Ejlertsen, Bent / Ekici, Arif B / Ellis, Steve / Elvira, Mingajeva / Eng, Kevin H / Engel, Christoph / Evans, D Gareth / Fasching, Peter A / Ferguson, Sarah / Ferrer, Sandra Fert / Flanagan, James M / Fogarty, Zachary C / Fortner, Renée T / Fostira, Florentia / Foulkes, William D / Fountzilas, George / Fridley, Brooke L / Friebel, Tara M / Friedman, Eitan / Frost, Debra / Ganz, Patricia A / Garber, Judy / García, María J / Garcia-Barberan, Vanesa / Gehrig, Andrea / Gentry-Maharaj, Aleksandra / Gerdes, Anne-Marie / Giles, Graham G / Glasspool, Rosalind / Glendon, Gord / Godwin, Andrew K / Goldgar, David E / Goranova, Teodora / Gore, Martin / Greene, Mark H / Gronwald, Jacek / Gruber, Stephen / Hahnen, Eric / Haiman, Christopher A / Håkansson, Niclas / Hamann, Ute / Hansen, Thomas V O / Harrington, Patricia A / Harris, Holly R / Hauke, Jan / Hein, Alexander / Henderson, Alex / Hildebrandt, Michelle A T / Hillemanns, Peter / Hodgson, Shirley / Høgdall, Claus K / Høgdall, Estrid / Hogervorst, Frans B L / Holland, Helene / Hooning, Maartje J / Hosking, Karen / Huang, Ruea-Yea / Hulick, Peter J / Hung, Jillian / Hunter, David J / Huntsman, David G / Huzarski, Tomasz / Imyanitov, Evgeny N / Isaacs, Claudine / Iversen, Edwin S / Izatt, Louise / Izquierdo, Angel / Jakubowska, Anna / James, Paul / Janavicius, Ramunas / Jernetz, Mats / Jensen, Allan / Jensen, Uffe Birk / John, Esther M / Johnatty, Sharon / Jones, Michael E / Kannisto, Päivi / Karlan, Beth Y / Karnezis, Anthony / Kast, Karin / Kennedy, Catherine J / Khusnutdinova, Elza / Kiemeney, Lambertus A / Kiiski, Johanna I / Kim, Sung-Won / Kjaer, Susanne K / Köbel, Martin / Kopperud, Reidun K / Kruse, Torben A / Kupryjanczyk, Jolanta / Kwong, Ava / Laitman, Yael / Lambrechts, Diether / Larrañaga, Nerea / Larson, Melissa C / Lazaro, Conxi / Le, Nhu D / Le Marchand, Loic / Lee, Jong Won / Lele, Shashikant B / Leminen, Arto / Leroux, Dominique / Lester, Jenny / Lesueur, Fabienne / Levine, Douglas A / Liang, Dong / Liebrich, Clemens / Lilyquist, Jenna / Lipworth, Loren / Lissowska, Jolanta / Lu, Karen H / Lubinński, Jan / Luccarini, Craig / Lundvall, Lene / Mai, Phuong L / Mendoza-Fandiño, Gustavo / Manoukian, Siranoush / Massuger, Leon F A G / May, Taymaa / Mazoyer, Sylvie / McAlpine, Jessica N / McGuire, Valerie / McLaughlin, John R / McNeish, Iain / Meijers-Heijboer, Hanne / Meindl, Alfons / Menon, Usha / Mensenkamp, Arjen R / Merritt, Melissa A / Milne, Roger L / Mitchell, Gillian / Modugno, Francesmary / Moes-Sosnowska, Joanna / Moffitt, Melissa / Montagna, Marco / Moysich, Kirsten B / Mulligan, Anna Marie / Musinsky, Jacob / Nathanson, Katherine L / Nedergaard, Lotte / Ness, Roberta B / Neuhausen, Susan L / Nevanlinna, Heli / Niederacher, Dieter / Nussbaum, Robert L / Odunsi, Kunle / Olah, Edith / Olopade, Olufunmilayo I / Olsson, Håkan / Olswold, Curtis / O'Malley, David M / Ong, Kai-Ren / Onland-Moret, N Charlotte / Orr, Nicholas / Orsulic, Sandra / Osorio, Ana / Palli, Domenico / Papi, Laura / Park-Simon, Tjoung-Won / Paul, James / Pearce, Celeste L / Pedersen, Inge Søkilde / Peeters, Petra H M / Peissel, Bernard / Peixoto, Ana / Pejovic, Tanja / Pelttari, Liisa M / Permuth, Jennifer B / Peterlongo, Paolo / Pezzani, Lidia / Pfeiler, Georg / Phillips, Kelly-Anne / Piedmonte, Marion / Pike, Malcolm C / Piskorz, Anna M / Poblete, Samantha R / Pocza, Timea / Poole, Elizabeth M / Poppe, Bruce / Porteous, Mary E / Prieur, Fabienne / Prokofyeva, Darya / Pugh, Elizabeth / Pujana, Miquel Angel / Pujol, Pascal / Radice, Paolo / Rantala, Johanna / Rappaport-Fuerhauser, Christine / Rennert, Gad / Rhiem, Kerstin / Rice, Patricia / Richardson, Andrea / Robson, Mark / Rodriguez, Gustavo C / Rodríguez-Antona, Cristina / Romm, Jane / Rookus, Matti A / Rossing, Mary Anne / Rothstein, Joseph H / Rudolph, Anja / Runnebaum, Ingo B / Salvesen, Helga B / Sandler, Dale P / Schoemaker, Minouk J / Senter, Leigha / Setiawan, V Wendy / Severi, Gianluca / Sharma, Priyanka / Shelford, Tameka / Siddiqui, Nadeem / Side, Lucy E / Sieh, Weiva / Singer, Christian F / Sobol, Hagay / Song, Honglin / Southey, Melissa C / Spurdle, Amanda B / Stadler, Zsofia / Steinemann, Doris / Stoppa-Lyonnet, Dominique / Sucheston-Campbell, Lara E / Sukiennicki, Grzegorz / Sutphen, Rebecca / Sutter, Christian / Swerdlow, Anthony J / Szabo, Csilla I / Szafron, Lukasz / Tan, Yen Y / Taylor, Jack A / Tea, Muy-Kheng / Teixeira, Manuel R / Teo, Soo-Hwang / Terry, Kathryn L / Thompson, Pamela J / Thomsen, Liv Cecilie Vestrheim / Thull, Darcy L / Tihomirova, Laima / Tinker, Anna V / Tischkowitz, Marc / Tognazzo, Silvia / Toland, Amanda Ewart / Tone, Alicia / Trabert, Britton / Travis, Ruth C / Trichopoulou, Antonia / Tung, Nadine / Tworoger, Shelley S / van Altena, Anne M / Van Den Berg, David / van der Hout, Annemarie H / van der Luijt, Rob B / Van Heetvelde, Mattias / Van Nieuwenhuysen, Els / van Rensburg, Elizabeth J / Vanderstichele, Adriaan / Varon-Mateeva, Raymonda / Vega, Ana / Edwards, Digna Velez / Vergote, Ignace / Vierkant, Robert A / Vijai, Joseph / Vratimos, Athanassios / Walker, Lisa / Walsh, Christine / Wand, Dorothea / Wang-Gohrke, Shan / Wappenschmidt, Barbara / Webb, Penelope M / Weinberg, Clarice R / Weitzel, Jeffrey N / Wentzensen, Nicolas / Whittemore, Alice S / Wijnen, Juul T / Wilkens, Lynne R / Wolk, Alicja / Woo, Michelle / Wu, Xifeng / Wu, Anna H / Yang, Hannah / Yannoukakos, Drakoulis / Ziogas, Argyrios / Zorn, Kristin K / Narod, Steven A / Easton, Douglas F / Amos, Christopher I / Schildkraut, Joellen M / Ramus, Susan J / Ottini, Laura / Goodman, Marc T / Park, Sue K / Kelemen, Linda E / Risch, Harvey A / Thomassen, Mads / Offit, Kenneth / Simard, Jacques / Schmutzler, Rita Katharina / Hazelett, Dennis / Monteiro, Alvaro N / Couch, Fergus J / Berchuck, Andrew / Chenevix-Trench, Georgia / Goode, Ellen L / Sellers, Thomas A / Gayther, Simon A / Antoniou, Antonis C / Pharoah, Paul D P

    Nature genetics

    2017  Volume 49, Issue 5, Page(s) 680–691

    Abstract: To identify common alleles associated with different histotypes of epithelial ovarian cancer (EOC), we pooled data from multiple genome-wide genotyping projects totaling 25,509 EOC cases and 40,941 controls. We identified nine new susceptibility loci for ...

    Abstract To identify common alleles associated with different histotypes of epithelial ovarian cancer (EOC), we pooled data from multiple genome-wide genotyping projects totaling 25,509 EOC cases and 40,941 controls. We identified nine new susceptibility loci for different EOC histotypes: six for serous EOC histotypes (3q28, 4q32.3, 8q21.11, 10q24.33, 18q11.2 and 22q12.1), two for mucinous EOC (3q22.3 and 9q31.1) and one for endometrioid EOC (5q12.3). We then performed meta-analysis on the results for high-grade serous ovarian cancer with the results from analysis of 31,448 BRCA1 and BRCA2 mutation carriers, including 3,887 mutation carriers with EOC. This identified three additional susceptibility loci at 2q13, 8q24.1 and 12q24.31. Integrated analyses of genes and regulatory biofeatures at each locus predicted candidate susceptibility genes, including OBFC1, a new candidate susceptibility gene for low-grade and borderline serous EOC.
    MeSH term(s) Alleles ; BRCA1 Protein/genetics ; BRCA2 Protein/genetics ; Carcinoma, Ovarian Epithelial ; Female ; Genetic Loci/genetics ; Genetic Predisposition to Disease/genetics ; Genome-Wide Association Study ; Genotype ; Humans ; Meta-Analysis as Topic ; Mutation ; Neoplasms, Glandular and Epithelial/genetics ; Neoplasms, Glandular and Epithelial/pathology ; Ovarian Neoplasms/genetics ; Ovarian Neoplasms/pathology ; Polymorphism, Single Nucleotide ; Risk Factors ; Telomere-Binding Proteins/genetics
    Chemical Substances BRCA1 Protein ; BRCA1 protein, human ; BRCA2 Protein ; BRCA2 protein, human ; Stn1 protein, human ; Telomere-Binding Proteins
    Language English
    Publishing date 2017-03-27
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1108734-1
    ISSN 1546-1718 ; 1061-4036
    ISSN (online) 1546-1718
    ISSN 1061-4036
    DOI 10.1038/ng.3826
    Database MEDical Literature Analysis and Retrieval System OnLINE

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